CSPI04G12580.1 (mRNA) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI04G12580.1
Type	mRNA
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Ethylene-responsive transcription factor
Location	Chr4 : 10956874 .. 10957509 (-)
Sequence length	636

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAGTTCAGTTGAAAAACAAGAGCATAGAGATGTTGCATTTAAATTAGTTGGGAAATGCATCAAGAAGAGATCTGGTAAACGCAGCTTTGTTGGTGTCAGGCAAAGACCTTCTGGGAAATGGGTAGCAGAGATCAAAGACGCAACTCATGATATCAGAATGTGGTTGGGAACCTTCAACACACCGGAGGAAGCTGCCAGAGCTTACGACGAAGCTGCCTGCCTCCTACGTGGCTCGAATGCTAGAACCAACTTCACTCTCGCTTCCAACTCCTCCTCTGCCCTCTCTTTCAAAATCAGAAACCTTCTCATTCATAAGATCACTTTGAAACGAAGTTCAATCACTGAAACTCATGCTCATGTTGCTCATTCTGAAACAAACCAAGAAATGCACATGTTTGACAATAATGCAGTCTGGAGCAGCTGCAATGGAGAAATTGAGGTGGGTTTTTGTCACTTCACCCATTCATGCTGCGATCTTCCTCTTGGGTTCAATTTTGATATGGATGAGTCTTTGTCTGCACTGAATGGAATCACTCAACATTTAGGAAATGCATATGATGATGCCTTTGAAACACCTGCTGCTCACATTGATTATACCGATTTCTCTTCATTTTTCTTTGTACCAACCTGA

mRNA sequence

ATGGAGAGTTCAGTTGAAAAACAAGAGCATAGAGATGTTGCATTTAAATTAGTTGGGAAATGCATCAAGAAGAGATCTGGTAAACGCAGCTTTGTTGGTGTCAGGCAAAGACCTTCTGGGAAATGGGTAGCAGAGATCAAAGACGCAACTCATGATATCAGAATGTGGTTGGGAACCTTCAACACACCGGAGGAAGCTGCCAGAGCTTACGACGAAGCTGCCTGCCTCCTACGTGGCTCGAATGCTAGAACCAACTTCACTCTCGCTTCCAACTCCTCCTCTGCCCTCTCTTTCAAAATCAGAAACCTTCTCATTCATAAGATCACTTTGAAACGAAGTTCAATCACTGAAACTCATGCTCATGTTGCTCATTCTGAAACAAACCAAGAAATGCACATGTTTGACAATAATGCAGTCTGGAGCAGCTGCAATGGAGAAATTGAGGTGGGTTTTTGTCACTTCACCCATTCATGCTGCGATCTTCCTCTTGGGTTCAATTTTGATATGGATGAGTCTTTGTCTGCACTGAATGGAATCACTCAACATTTAGGAAATGCATATGATGATGCCTTTGAAACACCTGCTGCTCACATTGATTATACCGATTTCTCTTCATTTTTCTTTGTACCAACCTGA

Coding sequence (CDS)

ATGGAGAGTTCAGTTGAAAAACAAGAGCATAGAGATGTTGCATTTAAATTAGTTGGGAAATGCATCAAGAAGAGATCTGGTAAACGCAGCTTTGTTGGTGTCAGGCAAAGACCTTCTGGGAAATGGGTAGCAGAGATCAAAGACGCAACTCATGATATCAGAATGTGGTTGGGAACCTTCAACACACCGGAGGAAGCTGCCAGAGCTTACGACGAAGCTGCCTGCCTCCTACGTGGCTCGAATGCTAGAACCAACTTCACTCTCGCTTCCAACTCCTCCTCTGCCCTCTCTTTCAAAATCAGAAACCTTCTCATTCATAAGATCACTTTGAAACGAAGTTCAATCACTGAAACTCATGCTCATGTTGCTCATTCTGAAACAAACCAAGAAATGCACATGTTTGACAATAATGCAGTCTGGAGCAGCTGCAATGGAGAAATTGAGGTGGGTTTTTGTCACTTCACCCATTCATGCTGCGATCTTCCTCTTGGGTTCAATTTTGATATGGATGAGTCTTTGTCTGCACTGAATGGAATCACTCAACATTTAGGAAATGCATATGATGATGCCTTTGAAACACCTGCTGCTCACATTGATTATACCGATTTCTCTTCATTTTTCTTTGTACCAACCTGA

