CSPI04G11830.2 (mRNA) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI04G11830.2
Type	mRNA
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Costars family protein abracl protein
Location	Chr4 : 10089503 .. 10091107 (-)
Sequence length	243

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGCTCAGAACCAGATCTGCCTGCCTATGCCAATTACCTGTTTGATGTTTTGCCATTATTGGGTATGAAAATTTGACAAAAAATCTGAAGTAAATGGAAACGATTCAATTGTATTGAGTTACTAGATTCATTTAGAACGGACCTGTGTGTATAACATTGCACATTCAAGCCCATTTCAAATCAGCCTGCCTTTCATTTGGGTGTCTTTTAACGTGCTAAACAATATATAATTAAATTTACCTTCACCCATAAACTTAACTTTTTTGACCAAGCTTTGATTTAAGGCTTTTTTTACCAATCCTTGATTTGATTTAAGATTGTATGAAGGTAATTAGTTCAGGAAGATGTGTTCAAGTCACTACACTGTAACATTACCTTTCACATAAGTTTAAACTCTTGGGTCAATCTAGCCTCCCCTCTTTGGATAACAAGATTGGGATCCGATCCTATATGATTTGGCCATGCTTAATTGGAGTATGATAACTTGGCTTATTCCATATCTGAGCATTTAATTTCAATGTTTTCCTTTTTCTCACTTTCTAAAATTGGGTCAGAATCAGAGAATCTGAAAGATGATCGTAGCGATGAACGTTTCAGAAACATTGCCCACCAGATAGTTGATGGGCAGCTTCATTTTTATTTCCTTCTCATTAGATTTTCAAGAGAAGGGTTCTCTAATACAATGAAGTATTTAGAACTGAGATGTATCTGCCAACAATGCTGAAACTAGTTCTTTGCAGTTGTCAATAACTTCTCCAAATTTGTGCCTGTTCTAATCAAATGTTTCGAACTAGATGCATCTGCTAGCTGTGTTGAAACTGAAACTACTTCTTTGCAGCTGAAAAGTCAGATTTCATATGGCGTTATCCAAACATTACAGTGGAGAAACTCATGAACCAAAAACTTACACTTCCTTCGAGCTTTCTTGTAGTGGTTGCCGGTTGGCCAACAGAAAGCTCGTTAAGCTTCATTTTCTTCCCCCTCCCCTCCATTTTTCAATGAGTGGAGGGTCTTCACTTAGTAGTTGGCATTCTATAAGCAATTTCTCGAATCTCCAAACCATTCGATCTTGTAGTCGACCCATGATCCTTCCCTTTATTTTCTGGCGTGCCTGTTTCTATTTCTAGAAGCTAACTGTTCAAGCATTTGGAATTTCAATTTTCAGGTAACATTTGGGGTGTTGTTCAATGATGATAGATGTGCTAACATATTCGAAGCACTGGTCGGGACGCTAAGAGCAGCAAAGAAGAGAAAAATAGTGAGTTATGATGGTGAATTGTTGCTGCAAGGAGTTCATGATAACGTTGAGATCATTCTCAAAGCCATTCCAACAACAGAAGTTGCATCCACTGCAGCTGTAAAGACGGCCTGAGTAGTGATGGATTCATATGTAATATGAAAAAGCAGTTCTTGCAATTTGCATCTTCAATTTCTATGTTTTATAATCAATATGGAGTATAACAATTTTCATTTAGTTACATGTTTATTAAATTCCTCGTGTTCCAGATATGATAACTTTTGCAAGGGAAAATAATTTATCAAATGGCGGAATTGTTCTAATGGGAGAAGTAATTAAGAATACCAATTTACACTCGCAGAGAGCACA

mRNA sequence

ATGCCAATTACCTGTTTGATGTTTTGCCATTATTGGGTAACATTTGGGGTGTTGTTCAATGATGATAGATGTGCTAACATATTCGAAGCACTGGTCGGGACGCTAAGAGCAGCAAAGAAGAGAAAAATAGTGAGTTATGATGGTGAATTGTTGCTGCAAGGAGTTCATGATAACGTTGAGATCATTCTCAAAGCCATTCCAACAACAGAAGTTGCATCCACTGCAGCTGTAAAGACGGCCTGA

Coding sequence (CDS)

