CSPI06G11160.1 (mRNA) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI06G11160.1
Type	mRNA
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Ubiquitin, putative
Location	Chr6 : 9765670 .. 9768661 (-)
Sequence length	465

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTAAATATTAATAACCAAAGGGAAGGAGAGTAGAGGTAAAGGCAATTAGCCCAAATTTCTCTAACACTTCCAAACAATTCGCCCTTCCTTATCTTTGTTACGAAGAACGTCCGAAGAAACAACTAAACGATGCAGATCTTTGTCAAAACCCTAACTGGGAAGACGATCACGCTCGAAGTTGAGAGCAGTGATACCATCGATAATGTCAAAGCCAAGATCCAGGTCTCTTTTTTCAGATTCCCTCCCATTTCTTACCTTCTCAATCAATTCACTACCTTTCTTTCCCCTTCTTCATGTTTATACCTTTTGATTTATGTTTACTTTCATTTCTTTGAGATCCCTTCGCCCTTCACATGTTATTGCCTTTTTCCGCTTCGATTTCTGCTGTTTTTGTTCGTCCCTGAGGTTTTTGTTTTTTTTTTTTGATCAAATTCTGACTAGCATGCGTTTGCTTTGATTCCGTATCATTGCATGATCCAATGGATGAAGGATTAGGAAATTAGCGTTACTGATTCATTTTCGTTTTGCATATGTGTTAAATTGAATTGTTGGAATGGGTTTTTCTTTTTTAAATTATTTTTAATATGTTTGCGGTCTCTAAGTTTATGCTTGTTCTTTTCGTCTGGTTGTTTGTTAGTTCATCATATTTTCCATGGCTTGATTCTTTTTTATCAGGTGTATGTTTATATTCTTGTCACATCACTTTACGAACAAAATTATTTTTGATGCATGAATTGGTTTCGGAATTTAATTCCAGCGTGCCGTCTTTATAATCGTATTTTGAGTTTTGGAATGTATATTTCTTCTAGCTTTAAACAGGGGGGATTAGACAATTTGGTTTTAATGGTCTGTTTTAATGCAGGACAAGGAAGGTATTCCTCCTGACCAGCAGAGATTAATTTTTGCTGGTAAGCAATTGGAAGATGGTCGAACGCTTGCAGATTATAACATTCAAAAGGAGTCAACCCTTCACTTGGTTTTGAGGCTTAGGGGAGGTACTATGATTAAGGTCAAGACACTGACCGGGAAGGAAATTGAGATTGACATTGAGCCAACTGACACAATTGATCGTATTAAGGAGCGGGTTGAGGAGAAAGAGGGGATTCCCCCTGTACAGCAGAGGTTTGCATTTGCCTCCTTTAATTACTTAAACTACAATAACTATATTTTCAATGGCCTTTTGTATATGTGGATAGCTTGTTTAATCTCCCCTCAAATGTGTCACTGTGCTTTCTCTGTTTAAGAATGGAATTTGGTGTGGAAATTTTTTACTTAGCACAGGATTCATTAGTACATTTTGGTAAGTAAACAATGAAGTTGGGTCAATTTTAGATTCCAACATTTTGGTAAGGTATGAAGTACATTTATAATAAAATATGAAGGAAGATCTAAGATTTACAATACTTAGCTAGGTAATGTCTTATAGTGAAGGTTTATAAAAGAAACCTAAATGCAATGAGTATATTTTCTAGTTGTTTCAAAATAACTAAGAATAGGAATTTGAAACAGAATTTCATGTAAAATAGTATTGTTAGTTTCACATACTTGGAAAATTAACTCCATGGTTCAAGTTCAAGTATCTGAATTTAAAATGTAAATAAATGTTTTCCCATGGTCTAATACAGTAATGCTTGAGTACCTGACAATTGATAGTTTGATAGACTTAGACAGCCACGTTACTTAAGTTGAAGTGTCCATGATTTGTAACTGTAAGTTTTCTCTAGTTGGCTTTCCATGGTCTTTCCTTTAACATCCATTATGTTATTATTTTCTGGAGTGGTGTTAAATATATCTTACTCTCCTTATGGCAATTAGTGAGTCAACAATTCTGAATTTCATCAAAATTCTTTTTTCTAGTCCCTGTGGTCAGCCATCTATGAACTCATATCGGATCAACGGGATCTGTCATTTCTTTTAGTTTTATGAGACTTAAAATTTGATATTGCCGTGTGCTTATTATAACAAGTTCTATCATACTCTGCTTTTTGCAGGCTCATTTATGCAGGTAAACAGCTTGGAGATGACAAAACAGCTAAAGACTACAACATCGAGGGTGGTTCTGTTCTCCATCTAGTGCTAGCCCTGAGGGGTGGTTATCTGTAAAAGCATTTATCTATCACCTCCTGAAATTCAGAAATTTTTAGTTTTTTGTTTTGTTGGTGCTTGATGAATGCATGAGCGGCATCTTTGCTTGTGTGTGGATAAATGGAAAATATTTGAGCCCAAACTTTAACTCTCTTATCAAATTACTCTTGTAATAGAGAGATTTCATGTCCTGTGTATCTCCATCTCTCAAGTTCAAGATTAAACCATTTGGTGTGCGTGGAAGGTGGAGTTTGTAAAATTTAGTCCCAAAGTCATCAATTTTTATTGGGGGGAATGGAAGCTTAATTATCTCTATGTTGTTTTACTTTATTTTCATAGATCCTCTCCTGTTTATGAACAGGGCTTTGTATCTCATTGGCACAAAGTGTTTGGATGTCCTTCACCAGGTGCGTTTCATACTCTTTCTTTCCTCTTATTATAATAGTGTGCCGCATGTGGATTGTTTGCTATTGCTTTTGTTTTCCCCTTTCAATTTTTGAGGAATGTAGGGCTTTGATAATTGTTTGTTTTTTTTAATTCTCAGTTTTCAGCAAAGTTTCAATAATTGTGTAGAAATTTTAAATCGACTATAAGAAGCGTCATTTCGGTTCTGGTTTACTCAAACAAAATCCAAAAAATTAGGTTTCCTATTTTATTTCAGTCCCACAATACACACAGTCCCTCGGCATCTTTGTGTGTTCTCTCTCACATAGTCGCATCCACCTTTGTCTCTAACACCAAGAAGCATAAAGATCACTCCCATTCAGAAGATGGTGTATTTTTTTTTCTTTCAAATTTTAAAAATATTTGTGTCACCCGCTGAAGAAGAGTGTGGCTATTCTCTCTATTCTTGTTATTTTTTTAAAAAATTATTATCAATAGATCACAAATTCAAGATTGGCCCGA