Homology

[Close]

BLAST of CSPI04G12580.1 vs. Swiss-Prot
Match: RA211_ARATH (Ethylene-responsive transcription factor RAP2-11 OS=Arabidopsis thaliana GN=RAP2-11 PE=2 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 4.3e-27
Identity = 63/90 (70.00%), Postives = 69/90 (76.67%), Query Frame = 1


Query: 23  KKRSGKRSFVGVRQRPSGKWVAEIKDATHDIRMWLGTFNTPEEAARAYDEAACLLRGSNA 82
           K +  K  FVGVRQRPSGKWVAEIKD T  IRMWLGTF T EEAARAYDEAACLLRGSN 
Sbjct: 14  KSKGNKTKFVGVRQRPSGKWVAEIKDTTQKIRMWLGTFETAEEAARAYDEAACLLRGSNT 73

Query: 83  RTNFTLASNSSSALSFKIRNLLIHKITLKR 113
           RTNF     ++S LS KIRNLL  K ++K+
Sbjct: 74  RTNFANHFPNNSQLSLKIRNLLHQKQSMKQ 103

[Close]

BLAST of CSPI04G12580.1 vs. Swiss-Prot
Match: CRF2_ARATH (Ethylene-responsive transcription factor CRF2 OS=Arabidopsis thaliana GN=CRF2 PE=1 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 8.4e-15
Identity = 37/69 (53.62%), Postives = 50/69 (72.46%), Query Frame = 1


Query: 26  SGKRSFVGVRQRPSGKWVAEIKDATHDIRMWLGTFNTPEEAARAYDEAACLLRGSNARTN 85
           +G++ F GVRQRP GKW AEI+D    +R+WLGT+NT EEAA  YD AA  LRG +A TN
Sbjct: 117 TGEKKFRGVRQRPWGKWAAEIRDPLKRVRLWLGTYNTAEEAAMVYDNAAIQLRGPDALTN 176

Query: 86  FTLASNSSS 95
           F++   +++
Sbjct: 177 FSVTPTTAT 185

[Close]

BLAST of CSPI04G12580.1 vs. Swiss-Prot
Match: ERF1_ORYSJ (Ethylene-responsive transcription factor 1 OS=Oryza sativa subsp. japonica GN=EREBP1 PE=1 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.9e-14
Identity = 38/70 (54.29%), Postives = 47/70 (67.14%), Query Frame = 1


Query: 24  KRSGKRSFVGVRQRPSGKWVAEIKDATHDIRMWLGTFNTPEEAARAYDEAACLLRGSNAR 83
           KR  K  F G+RQRP GKW AEI+D    +R+WLGTFN+ EEAARAYD  A  +RG  A+
Sbjct: 113 KRKRKNQFRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNSAEEAARAYDAEARRIRGKKAK 172

Query: 84  TNFTLASNSS 94
            NF  A  ++
Sbjct: 173 VNFPEAPTTA 182

[Close]

BLAST of CSPI04G12580.1 vs. Swiss-Prot
Match: WIN1_ARATH (Ethylene-responsive transcription factor WIN1 OS=Arabidopsis thaliana GN=WIN1 PE=2 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 4.2e-14
Identity = 40/69 (57.97%), Postives = 48/69 (69.57%), Query Frame = 1


Query: 29 RSFVGVRQRPSGKWVAEIKDATHDIRMWLGTFNTPEEAARAYDEAACLLRGSNARTNFTL 88
          + F GVRQR  G WVAEI+      R+WLGTF T EEAARAYDEAA L+ G NA+TNF L
Sbjct: 5  KKFRGVRQRHWGSWVAEIRHPLLKRRIWLGTFETAEEAARAYDEAAVLMSGRNAKTNFPL 64

Query: 89 ASNSSSALS 98
           +N++   S
Sbjct: 65 NNNNTGETS 73

[Close]

BLAST of CSPI04G12580.1 vs. Swiss-Prot
Match: RAP22_ARATH (Ethylene-responsive transcription factor RAP2-2 OS=Arabidopsis thaliana GN=RAP2-2 PE=1 SV=2)