ATGCCAATTACCTGTTTGATGTTTTGCCATTATTGGGTAACATTTGGGGTGTTGTTCAATGATGATAGATGTGCTAACATATTCGAAGCACTGGTCGGGACGCTAAGAGCAGCAAAGAAGAGAAAAATAGTGAGTTATGATGGTGAATTGTTGCTGCAAGGAGTTCATGATAACGTTGAGATCATTCTCAAAGCCATTCCAACAACAGAAGTTGCATCCACTGCAGCTGTAAAGACGGCCTGA

Homology

[Close]

BLAST of CSPI04G11830.2 vs. Swiss-Prot
Match: COSA_PICSI (Costars family protein WS02710_H03 OS=Picea sitchensis PE=3 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 5.1e-21
Identity = 49/58 (84.48%), Postives = 53/58 (91.38%), Query Frame = 1


Query: 11 YWVTFGVLFNDDRCANIFEALVGTLRAAKKRKIVSYDGELLLQGVHDNVEIILKAIPT 69
          Y V FGVLF+DDRCANIFEALVGTLRAAKKRK+V+YDGELLLQGVHDNVEI+L   PT
Sbjct: 28 YVVKFGVLFSDDRCANIFEALVGTLRAAKKRKVVTYDGELLLQGVHDNVEIVLLKPPT 85

[Close]

BLAST of CSPI04G11830.2 vs. Swiss-Prot
Match: COSA_ARATH (Costars family protein At4g33640 OS=Arabidopsis thaliana GN=At4g33640 PE=1 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 8.8e-21
Identity = 50/70 (71.43%), Postives = 57/70 (81.43%), Query Frame = 1


Query: 11 YWVTFGVLFNDDRCANIFEALVGTLRAAKKRKIVSYDGELLLQGVHDNVEIILKAIPTTE 70
          Y VTFGVLFNDDRCANIFEALVGTLRAAKKRKIV+++GELLLQGVHD VEI L+  P   
Sbjct: 26 YKVTFGVLFNDDRCANIFEALVGTLRAAKKRKIVAFEGELLLQGVHDKVEITLRPTPPPP 85

Query: 71 VASTAAVKTA 81
           A+ A   ++
Sbjct: 86 QAAAATAASS 95

[Close]

BLAST of CSPI04G11830.2 vs. Swiss-Prot
Match: COSA_ORYSI (Costars family protein OS=Oryza sativa subsp. indica GN=OsI_012692 PE=3 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 8.8e-21
Identity = 50/62 (80.65%), Postives = 51/62 (82.26%), Query Frame = 1


Query: 11 YWVTFGVLFNDDRCANIFEALVGTLRAAKKRKIVSYDGELLLQGVHDNVEIILKAIPTTE 70
          Y VTFGV+FNDDRCANIFEALVGTLRAAKKRKIV YDGELLLQG HDNVEI L   P   
Sbjct: 26 YKVTFGVIFNDDRCANIFEALVGTLRAAKKRKIVKYDGELLLQGAHDNVEITLLPPPAVA 85

Query: 71 VA 73
           A
Sbjct: 86 AA 87

[Close]

BLAST of CSPI04G11830.2 vs. Swiss-Prot
Match: COSA_ORYSJ (Costars family protein OS=Oryza sativa subsp. japonica GN=Os03g0690000 PE=3 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 8.8e-21
Identity = 50/62 (80.65%), Postives = 51/62 (82.26%), Query Frame = 1


Query: 11 YWVTFGVLFNDDRCANIFEALVGTLRAAKKRKIVSYDGELLLQGVHDNVEIILKAIPTTE 70
          Y VTFGV+FNDDRCANIFEALVGTLRAAKKRKIV YDGELLLQG HDNVEI L   P   
Sbjct: 26 YKVTFGVIFNDDRCANIFEALVGTLRAAKKRKIVKYDGELLLQGAHDNVEITLLPPPAVA 85

Query: 71 VA 73
           A
Sbjct: 86 AA 87

[Close]

BLAST of CSPI04G11830.2 vs. Swiss-Prot
Match: COSA_EUTHA (Costars family protein ST45-2 OS=Eutrema halophilum PE=3 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 7.4e-20
Identity = 50/65 (76.92%), Postives = 53/65 (81.54%), Query Frame = 1


Query: 11 YWVTFGVLFNDDRCANIFEALVGTLRAAKKRKIVSYDGELLLQGVHDNVEIILKAIPTTE 70
          Y VTFGVLFNDDRCANIFEALVGTLRAAKKRKIV++ GELLLQGVHD VEI L+  P   
Sbjct: 26 YKVTFGVLFNDDRCANIFEALVGTLRAAKKRKIVAFPGELLLQGVHDKVEITLRPPPPPP 85