mRNA sequence

ATGCAGATCTTTGTCAAAACCCTAACTGGGAAGACGATCACGCTCGAAGTTGAGAGCAGTGATACCATCGATAATGTCAAAGCCAAGATCCAGGACAAGGAAGGTATTCCTCCTGACCAGCAGAGATTAATTTTTGCTGGTAAGCAATTGGAAGATGGTCGAACGCTTGCAGATTATAACATTCAAAAGGAGTCAACCCTTCACTTGGTTTTGAGGCTTAGGGGAGGTACTATGATTAAGGTCAAGACACTGACCGGGAAGGAAATTGAGATTGACATTGAGCCAACTGACACAATTGATCGTATTAAGGAGCGGGTTGAGGAGAAAGAGGGGATTCCCCCTGTACAGCAGAGGCTCATTTATGCAGGTAAACAGCTTGGAGATGACAAAACAGCTAAAGACTACAACATCGAGGGTGGTTCTGTTCTCCATCTAGTGCTAGCCCTGAGGGGTGGTTATCTGTAA

Coding sequence (CDS)

ATGCAGATCTTTGTCAAAACCCTAACTGGGAAGACGATCACGCTCGAAGTTGAGAGCAGTGATACCATCGATAATGTCAAAGCCAAGATCCAGGACAAGGAAGGTATTCCTCCTGACCAGCAGAGATTAATTTTTGCTGGTAAGCAATTGGAAGATGGTCGAACGCTTGCAGATTATAACATTCAAAAGGAGTCAACCCTTCACTTGGTTTTGAGGCTTAGGGGAGGTACTATGATTAAGGTCAAGACACTGACCGGGAAGGAAATTGAGATTGACATTGAGCCAACTGACACAATTGATCGTATTAAGGAGCGGGTTGAGGAGAAAGAGGGGATTCCCCCTGTACAGCAGAGGCTCATTTATGCAGGTAAACAGCTTGGAGATGACAAAACAGCTAAAGACTACAACATCGAGGGTGGTTCTGTTCTCCATCTAGTGCTAGCCCTGAGGGGTGGTTATCTGTAA

Homology

[Close]

BLAST of CSPI06G11160.1 vs. Swiss-Prot
Match: RUB1_ORYSJ (Ubiquitin-NEDD8-like protein RUB1 OS=Oryza sativa subsp. japonica GN=RUB1 PE=2 SV=2)

HSP 1 Score: 297.4 bits (760), Expect = 9.3e-80
Identity = 152/153 (99.35%), Postives = 152/153 (99.35%), Query Frame = 1


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGY 154
           YAGKQL DDKTAKDYNIEGGSVLHLVLALRGGY
Sbjct: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGGY 153

[Close]

BLAST of CSPI06G11160.1 vs. Swiss-Prot
Match: RUB1_DESAN (Ubiquitin-NEDD8-like protein RUB1 OS=Deschampsia antarctica GN=RUB1 PE=2 SV=2)

HSP 1 Score: 297.0 bits (759), Expect = 1.2e-79
Identity = 151/153 (98.69%), Postives = 152/153 (99.35%), Query Frame = 1


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDR+KERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRVKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGY 154
           YAGKQL DDKTAKDYNIEGGSVLHLVLALRGGY
Sbjct: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGGY 153

[Close]

BLAST of CSPI06G11160.1 vs. Swiss-Prot
Match: RUB1_ARATH (Ubiquitin-NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN=RUB1 PE=1 SV=3)

HSP 1 Score: 295.8 bits (756), Expect = 2.7e-79
Identity = 151/153 (98.69%), Postives = 152/153 (99.35%), Query Frame = 1


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGY 154
           YAGKQL DDKTAKDYNIEGGSVLHLVLALRGG+
Sbjct: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGGF 153

[Close]

BLAST of CSPI06G11160.1 vs. Swiss-Prot
Match: RUB2_ORYSJ (Ubiquitin-NEDD8-like protein RUB2 OS=Oryza sativa subsp. japonica GN=RUB2 PE=2 SV=2)

HSP 1 Score: 294.7 bits (753), Expect = 6.1e-79
Identity = 151/152 (99.34%), Postives = 151/152 (99.34%), Query Frame = 1


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLGDDKTAKDYNIEGGSVLHLVLALRGG 153
           YAGKQL DDKTAKDYNIEGGSVLHLVLALRGG
Sbjct: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 152

[Close]

BLAST of CSPI06G11160.1 vs. Swiss-Prot
Match: RUB2_ARATH (Ubiquitin-NEDD8-like protein RUB2 OS=Arabidopsis thaliana GN=RUB2 PE=1 SV=3)

HSP 1 Score: 292.4 bits (747), Expect = 3.0e-78
Identity = 151/154 (98.05%), Postives = 151/154 (98.05%), Query Frame = 1


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGYL 155
           YAGKQL DDKTAKDY IEGGSVLHLVLALRGG L
Sbjct: 121 YAGKQLADDKTAKDYAIEGGSVLHLVLALRGGLL 154

[Close]

BLAST of CSPI06G11160.1 vs. TrEMBL
Match: K3ZXQ0_SETIT (Uncharacterized protein OS=Setaria italica GN=SETIT_031382mg PE=4 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 1.0e-77
Identity = 152/153 (99.35%), Postives = 152/153 (99.35%), Query Frame = 1


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGY 154
           YAGKQL DDKTAKDYNIEGGSVLHLVLALRGGY
Sbjct: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGGY 153