HSP 1 Score: 79.7 bits (195), Expect = 4.2e-14
Identity = 39/70 (55.71%), Postives = 46/70 (65.71%), Query Frame = 1


Query: 24  KRSGKRSFVGVRQRPSGKWVAEIKDATHDIRMWLGTFNTPEEAARAYDEAACLLRGSNAR 83
           KR  K  + G+RQRP GKW AEI+D     R WLGTF+T EEAARAYD AA  +RG+ A+
Sbjct: 121 KRKRKNQYRGIRQRPWGKWAAEIRDPRKGSREWLGTFDTAEEAARAYDAAARRIRGTKAK 180

Query: 84  TNFTLASNSS 94
            NF    N S
Sbjct: 181 VNFPEEKNPS 190

[Close]

BLAST of CSPI04G12580.1 vs. TrEMBL
Match: A0A0A0L1N6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G268100 PE=4 SV=1)

HSP 1 Score: 430.6 bits (1106), Expect = 1.1e-117
Identity = 210/211 (99.53%), Postives = 211/211 (100.00%), Query Frame = 1


Query: 1   MESSVEKQEHRDVAFKLVGKCIKKRSGKRSFVGVRQRPSGKWVAEIKDATHDIRMWLGTF 60
           MESSVEKQEHRDVAFKLVGKCIKKRSGKRSFVGVRQRPSGKWVAEIKDATHDIRMWLGTF
Sbjct: 1   MESSVEKQEHRDVAFKLVGKCIKKRSGKRSFVGVRQRPSGKWVAEIKDATHDIRMWLGTF 60

Query: 61  NTPEEAARAYDEAACLLRGSNARTNFTLASNSSSALSFKIRNLLIHKITLKRSSITETHA 120
           NTPEEAARAYDEAACLLRGSNARTNFTLASNSSSALSFKIRNLLIHKITLKRSSITETHA
Sbjct: 61  NTPEEAARAYDEAACLLRGSNARTNFTLASNSSSALSFKIRNLLIHKITLKRSSITETHA 120

Query: 121 HVAHSETNQEMHMFDNNAVWSSCNGEIEVGFCHFTHSCCDLPLGFNFDMDESLSALNGIT 180
           HVAHSETNQEMHMFDNNAVWSSCNGEIEVGFCHFTHSCCDLPLGFNFDMDESLSALNGIT
Sbjct: 121 HVAHSETNQEMHMFDNNAVWSSCNGEIEVGFCHFTHSCCDLPLGFNFDMDESLSALNGIT 180

Query: 181 QHLGNAYDDAFETPAAHIDYTDFSSFFFVPT 212
           QHLGNAYDDAF+TPAAHIDYTDFSSFFFVPT
Sbjct: 181 QHLGNAYDDAFDTPAAHIDYTDFSSFFFVPT 211

[Close]

BLAST of CSPI04G12580.1 vs. TrEMBL
Match: A0A067EKK6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g023169mg PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 6.7e-27
Identity = 77/147 (52.38%), Postives = 94/147 (63.95%), Query Frame = 1


Query: 1   MESSVEKQEHRDVAF-KLVGKCIKKRSGKRSFVGVRQRPSGKWVAEIKDATHDIRMWLGT 60
           M   V++Q  + V+  K+  K       K  FVGVRQRPSGKWVAEIKD T  IRMWLGT
Sbjct: 1   MGQQVQRQRPKGVSSAKIKAKSSTNPGNKSKFVGVRQRPSGKWVAEIKDTTKKIRMWLGT 60

Query: 61  FNTPEEAARAYDEAACLLRGSNARTNFTLASNSSSALSFKIRNLLIHKITLKRSSITETH 120
           F T EEAARAYDEAACLLRGSN RTNF     ++S +S KIRNLL HK +LK+SS + T 
Sbjct: 61  FETAEEAARAYDEAACLLRGSNTRTNFATPVFTNSHISLKIRNLLNHKRSLKQSSPSTTT 120

Query: 121 AHVAHSET--NQEMHMFDNNAVWSSCN 145
           +  +++         + DNN+   S N
Sbjct: 121 STGSNTTAPIKPSTIVCDNNSSLGSSN 147

[Close]