Query: 71 VASTA 76
           A  A
Sbjct: 86 QAVAA 90

[Close]

BLAST of CSPI04G11830.2 vs. TrEMBL
Match: A0A0A0KWI0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G182240 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 1.8e-28
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 1


Query: 13 VTFGVLFNDDRCANIFEALVGTLRAAKKRKIVSYDGELLLQGVHDNVEIILKAIPTTEVA 72
          VTFGVLFNDDRCANIFEALVGTLRAAKKRKIVSYDGELLLQGVHDNVEIILKAIPTTEVA
Sbjct: 24 VTFGVLFNDDRCANIFEALVGTLRAAKKRKIVSYDGELLLQGVHDNVEIILKAIPTTEVA 83

Query: 73 STAAVKTA 81
          STAAVKTA
Sbjct: 84 STAAVKTA 91

[Close]

BLAST of CSPI04G11830.2 vs. TrEMBL
Match: B9HEA7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s03140g PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 9.4e-22
Identity = 56/70 (80.00%), Postives = 62/70 (88.57%), Query Frame = 1


Query: 11 YWVTFGVLFNDDRCANIFEALVGTLRAAKKRKIVSYDGELLLQGVHDNVEIILKA--IPT 70
          Y VTFGVLFNDDRCANIFEALVGTLRAAKKRK ++YDGELLLQGVHDNVEIILKA  +P 
Sbjct: 26 YKVTFGVLFNDDRCANIFEALVGTLRAAKKRKFLTYDGELLLQGVHDNVEIILKAAPLPA 85

Query: 71 TEVASTAAVK 79
          +E A+ + VK
Sbjct: 86 SEAATDSVVK 95

[Close]

BLAST of CSPI04G11830.2 vs. TrEMBL
Match: A0A067KCM6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18762 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.2e-21
Identity = 57/70 (81.43%), Postives = 62/70 (88.57%), Query Frame = 1


Query: 11 YWVTFGVLFNDDRCANIFEALVGTLRAAKKRKIVSYDGELLLQGVHDNVEIILK--AIPT 70
          Y VTFGVLFNDDRCANIFEALVGTLRAAKKRKIV+YDGELLLQGVHDNVEI LK  + P 
Sbjct: 26 YKVTFGVLFNDDRCANIFEALVGTLRAAKKRKIVTYDGELLLQGVHDNVEITLKPTSQPA 85

Query: 71 TEVASTAAVK 79
          T  A+T+A+K
Sbjct: 86 TATAATSAMK 95

[Close]

BLAST of CSPI04G11830.2 vs. TrEMBL
Match: B9S9L9_RICCO (Protein C6orf115, putative OS=Ricinus communis GN=RCOM_0886770 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 1.6e-21
Identity = 55/65 (84.62%), Postives = 58/65 (89.23%), Query Frame = 1


Query: 11 YWVTFGVLFNDDRCANIFEALVGTLRAAKKRKIVSYDGELLLQGVHDNVEIILKAIPTTE 70
          Y VTFGVLFNDDRCANIFEALVGTLRAAKKRKI++YDGELLLQGVHDNVEIILKA P   
Sbjct: 26 YKVTFGVLFNDDRCANIFEALVGTLRAAKKRKILTYDGELLLQGVHDNVEIILKAAPEPA 85

Query: 71 VASTA 76
           A+ A
Sbjct: 86 SATAA 90

[Close]

BLAST of CSPI04G11830.2 vs. TrEMBL
Match: A0A061E247_THECC (C6orf115, putative OS=Theobroma cacao GN=TCM_007362 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 2.1e-21
Identity = 53/65 (81.54%), Postives = 59/65 (90.77%), Query Frame = 1


Query: 11 YWVTFGVLFNDDRCANIFEALVGTLRAAKKRKIVSYDGELLLQGVHDNVEIILKAIPTTE 70
          Y VTFGVLFNDDRCANIFEALVGTLRAAKKRK+++YDGELLLQGVHDNVEI LKAIP   
Sbjct: 26 YKVTFGVLFNDDRCANIFEALVGTLRAAKKRKVLTYDGELLLQGVHDNVEITLKAIPPPA 85

Query: 71 VASTA 76
           A+++
Sbjct: 86 TAASS 90

[Close]

BLAST of CSPI04G11830.2 vs. TAIR10
Match: AT4G33640.1 (AT4G33640.1 unknown protein)