[Close]

BLAST of CSPI06G11160.1 vs. TrEMBL
Match: C5XCV9_SORBI (Putative uncharacterized protein Sb02g024880 OS=Sorghum bicolor GN=Sb02g024880 PE=4 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 1.0e-77
Identity = 152/153 (99.35%), Postives = 152/153 (99.35%), Query Frame = 1


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGY 154
           YAGKQL DDKTAKDYNIEGGSVLHLVLALRGGY
Sbjct: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGGY 153

[Close]

BLAST of CSPI06G11160.1 vs. TrEMBL
Match: I1QP00_ORYGL (Uncharacterized protein OS=Oryza glaberrima PE=4 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 1.0e-77
Identity = 152/153 (99.35%), Postives = 152/153 (99.35%), Query Frame = 1


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGY 154
           YAGKQL DDKTAKDYNIEGGSVLHLVLALRGGY
Sbjct: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGGY 153

[Close]

BLAST of CSPI06G11160.1 vs. TrEMBL
Match: F2CYA6_HORVD (Predicted protein OS=Hordeum vulgare var. distichum PE=2 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 1.0e-77
Identity = 152/153 (99.35%), Postives = 152/153 (99.35%), Query Frame = 1


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGY 154
           YAGKQL DDKTAKDYNIEGGSVLHLVLALRGGY
Sbjct: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGGY 153

[Close]

BLAST of CSPI06G11160.1 vs. TrEMBL
Match: A2Z1B6_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_31396 PE=4 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 1.0e-77
Identity = 152/153 (99.35%), Postives = 152/153 (99.35%), Query Frame = 1


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGY 154
           YAGKQL DDKTAKDYNIEGGSVLHLVLALRGGY
Sbjct: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGGY 153

[Close]

BLAST of CSPI06G11160.1 vs. TAIR10
Match: AT1G31340.1 (AT1G31340.1 related to ubiquitin 1)

HSP 1 Score: 295.8 bits (756), Expect = 1.5e-80
Identity = 151/153 (98.69%), Postives = 152/153 (99.35%), Query Frame = 1


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGY 154
           YAGKQL DDKTAKDYNIEGGSVLHLVLALRGG+
Sbjct: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGGF 153

[Close]

BLAST of CSPI06G11160.1 vs. TAIR10
Match: AT2G35635.1 (AT2G35635.1 ubiquitin 7)

HSP 1 Score: 292.4 bits (747), Expect = 1.7e-79
Identity = 151/154 (98.05%), Postives = 151/154 (98.05%), Query Frame = 1


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGYL 155
           YAGKQL DDKTAKDY IEGGSVLHLVLALRGG L
Sbjct: 121 YAGKQLADDKTAKDYAIEGGSVLHLVLALRGGLL 154

[Close]

BLAST of CSPI06G11160.1 vs. TAIR10
Match: AT4G05050.1 (AT4G05050.1 ubiquitin 11)

HSP 1 Score: 244.2 bits (622), Expect = 5.3e-65
Identity = 123/153 (80.39%), Postives = 136/153 (88.89%), Query Frame = 1


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGG  I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI
Sbjct: 137 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 196

Query: 121 YAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGY 154
           +AGKQL D +T  DYNI+  S LHLVL LRGG+
Sbjct: 197 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 229

[Close]

BLAST of CSPI06G11160.1 vs. TAIR10
Match: AT4G05320.2 (AT4G05320.2 polyubiquitin 10)

HSP 1 Score: 244.2 bits (622), Expect = 5.3e-65
Identity = 123/153 (80.39%), Postives = 136/153 (88.89%), Query Frame = 1


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGG  I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI
Sbjct: 365 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 424

Query: 121 YAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGY 154
           +AGKQL D +T  DYNI+  S LHLVL LRGG+
Sbjct: 425 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 457

[Close]

BLAST of CSPI06G11160.1 vs. TAIR10
Match: AT4G02890.3 (AT4G02890.3 Ubiquitin family protein)

HSP 1 Score: 244.2 bits (622), Expect = 5.3e-65
Identity = 123/153 (80.39%), Postives = 136/153 (88.89%), Query Frame = 1