BLAST of CSPI04G12580.1 vs. TrEMBL
Match: B9GY71_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s21090g PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.1e-26
Identity = 68/101 (67.33%), Postives = 76/101 (75.25%), Query Frame = 1


Query: 16  KLVGKCIKKRSGKRSFVGVRQRPSGKWVAEIKDATHDIRMWLGTFNTPEEAARAYDEAAC 75
           K   +C+   S K  FVGVRQRPSGKWVAEIKD T  IRMWLGTF T EEAARAYDEAAC
Sbjct: 20  KFKERCLSNNS-KNKFVGVRQRPSGKWVAEIKDTTQKIRMWLGTFETAEEAARAYDEAAC 79

Query: 76  LLRGSNARTNFTLASNSSSALSFKIRNLLIHKITLKRSSIT 117
           LLRGSN RTNF    +S+S +S KIRNLL  K +LK++S T
Sbjct: 80  LLRGSNTRTNFNTHVSSNSPISTKIRNLLNRKRSLKQNSST 119

[Close]

BLAST of CSPI04G12580.1 vs. TrEMBL
Match: D7SLK5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g00490 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 2.0e-26
Identity = 83/164 (50.61%), Postives = 99/164 (60.37%), Query Frame = 1


Query: 20  KCIKKRSGKRSFVGVRQRPSGKWVAEIKDATHDIRMWLGTFNTPEEAARAYDEAACLLRG 79
           KC K  SGK  FVGVRQRPSGKWVAEIK+ T  IRMWLGTFNT EEAARAYDEAACLLRG
Sbjct: 29  KCSK--SGK--FVGVRQRPSGKWVAEIKNTTQKIRMWLGTFNTAEEAARAYDEAACLLRG 88

Query: 80  SNARTNFTLASNSSSALSFKIRNLLIHKITLKR-------------------SSITETHA 139
           SN RTNF   + ++S LS KIRNLL  K +LK+                   +S T  ++
Sbjct: 89  SNTRTNFATHAPTNSPLSLKIRNLLHRKKSLKQNHPPPPAALTTIPTEMSTGASSTSGNS 148

Query: 140 HV-----AHSETNQEMHMFDN--NAVWSSCNGEIEVGFCHFTHS 158
           H      A +   Q++ MFD+      S+C GE+ +G   F  S
Sbjct: 149 HSINASHASNVVKQDIQMFDDAYRPDLSNCIGELRLGSSQFDPS 188

[Close]

BLAST of CSPI04G12580.1 vs. TrEMBL
Match: A0A067L4B8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01876 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 4.3e-26
Identity = 63/89 (70.79%), Postives = 72/89 (80.90%), Query Frame = 1


Query: 25  RSGKRSFVGVRQRPSGKWVAEIKDATHDIRMWLGTFNTPEEAARAYDEAACLLRGSNART 84
           ++ K  FVGVRQRPSGKWVAEIKD T  IRMWLGTF+T EEAARAYDEAACLLRGSN RT
Sbjct: 27  KNSKTKFVGVRQRPSGKWVAEIKDTTQKIRMWLGTFDTAEEAARAYDEAACLLRGSNTRT 86

Query: 85  NFTLASNSSSALSFKIRNLLIHKITLKRS 114
           NFT   +++S +S KIRNLL HK   K++
Sbjct: 87  NFTNHVSTNSPISIKIRNLLNHKKNSKQN 115

[Close]

BLAST of CSPI04G12580.1 vs. TAIR10
Match: AT5G19790.1 (AT5G19790.1 related to AP2 11)

HSP 1 Score: 122.9 bits (307), Expect = 2.4e-28
Identity = 63/90 (70.00%), Postives = 69/90 (76.67%), Query Frame = 1


Query: 23  KKRSGKRSFVGVRQRPSGKWVAEIKDATHDIRMWLGTFNTPEEAARAYDEAACLLRGSNA 82
           K +  K  FVGVRQRPSGKWVAEIKD T  IRMWLGTF T EEAARAYDEAACLLRGSN 
Sbjct: 14  KSKGNKTKFVGVRQRPSGKWVAEIKDTTQKIRMWLGTFETAEEAARAYDEAACLLRGSNT 73

