CSPI04G12390.1 (mRNA) Wild cucumber (PI 183967)
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.GCCAGAGATGAGCTGCTGATTACTCTAAAGCATCACTTACAACACGCCCAAGCACAAATCAAGAAATTTGCGGATGTACACCATCGAGATGTGGTGTTCGACATTAGTGATTGGGTCTATTTAAAAATACAGTCGTATAGACAGCAGTCGTTGGCTAAAAAACGATGCGAAAAGCTGTCATCAAAATATTTTGGACCCTACATGGTATTAGGGAGGGTAGGGGAAGTGGCCTATCTACTAGATCTACCAGACACTGCTCGAATCCACCCCGTGTTCCACGTGTCACAACAAAAAAAAGGCTGTGGGAGACAAGCACCATGTGCAACTAGACATCTCCTTACTCAACGACCAAATGGAATTAGTCCTCGAGCCCGAAAATGTGACTGA GCCAGAGATGAGCTGCTGATTACTCTAAAGCATCACTTACAACACGCCCAAGCACAAATCAAGAAATTTGCGGATGTACACCATCGAGATGTGGTGTTCGACATTAGTGATTGGGTCTATTTAAAAATACAGTCGTATAGACAGCAGTCGTTGGCTAAAAAACGATGCGAAAAGCTGTCATCAAAATATTTTGGACCCTACATGGTATTAGGGAGGGTAGGGGAAGTGGCCTATCTACTAGATCTACCAGACACTGCTCGAATCCACCCCGTGTTCCACGTGTCACAACAAAAAAAAGGCTGTGGGAGACAAGCACCATGTGCAACTAGACATCTCCTTACTCAACGACCAAATGGAATTAGTCCTCGAGCCCGAAAATGTGACTGA GCCAGAGATGAGCTGCTGATTACTCTAAAGCATCACTTACAACACGCCCAAGCACAAATCAAGAAATTTGCGGATGTACACCATCGAGATGTGGTGTTCGACATTAGTGATTGGGTCTATTTAAAAATACAGTCGTATAGACAGCAGTCGTTGGCTAAAAAACGATGCGAAAAGCTGTCATCAAAATATTTTGGACCCTACATGGTATTAGGGAGGGTAGGGGAAGTGGCCTATCTACTAGATCTACCAGACACTGCTCGAATCCACCCCGTGTTCCACGTGTCACAACAAAAAAAAGGCTGTGGGAGACAAGCACCATGTGCAACTAGACATCTCCTTACTCAACGACCAAATGGAATTAGTCCTCGAGCCCGAAAATGTGACTGA
BLAST of CSPI04G12390.1 vs. TrEMBL
Match: E5GC18_CUCME (Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1) HSP 1 Score: 156.4 bits (394), Expect = 2.4e-35 Identity = 72/89 (80.90%), Postives = 81/89 (91.01%), Query Frame = 1
BLAST of CSPI04G12390.1 vs. TrEMBL
Match: Q9SQW9_ARATH (Putative retroelement pol polyprotein OS=Arabidopsis thaliana GN=F23H6.1 PE=4 SV=1) HSP 1 Score: 121.3 bits (303), Expect = 8.5e-25 Identity = 56/98 (57.14%), Postives = 76/98 (77.55%), Query Frame = 1
BLAST of CSPI04G12390.1 vs. TrEMBL
Match: M4DN30_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1) HSP 1 Score: 119.8 bits (299), Expect = 2.5e-24 Identity = 56/109 (51.38%), Postives = 76/109 (69.72%), Query Frame = 1
BLAST of CSPI04G12390.1 vs. TrEMBL
Match: A0A151SSE7_CAJCA (Retrotransposable element Tf2 (Fragment) OS=Cajanus cajan GN=KK1_003948 PE=4 SV=1) HSP 1 Score: 119.4 bits (298), Expect = 3.2e-24 Identity = 57/101 (56.44%), Postives = 74/101 (73.27%), Query Frame = 1
BLAST of CSPI04G12390.1 vs. TrEMBL
Match: D1GEG7_BRARP (Disease resistance protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1) HSP 1 Score: 118.2 bits (295), Expect = 7.2e-24 Identity = 51/101 (50.50%), Postives = 73/101 (72.28%), Query Frame = 1
BLAST of CSPI04G12390.1 vs. NCBI nr
Match: gi|659130784|ref|XP_008465349.1| (PREDICTED: uncharacterized protein LOC103502989 [Cucumis melo]) HSP 1 Score: 159.1 bits (401), Expect = 5.3e-36 Identity = 76/106 (71.70%), Postives = 86/106 (81.13%), Query Frame = 1
BLAST of CSPI04G12390.1 vs. NCBI nr
Match: gi|307136175|gb|ADN34016.1| (ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo]) HSP 1 Score: 156.4 bits (394), Expect = 3.4e-35 Identity = 72/89 (80.90%), Postives = 81/89 (91.01%), Query Frame = 1
BLAST of CSPI04G12390.1 vs. NCBI nr
Match: gi|922465109|ref|XP_013633118.1| (PREDICTED: uncharacterized protein LOC106338764 [Brassica oleracea var. oleracea]) HSP 1 Score: 124.8 bits (312), Expect = 1.1e-25 Identity = 56/109 (51.38%), Postives = 78/109 (71.56%), Query Frame = 1
BLAST of CSPI04G12390.1 vs. NCBI nr
Match: gi|922559973|ref|XP_013608212.1| (PREDICTED: uncharacterized protein LOC106314967 [Brassica oleracea var. oleracea]) HSP 1 Score: 123.6 bits (309), Expect = 2.5e-25 Identity = 56/107 (52.34%), Postives = 78/107 (72.90%), Query Frame = 1
BLAST of CSPI04G12390.1 vs. NCBI nr
Match: gi|6466937|gb|AAF13073.1|AC011621_1 (putative retroelement pol polyprotein [Arabidopsis thaliana]) HSP 1 Score: 121.3 bits (303), Expect = 1.2e-24 Identity = 56/98 (57.14%), Postives = 76/98 (77.55%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
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