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGG  I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI
Sbjct: 213 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 272

Query: 121 YAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGY 154
           +AGKQL D +T  DYNI+  S LHLVL LRGG+
Sbjct: 273 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 305

[Close]

BLAST of CSPI06G11160.1 vs. NCBI nr
Match: gi|449444274|ref|XP_004139900.1| (PREDICTED: ubiquitin-NEDD8-like protein RUB1 [Cucumis sativus])

HSP 1 Score: 300.8 bits (769), Expect = 1.4e-78
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 1


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGYL 155
           YAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGYL
Sbjct: 121 YAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGYL 154

[Close]

BLAST of CSPI06G11160.1 vs. NCBI nr
Match: gi|659112734|ref|XP_008456305.1| (PREDICTED: ubiquitin-NEDD8-like protein RUB1 [Cucumis melo])

HSP 1 Score: 298.9 bits (764), Expect = 5.1e-78
Identity = 153/154 (99.35%), Postives = 154/154 (100.00%), Query Frame = 1


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGYL 155
           YAGKQLGDDKTAKDYNIEGGSVLHLVLALRGG+L
Sbjct: 121 YAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGHL 154

[Close]

BLAST of CSPI06G11160.1 vs. NCBI nr
Match: gi|242044708|ref|XP_002460225.1| (hypothetical protein SORBIDRAFT_02g024880 [Sorghum bicolor])

HSP 1 Score: 297.4 bits (760), Expect = 1.5e-77
Identity = 152/153 (99.35%), Postives = 152/153 (99.35%), Query Frame = 1


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGY 154
           YAGKQL DDKTAKDYNIEGGSVLHLVLALRGGY
Sbjct: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGGY 153

[Close]

BLAST of CSPI06G11160.1 vs. NCBI nr
Match: gi|302393764|sp|P0C073.2|RUB1_DESAN (RecName: Full=Ubiquitin-NEDD8-like protein RUB1; Contains: RecName: Full=Ubiquitin; Contains: RecName: Full=NEDD8-like protein RUB1; AltName: Full=DaRUB1; AltName: Full=Ubiquitin-related protein 1; Flags: Precursor)

HSP 1 Score: 297.0 bits (759), Expect = 2.0e-77
Identity = 151/153 (98.69%), Postives = 152/153 (99.35%), Query Frame = 1


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDR+KERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRVKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGY 154
           YAGKQL DDKTAKDYNIEGGSVLHLVLALRGGY
Sbjct: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGGY 153

[Close]

BLAST of CSPI06G11160.1 vs. NCBI nr
Match: gi|648174117|gb|AIC33058.1| (putative polyubiquitin [Panax ginseng])

HSP 1 Score: 297.0 bits (759), Expect = 2.0e-77
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 1


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLGDDKTAKDYNIEGGSVLHLVLALRGG 153
           YAGKQLGDDKTAKDYNIEGGSVLHLVLALRGG
Sbjct: 121 YAGKQLGDDKTAKDYNIEGGSVLHLVLALRGG 152

The following BLAST results are available for this feature:

BLAST of CSPI06G11160.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RUB1_ORYSJ	9.3e-80	99.35	Ubiquitin-NEDD8-like protein RUB1 OS=Oryza sativa subsp. japonica GN=RUB1 PE=2 S...	[more]
RUB1_DESAN	1.2e-79	98.69	Ubiquitin-NEDD8-like protein RUB1 OS=Deschampsia antarctica GN=RUB1 PE=2 SV=2	[more]
RUB1_ARATH	2.7e-79	98.69	Ubiquitin-NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN=RUB1 PE=1 SV=3	[more]
RUB2_ORYSJ	6.1e-79	99.34	Ubiquitin-NEDD8-like protein RUB2 OS=Oryza sativa subsp. japonica GN=RUB2 PE=2 S...	[more]
RUB2_ARATH	3.0e-78	98.05	Ubiquitin-NEDD8-like protein RUB2 OS=Arabidopsis thaliana GN=RUB2 PE=1 SV=3	[more]