Query: 83  RTNFTLASNSSSALSFKIRNLLIHKITLKR 113
           RTNF     ++S LS KIRNLL  K ++K+
Sbjct: 74  RTNFANHFPNNSQLSLKIRNLLHQKQSMKQ 103

[Close]

BLAST of CSPI04G12580.1 vs. TAIR10
Match: AT4G23750.1 (AT4G23750.1 cytokinin response factor 2)

HSP 1 Score: 82.0 bits (201), Expect = 4.8e-16
Identity = 37/69 (53.62%), Postives = 50/69 (72.46%), Query Frame = 1


Query: 26  SGKRSFVGVRQRPSGKWVAEIKDATHDIRMWLGTFNTPEEAARAYDEAACLLRGSNARTN 85
           +G++ F GVRQRP GKW AEI+D    +R+WLGT+NT EEAA  YD AA  LRG +A TN
Sbjct: 117 TGEKKFRGVRQRPWGKWAAEIRDPLKRVRLWLGTYNTAEEAAMVYDNAAIQLRGPDALTN 176

Query: 86  FTLASNSSS 95
           F++   +++
Sbjct: 177 FSVTPTTAT 185

[Close]

BLAST of CSPI04G12580.1 vs. TAIR10
Match: AT1G15360.1 (AT1G15360.1 Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 79.7 bits (195), Expect = 2.4e-15
Identity = 40/69 (57.97%), Postives = 48/69 (69.57%), Query Frame = 1


Query: 29 RSFVGVRQRPSGKWVAEIKDATHDIRMWLGTFNTPEEAARAYDEAACLLRGSNARTNFTL 88
          + F GVRQR  G WVAEI+      R+WLGTF T EEAARAYDEAA L+ G NA+TNF L
Sbjct: 5  KKFRGVRQRHWGSWVAEIRHPLLKRRIWLGTFETAEEAARAYDEAAVLMSGRNAKTNFPL 64

Query: 89 ASNSSSALS 98
           +N++   S
Sbjct: 65 NNNNTGETS 73

[Close]

BLAST of CSPI04G12580.1 vs. TAIR10
Match: AT3G14230.1 (AT3G14230.1 related to AP2 2)

HSP 1 Score: 79.7 bits (195), Expect = 2.4e-15
Identity = 39/70 (55.71%), Postives = 46/70 (65.71%), Query Frame = 1


Query: 24  KRSGKRSFVGVRQRPSGKWVAEIKDATHDIRMWLGTFNTPEEAARAYDEAACLLRGSNAR 83
           KR  K  + G+RQRP GKW AEI+D     R WLGTF+T EEAARAYD AA  +RG+ A+
Sbjct: 121 KRKRKNQYRGIRQRPWGKWAAEIRDPRKGSREWLGTFDTAEEAARAYDAAARRIRGTKAK 180

Query: 84  TNFTLASNSS 94
            NF    N S
Sbjct: 181 VNFPEEKNPS 190

[Close]

BLAST of CSPI04G12580.1 vs. TAIR10
Match: AT4G34410.1 (AT4G34410.1 redox responsive transcription factor 1)

HSP 1 Score: 79.3 bits (194), Expect = 3.1e-15
Identity = 46/97 (47.42%), Postives = 58/97 (59.79%), Query Frame = 1


Query: 3   SSVEKQEHRDVAFKLVG--KCIKKRSGKRSFVGVRQRPSGKWVAEIKDATHDIRMWLGTF 62
           SS  ++E   VA K  G  K  K+++ K  + GVRQRP GK+ AEI+D     R+WLGTF
Sbjct: 106 SSNRRRESSPVAKKAEGGGKIRKRKNKKNGYRGVRQRPWGKFAAEIRDPKRATRVWLGTF 165

Query: 63  NTPEEAARAYDEAACLLRGSNARTNFTLASNSSSALS 98
            T E+AARAYD AA   RG  A+ NF     +SS  S
Sbjct: 166 ETAEDAARAYDRAAIGFRGPRAKLNFPFVDYTSSVSS 202

[Close]

BLAST of CSPI04G12580.1 vs. NCBI nr
Match: gi|449463881|ref|XP_004149659.1| (PREDICTED: ethylene-responsive transcription factor ERF087 [Cucumis sativus])