HSP 1 Score: 100.5 bits (249), Expect = 4.9e-22
Identity = 50/70 (71.43%), Postives = 57/70 (81.43%), Query Frame = 1


Query: 11 YWVTFGVLFNDDRCANIFEALVGTLRAAKKRKIVSYDGELLLQGVHDNVEIILKAIPTTE 70
          Y VTFGVLFNDDRCANIFEALVGTLRAAKKRKIV+++GELLLQGVHD VEI L+  P   
Sbjct: 26 YKVTFGVLFNDDRCANIFEALVGTLRAAKKRKIVAFEGELLLQGVHDKVEITLRPTPPPP 85

Query: 71 VASTAAVKTA 81
           A+ A   ++
Sbjct: 86 QAAAATAASS 95

[Close]

BLAST of CSPI04G11830.2 vs. NCBI nr
Match: gi|778692368|ref|XP_011653450.1| (PREDICTED: costars family protein [Cucumis sativus])

HSP 1 Score: 134.4 bits (337), Expect = 8.8e-29
Identity = 69/70 (98.57%), Postives = 69/70 (98.57%), Query Frame = 1


Query: 11 YWVTFGVLFNDDRCANIFEALVGTLRAAKKRKIVSYDGELLLQGVHDNVEIILKAIPTTE 70
          Y VTFGVLFNDDRCANIFEALVGTLRAAKKRKIVSYDGELLLQGVHDNVEIILKAIPTTE
Sbjct: 26 YKVTFGVLFNDDRCANIFEALVGTLRAAKKRKIVSYDGELLLQGVHDNVEIILKAIPTTE 85

Query: 71 VASTAAVKTA 81
          VASTAAVKTA
Sbjct: 86 VASTAAVKTA 95

[Close]

BLAST of CSPI04G11830.2 vs. NCBI nr
Match: gi|700198735|gb|KGN53893.1| (hypothetical protein Csa_4G182240 [Cucumis sativus])

HSP 1 Score: 132.9 bits (333), Expect = 2.5e-28
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 1


Query: 13 VTFGVLFNDDRCANIFEALVGTLRAAKKRKIVSYDGELLLQGVHDNVEIILKAIPTTEVA 72
          VTFGVLFNDDRCANIFEALVGTLRAAKKRKIVSYDGELLLQGVHDNVEIILKAIPTTEVA
Sbjct: 24 VTFGVLFNDDRCANIFEALVGTLRAAKKRKIVSYDGELLLQGVHDNVEIILKAIPTTEVA 83

Query: 73 STAAVKTA 81
          STAAVKTA
Sbjct: 84 STAAVKTA 91

[Close]

BLAST of CSPI04G11830.2 vs. NCBI nr
Match: gi|659108934|ref|XP_008454461.1| (PREDICTED: costars family protein [Cucumis melo])

HSP 1 Score: 129.8 bits (325), Expect = 2.2e-27
Identity = 66/70 (94.29%), Postives = 68/70 (97.14%), Query Frame = 1


Query: 11 YWVTFGVLFNDDRCANIFEALVGTLRAAKKRKIVSYDGELLLQGVHDNVEIILKAIPTTE 70
          Y VTFGVLFNDDRCANIFEALVGTLRAAKKRKIV+YDGELLLQGVHD VEIILKAIPTTE
Sbjct: 26 YKVTFGVLFNDDRCANIFEALVGTLRAAKKRKIVTYDGELLLQGVHDKVEIILKAIPTTE 85

Query: 71 VASTAAVKTA 81
          VA+TAAVKTA
Sbjct: 86 VATTAAVKTA 95

[Close]

BLAST of CSPI04G11830.2 vs. NCBI nr
Match: gi|1009151438|ref|XP_015893552.1| (PREDICTED: costars family protein-like [Ziziphus jujuba])

HSP 1 Score: 112.8 bits (281), Expect = 2.7e-22
Identity = 55/66 (83.33%), Postives = 60/66 (90.91%), Query Frame = 1


Query: 11 YWVTFGVLFNDDRCANIFEALVGTLRAAKKRKIVSYDGELLLQGVHDNVEIILKAIPTTE 70
          Y VTFGVLFNDD+CANIFEALVGTLRAAKKRK+++YDGELLLQGVHDNVEIILK  PTT 
Sbjct: 26 YKVTFGVLFNDDKCANIFEALVGTLRAAKKRKVLTYDGELLLQGVHDNVEIILKPPPTTS 85