BLAST of CSPI06G11160.1 vs. TrEMBL


Match Name	E-value	Identity	Description
K3ZXQ0_SETIT	1.0e-77	99.35	Uncharacterized protein OS=Setaria italica GN=SETIT_031382mg PE=4 SV=1	[more]
C5XCV9_SORBI	1.0e-77	99.35	Putative uncharacterized protein Sb02g024880 OS=Sorghum bicolor GN=Sb02g024880 P...	[more]
I1QP00_ORYGL	1.0e-77	99.35	Uncharacterized protein OS=Oryza glaberrima PE=4 SV=1	[more]
F2CYA6_HORVD	1.0e-77	99.35	Predicted protein OS=Hordeum vulgare var. distichum PE=2 SV=1	[more]
A2Z1B6_ORYSI	1.0e-77	99.35	Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_31396 PE=4...	[more]

BLAST of CSPI06G11160.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G31340.1	1.5e-80	98.69	related to ubiquitin 1	[more]
AT2G35635.1	1.7e-79	98.05	ubiquitin 7	[more]
AT4G05050.1	5.3e-65	80.39	ubiquitin 11	[more]
AT4G05320.2	5.3e-65	80.39	polyubiquitin 10	[more]
AT4G02890.3	5.3e-65	80.39	Ubiquitin family protein	[more]

BLAST of CSPI06G11160.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449444274\|ref\|XP_004139900.1\|	1.4e-78	100.00	PREDICTED: ubiquitin-NEDD8-like protein RUB1 [Cucumis sativus]	[more]
gi\|659112734\|ref\|XP_008456305.1\|	5.1e-78	99.35	PREDICTED: ubiquitin-NEDD8-like protein RUB1 [Cucumis melo]	[more]
gi\|242044708\|ref\|XP_002460225.1\|	1.5e-77	99.35	hypothetical protein SORBIDRAFT_02g024880 [Sorghum bicolor]	[more]
gi\|302393764\|sp\|P0C073.2\|RUB1_DESAN	2.0e-77	98.69	RecName: Full=Ubiquitin-NEDD8-like protein RUB1; Contains: RecName: Full=Ubiquit...	[more]
gi\|648174117\|gb\|AIC33058.1\|	2.0e-77	100.00	putative polyubiquitin [Panax ginseng]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR000626	Ubiquitin_dom
IPR019954	Ubiquitin_CS
IPR019956	Ubiquitin

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009693	ethylene biosynthetic process
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0005515	protein binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI06G11160	CSPI06G11160	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI06G11160.1	CSPI06G11160.1-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI06G11160.1.utr3p1	CSPI06G11160.1.utr3p1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI06G11160.1.cds3	CSPI06G11160.1.cds3	CDS
CSPI06G11160.1.cds2	CSPI06G11160.1.cds2	CDS
CSPI06G11160.1.cds1	CSPI06G11160.1.cds1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI06G11160.1.utr5p1	CSPI06G11160.1.utr5p1	five_prime_UTR

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000626	Ubiquitin domain	PFAM	PF00240	ubiquitin	coord: 79..150 score: 8.0E-28coord: 3..74 score: 3.5
IPR000626	Ubiquitin domain	SMART	SM00213	ubq_7	coord: 1..72 score: 3.0E-35coord: 77..148 score: 1.2
IPR000626	Ubiquitin domain	PROFILE	PS50053	UBIQUITIN_2	coord: 1..76 score: 30.452coord: 77..152 score: 26
IPR019954	Ubiquitin conserved site	PROSITE	PS00299	UBIQUITIN_1	coord: 103..128 score: -coord: 27..52 scor
IPR019956	Ubiquitin	PRINTS	PR00348	UBIQUITIN	coord: 53..74 score: 6.0E-39coord: 11..31 score: 6.0E-39coord: 32..52 score: 6.0
None	No IPR available	GENE3D	G3DSA:3.10.20.90		coord: 1..79 score: 1.2E-50coord: 80..152 score: 3.4
None	No IPR available	PANTHER	PTHR10666	UBIQUITIN	coord: 1..152 score: 3.0E