HSP 1 Score: 430.6 bits (1106), Expect = 1.5e-117
Identity = 210/211 (99.53%), Postives = 211/211 (100.00%), Query Frame = 1


Query: 1   MESSVEKQEHRDVAFKLVGKCIKKRSGKRSFVGVRQRPSGKWVAEIKDATHDIRMWLGTF 60
           MESSVEKQEHRDVAFKLVGKCIKKRSGKRSFVGVRQRPSGKWVAEIKDATHDIRMWLGTF
Sbjct: 1   MESSVEKQEHRDVAFKLVGKCIKKRSGKRSFVGVRQRPSGKWVAEIKDATHDIRMWLGTF 60

Query: 61  NTPEEAARAYDEAACLLRGSNARTNFTLASNSSSALSFKIRNLLIHKITLKRSSITETHA 120
           NTPEEAARAYDEAACLLRGSNARTNFTLASNSSSALSFKIRNLLIHKITLKRSSITETHA
Sbjct: 61  NTPEEAARAYDEAACLLRGSNARTNFTLASNSSSALSFKIRNLLIHKITLKRSSITETHA 120

Query: 121 HVAHSETNQEMHMFDNNAVWSSCNGEIEVGFCHFTHSCCDLPLGFNFDMDESLSALNGIT 180
           HVAHSETNQEMHMFDNNAVWSSCNGEIEVGFCHFTHSCCDLPLGFNFDMDESLSALNGIT
Sbjct: 121 HVAHSETNQEMHMFDNNAVWSSCNGEIEVGFCHFTHSCCDLPLGFNFDMDESLSALNGIT 180

Query: 181 QHLGNAYDDAFETPAAHIDYTDFSSFFFVPT 212
           QHLGNAYDDAF+TPAAHIDYTDFSSFFFVPT
Sbjct: 181 QHLGNAYDDAFDTPAAHIDYTDFSSFFFVPT 211

[Close]

BLAST of CSPI04G12580.1 vs. NCBI nr
Match: gi|659098050|ref|XP_008449953.1| (PREDICTED: ethylene-responsive transcription factor RAP2-11 [Cucumis melo])

HSP 1 Score: 398.3 bits (1022), Expect = 8.5e-108
Identity = 194/211 (91.94%), Postives = 200/211 (94.79%), Query Frame = 1


Query: 1   MESSVEKQEHRDVAFKLVGKCIKKRSGKRSFVGVRQRPSGKWVAEIKDATHDIRMWLGTF 60
           ME SVEKQE RDVAFKLVGKCIKKRSGKRSFVGVRQRPSGKWVAEIKDATHDIRMWLGTF
Sbjct: 1   MEGSVEKQERRDVAFKLVGKCIKKRSGKRSFVGVRQRPSGKWVAEIKDATHDIRMWLGTF 60

Query: 61  NTPEEAARAYDEAACLLRGSNARTNFTLASNSSSALSFKIRNLLIHKITLKRSSITETHA 120
           NT EEAARAYDEAACLLRGSNARTNFTLASNSSS LSFKIRNLLIHKITLKRSSITETHA
Sbjct: 61  NTAEEAARAYDEAACLLRGSNARTNFTLASNSSSTLSFKIRNLLIHKITLKRSSITETHA 120

Query: 121 HVAHSETNQEMHMFDNNAVWSSCNGEIEVGFCHFTHSCCDLPLGFNFDMDESLSALNGIT 180
           HVAHSETNQE HMFDN+ VW+SCNGEIEVGFCHFTHSCC LPLGFNFDMDESLSA NGIT
Sbjct: 121 HVAHSETNQETHMFDNDTVWNSCNGEIEVGFCHFTHSCCHLPLGFNFDMDESLSAPNGIT 180

Query: 181 QHLGNAYDDAFETPAAHIDYTDFSSFFFVPT 212
           +HLGN YDDAF+T +A +DYTDFSSFFFVPT
Sbjct: 181 EHLGNTYDDAFDTSSAQLDYTDFSSFFFVPT 211

[Close]

BLAST of CSPI04G12580.1 vs. NCBI nr
Match: gi|641835470|gb|KDO54445.1| (hypothetical protein CISIN_1g023169mg [Citrus sinensis])