Query: 71 VASTAA 77
           A+ AA
Sbjct: 86 TATVAA 91

[Close]

BLAST of CSPI04G11830.2 vs. NCBI nr
Match: gi|1009151411|ref|XP_015893539.1| (PREDICTED: costars family protein ST45-2-like [Ziziphus jujuba])

HSP 1 Score: 111.3 bits (277), Expect = 7.9e-22
Identity = 54/64 (84.38%), Postives = 59/64 (92.19%), Query Frame = 1


Query: 13  VTFGVLFNDDRCANIFEALVGTLRAAKKRKIVSYDGELLLQGVHDNVEIILKAIPTTEVA 72
           VTFGVLFNDD+CANIFEALVGTLRAAKKRK+++YDGELLLQGVHDNVEIILK  PTT  A
Sbjct: 70  VTFGVLFNDDKCANIFEALVGTLRAAKKRKVLTYDGELLLQGVHDNVEIILKPPPTTSTA 129

Query: 73  STAA 77
           + AA
Sbjct: 130 TVAA 133

The following BLAST results are available for this feature:

BLAST of CSPI04G11830.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description
COSA_PICSI	5.1e-21	84.48	Costars family protein WS02710_H03 OS=Picea sitchensis PE=3 SV=1	[more]
COSA_ARATH	8.8e-21	71.43	Costars family protein At4g33640 OS=Arabidopsis thaliana GN=At4g33640 PE=1 SV=1	[more]
COSA_ORYSI	8.8e-21	80.65	Costars family protein OS=Oryza sativa subsp. indica GN=OsI_012692 PE=3 SV=1	[more]
COSA_ORYSJ	8.8e-21	80.65	Costars family protein OS=Oryza sativa subsp. japonica GN=Os03g0690000 PE=3 SV=1	[more]
COSA_EUTHA	7.4e-20	76.92	Costars family protein ST45-2 OS=Eutrema halophilum PE=3 SV=1	[more]

BLAST of CSPI04G11830.2 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KWI0_CUCSA	1.8e-28	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G182240 PE=4 SV=1	[more]
B9HEA7_POPTR	9.4e-22	80.00	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s03140g PE=4 SV=1	[more]
A0A067KCM6_JATCU	1.2e-21	81.43	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18762 PE=4 SV=1	[more]
B9S9L9_RICCO	1.6e-21	84.62	Protein C6orf115, putative OS=Ricinus communis GN=RCOM_0886770 PE=4 SV=1	[more]
A0A061E247_THECC	2.1e-21	81.54	C6orf115, putative OS=Theobroma cacao GN=TCM_007362 PE=4 SV=1	[more]

BLAST of CSPI04G11830.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G33640.1	4.9e-22	71.43	unknown protein	[more]

BLAST of CSPI04G11830.2 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778692368\|ref\|XP_011653450.1\|	8.8e-29	98.57	PREDICTED: costars family protein [Cucumis sativus]	[more]
gi\|700198735\|gb\|KGN53893.1\|	2.5e-28	100.00	hypothetical protein Csa_4G182240 [Cucumis sativus]	[more]
gi\|659108934\|ref\|XP_008454461.1\|	2.2e-27	94.29	PREDICTED: costars family protein [Cucumis melo]	[more]
gi\|1009151438\|ref\|XP_015893552.1\|	2.7e-22	83.33	PREDICTED: costars family protein-like [Ziziphus jujuba]	[more]
gi\|1009151411\|ref\|XP_015893539.1\|	7.9e-22	84.38	PREDICTED: costars family protein ST45-2-like [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR027817	Costars_dom

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007030	Golgi organization
biological_process	GO:0007033	vacuole organization
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI04G11830	CSPI04G11830	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI04G11830.2	CSPI04G11830.2-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI04G11830.2.utr3p1	CSPI04G11830.2.utr3p1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI04G11830.2.cds2	CSPI04G11830.2.cds2	CDS
CSPI04G11830.2.cds1	CSPI04G11830.2.cds1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI04G11830.2.utr5p1	CSPI04G11830.2.utr5p1	five_prime_UTR

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027817	Costars domain	PFAM	PF14705	Costars	coord: 10..63 score: 1.7
IPR027817	Costars domain	SMART	SM01283	Costars_2	coord: 3..64 score: 3.6
None	No IPR available	PANTHER	PTHR22739	STRIATED MUSCLE ACTIVATOR OF RHO-DEPENDENT SIGNALING-RELATED	coord: 11..76 score: 8.0