HSP 1 Score: 129.0 bits (323), Expect = 9.6e-27
Identity = 77/147 (52.38%), Postives = 94/147 (63.95%), Query Frame = 1


Query: 1   MESSVEKQEHRDVAF-KLVGKCIKKRSGKRSFVGVRQRPSGKWVAEIKDATHDIRMWLGT 60
           M   V++Q  + V+  K+  K       K  FVGVRQRPSGKWVAEIKD T  IRMWLGT
Sbjct: 1   MGQQVQRQRPKGVSSAKIKAKSSTNPGNKSKFVGVRQRPSGKWVAEIKDTTKKIRMWLGT 60

Query: 61  FNTPEEAARAYDEAACLLRGSNARTNFTLASNSSSALSFKIRNLLIHKITLKRSSITETH 120
           F T EEAARAYDEAACLLRGSN RTNF     ++S +S KIRNLL HK +LK+SS + T 
Sbjct: 61  FETAEEAARAYDEAACLLRGSNTRTNFATPVFTNSHISLKIRNLLNHKRSLKQSSPSTTT 120

Query: 121 AHVAHSET--NQEMHMFDNNAVWSSCN 145
           +  +++         + DNN+   S N
Sbjct: 121 STGSNTTAPIKPSTIVCDNNSSLGSSN 147

[Close]

BLAST of CSPI04G12580.1 vs. NCBI nr
Match: gi|568871662|ref|XP_006489001.1| (PREDICTED: ethylene-responsive transcription factor RAP2-11 [Citrus sinensis])

HSP 1 Score: 129.0 bits (323), Expect = 9.6e-27
Identity = 77/147 (52.38%), Postives = 94/147 (63.95%), Query Frame = 1


Query: 1   MESSVEKQEHRDVAF-KLVGKCIKKRSGKRSFVGVRQRPSGKWVAEIKDATHDIRMWLGT 60
           M   V++Q  + V+  K+  K       K  FVGVRQRPSGKWVAEIKD T  IRMWLGT
Sbjct: 1   MGQQVQRQRPKGVSSAKIKAKSSTNPGNKSKFVGVRQRPSGKWVAEIKDTTKKIRMWLGT 60

Query: 61  FNTPEEAARAYDEAACLLRGSNARTNFTLASNSSSALSFKIRNLLIHKITLKRSSITETH 120
           F T EEAARAYDEAACLLRGSN RTNF     ++S +S KIRNLL HK +LK+SS + T 
Sbjct: 61  FETAEEAARAYDEAACLLRGSNTRTNFATPVFTNSHISLKIRNLLNHKRSLKQSSPSTTT 120

Query: 121 AHVAHSET--NQEMHMFDNNAVWSSCN 145
           +  +++         + DNN+   S N
Sbjct: 121 STGSNTTAPIKPSTIVCDNNSSLGSSN 147

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BLAST of CSPI04G12580.1 vs. NCBI nr
Match: gi|923598038|ref|XP_013740238.1| (PREDICTED: ethylene-responsive transcription factor RAP2-11-like [Brassica napus])

HSP 1 Score: 128.3 bits (321), Expect = 1.6e-26
Identity = 70/106 (66.04%), Postives = 74/106 (69.81%), Query Frame = 1


Query: 6   EKQEHRDVAFKLVGKCIKKRSGKRSFVGVRQRPSGKWVAEIKDATHDIRMWLGTFNTPEE 65
           EK EH     K   K   K + K  FVGVRQRPSGKWVAEIKD T  IRMWLGTF T EE
Sbjct: 7   EKMEHHQTTQKQKIKKKSKGTNKTKFVGVRQRPSGKWVAEIKDTTQKIRMWLGTFETAEE 66

Query: 66  AARAYDEAACLLRGSNARTNFTLASNSSSALSFKIRNLLIHKITLK 112
           AARAYDEAACLLRGSN RTNF     ++S LS KIRNLL  K +LK
Sbjct: 67  AARAYDEAACLLRGSNTRTNFANHFPNNSQLSLKIRNLLHQKQSLK 112

The following BLAST results are available for this feature:

BLAST of CSPI04G12580.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RA211_ARATH	4.3e-27	70.00	Ethylene-responsive transcription factor RAP2-11 OS=Arabidopsis thaliana GN=RAP2...	[more]
CRF2_ARATH	8.4e-15	53.62	Ethylene-responsive transcription factor CRF2 OS=Arabidopsis thaliana GN=CRF2 PE...	[more]
ERF1_ORYSJ	1.9e-14	54.29	Ethylene-responsive transcription factor 1 OS=Oryza sativa subsp. japonica GN=ER...	[more]
WIN1_ARATH	4.2e-14	57.97	Ethylene-responsive transcription factor WIN1 OS=Arabidopsis thaliana GN=WIN1 PE...	[more]
RAP22_ARATH	4.2e-14	55.71	Ethylene-responsive transcription factor RAP2-2 OS=Arabidopsis thaliana GN=RAP2-...	[more]

BLAST of CSPI04G12580.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L1N6_CUCSA	1.1e-117	99.53	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G268100 PE=4 SV=1	[more]
A0A067EKK6_CITSI	6.7e-27	52.38	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g023169mg PE=4 SV=1	[more]
B9GY71_POPTR	1.1e-26	67.33	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s21090g PE=4 SV=1	[more]
D7SLK5_VITVI	2.0e-26	50.61	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g00490 PE=4 SV=...	[more]
A0A067L4B8_JATCU	4.3e-26	70.79	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01876 PE=4 SV=1	[more]

BLAST of CSPI04G12580.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G19790.1	2.4e-28	70.00	related to AP2 11	[more]
AT4G23750.1	4.8e-16	53.62	cytokinin response factor 2	[more]
AT1G15360.1	2.4e-15	57.97	Integrase-type DNA-binding superfamily protein	[more]
AT3G14230.1	2.4e-15	55.71	related to AP2 2	[more]
AT4G34410.1	3.1e-15	47.42	redox responsive transcription factor 1	[more]

BLAST of CSPI04G12580.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449463881\|ref\|XP_004149659.1\|	1.5e-117	99.53	PREDICTED: ethylene-responsive transcription factor ERF087 [Cucumis sativus]	[more]
gi\|659098050\|ref\|XP_008449953.1\|	8.5e-108	91.94	PREDICTED: ethylene-responsive transcription factor RAP2-11 [Cucumis melo]	[more]
gi\|641835470\|gb\|KDO54445.1\|	9.6e-27	52.38	hypothetical protein CISIN_1g023169mg [Citrus sinensis]	[more]
gi\|568871662\|ref\|XP_006489001.1\|	9.6e-27	52.38	PREDICTED: ethylene-responsive transcription factor RAP2-11 [Citrus sinensis]	[more]
gi\|923598038\|ref\|XP_013740238.1\|	1.6e-26	66.04	PREDICTED: ethylene-responsive transcription factor RAP2-11-like [Brassica napus...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR001471	AP2/ERF_dom
IPR016177	DNA-bd_dom_sf
IPR017392	AP2/ERF-transcript_factor

Vocabulary: **Molecular Function**
Term	Definition
GO:0003700	transcription factor activity, sequence-specific DNA binding
GO:0003677	DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI04G12580	CSPI04G12580	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI04G12580.1	CSPI04G12580.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI04G12580.1.cds1	CSPI04G12580.1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001471	AP2/ERF domain	PRINTS	PR00367	ETHRSPELEMNT	coord: 53..69 score: 1.4E-7coord: 31..42 score: 1.
IPR001471	AP2/ERF domain	GENE3D	G3DSA:3.30.730.10		coord: 30..87 score: 1.3
IPR001471	AP2/ERF domain	PFAM	PF00847	AP2	coord: 31..79 score: 4.4
IPR001471	AP2/ERF domain	SMART	SM00380	rav1_2	coord: 30..93 score: 2.4
IPR001471	AP2/ERF domain	PROFILE	PS51032	AP2_ERF	coord: 30..87 score: 19
IPR016177	DNA-binding domain	unknown	SSF54171	DNA-binding domain	coord: 31..87 score: 2.09
IPR017392	AP2/ERF transcription factor ERF/PTI6	PANTHER	PTHR31194	SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR	coord: 28..114 score: 9.2
None	No IPR available	PANTHER	PTHR31194:SF5	SUBFAMILY NOT NAMED	coord: 28..114 score: 9.2