CSPI04G02440.1 (mRNA) Wild cucumber (PI 183967)
The following sequences are available for this feature:
Legend: five_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.TCTTCCTCCTTTCCACACTAAACTTCCATGGAAATTGGAGACCAAAAATGTTCATCATCAGGCTATGGCAAACCTCCATGGATGTTCAGAGGAAGGTCATTATTAATGAATTCAAAACTTCCATTTTACTTTTTCTTCATTCTCCTTTTTTTTCCCCATTTCTCAGGGCCTTGTATCAACTCCATCTTGTTAAGGCTACAACTGCTCGAGCTTGTATTCCTAAGGAGTTGAGACTTGTTGAAGCATTTGGGTATTTCTTTAATCATTGTGAATTTTGTTTAATTTCTCTGATTATTGAAGATACAATTAATGGGTGTGTTGAAATCATGAAATGTGGCTGGATTGATATGATTTAGTAGTGTGCTTTTGTTTAATGTATTCTTAAAATGTGTTGTTGCTGTCTGTTTCTCCCTCTACAGTTATACTCTTGGTGGGTTTTTTCTTGCTAACTATGATGACAGTCCAGCAGGAACTTTTGATGAGGTCTGGTTTTTCTTTTTCTTTTTCTTCTCTCTTTGCCTTCATCTTTCTTTCTTTGTTGAAACTAAATCAATGGAAATTTGGTGCTTTAGCTAATATAGAACCCCATGTTTTGATTTTGTTTTGGCAGCTTGTAGTAATTTCTGGAATTGTTTGGAACCGCCCAACCTCTTGCGCGTATGCTTTTTCTATCACCCTTTTGTTCCATTGATGATTATGAGAGTGGTTGAATGTTTAGTGGCATACTTTTGTAATTTTGTTTGGTTGATTAGTTTGATCAATGTTCTGGTTGAACCGGTTATTAAGTGAAGCTGGGTTTTTTTGGACCGGCTTGAGTCTGGTCTGCAGTGGAGTGGTGGTATAGTTTGAATGATGAGTATAAAATAAGATGAAAGGGGTTTGCAAGAACATAGAATTTGGGTAGACCTATGTCTTGTTTCTTGCTAGTTTTTTTTCTTCTACATTATTGTTGATTCTTACTTGGCTTTCTTTTATGAAAGCAGATGGGCAGCTAAGGTTCTAGTGAACAGTGCTGAAGCTTGTGATCATGGAAGAAAGGTATGGCATTTGAAGGATTGTTGATATTGATTTCTGAGGCTTGATTTGTATGGAATTTGAAACAAATTTTTGTGAACTTGTTATCATCCCATGTCTGTTTCTGTGGTAATTTGAACATTCTGAATATTGTTTGTTCTCCATCTGCCCTGTAGTCTCTTCTAACCATTCTTTACCCCCAATATATATGAGTGGAGGGATATGCCAAATTATCAATATACTACTTTTCCCAAGACACTCATATGCCATTCTTGGTTTATCCAATGAGCAAAAGAGGAGAAGTTTTTTAATTTTCATAGTACATATATGTATGGTATGGTAGAGCCTGGTAGAAATGGAAGTTATCATGCATCACTTTAGGGTTCAATGTATACATGACCCATTTGGTAAGGCCCAAATGAAATCAAGCCCACTCTGAAAGGACACAAGTTTTAGGAAAATCATTTTAAATAACAAAACTTTTAAAAATACTTTCAAATATAGCAAAATATTACAATGACTCGAATAGAGTCTATCATGGTTTATTAGATTGATTGTGATTATTTGCTATATTTTGTAAACTTTTTTTTTTTTTTTCATTTTGCTATATTTGAAAATAGCCCTAAGTTTTATAACCTTGTGTTATTGGGTGAAATTACATAATATACTCTAATGTGTACGGTAATCCTCAACTCTCGCTCTCAATCCCCTCTGCTTGCTGTTCGTTCTTTTTTTTTTTAATTTCTTTTCCTCATTCAGTGACTTACTAATGTAAATCTCTTTTTTTTTCTCCTTTTTTCTTTTAAATTCTAACCACTAATTACTACGAACATTTTAGAGGAGTGAAAACTCAAAAAAAAAAAAAAAAAAAATCAATGAGTTACGAGAGTGAGGAGCGAGAATCGAGAGTATCAATAGACATACACAATAGGATGATTTTGTAAATTCCACCTTTTCATTGGCTCATCATCTTATAACACTTTAGGGGCTACTGAAATTTAGTCTTTATTCAGAATGACTTTCTAAATATTTGAAAAGGTGTTTTTAAGCAAGCTAAGTTGGTTGTTATAGCCTGGTAGTTATAATAGTATGTGACATGTGTTCGGGTGCAAACTGTTTTAGTTTGGATTATAATAGTTTGTGTTTGGGGTGAAGATTATTTTAGTCTGAGTTGGTAATTGTAAACACTTTAACATAAGAGGGAGAGGAAGGATGGGTAAGAAACAGTATACGATAGCAAATAGGGGTTTTAAATAGTACAACTATAGATGATTGTAGGGTTTAATCCTAAGAAATGACATGAGCTTTAATAGCTCACTCCCACCAATTTCAAGTTGGGTCCTTAACACCAGTTTAGTCATTCAAAATATGTCTTTTATGATCTTAATTCCAACTTTTCAAGGTGATAACATAATGGATTACCCAGACCTTAGAAGTGGATAGCATTCTCCTTTTGACTTCCAAATGTTTGCCATAATTTTATGGCAACGATAGTTCATACTTCTCTTCAAAGTTATACTTGTAGCTTGAAAGTTTTCTGTAAGAAGGAATTCTTGAGCACCGTCCTTGTTAGATATTGTAGACTTTCAGTTTCCATAAAACCAAGATATTTTGGGGAGAGGAACGATAAGGTGTCTAGAGGGTGGGAAAGGGACCCTTAAGAGATTTGGTCCCCGATGAAATTTCATCTCTTTGGTCTTCGTTTTCGAAGCTCTTTTTTCCTTTAGAAAACATTTCTCTTAGTTGGACCCTCTTCCTTTAGTAGGGACGTTTTGTTAGGCTGGTTGTTTTTTCTGTCCTAATATATATATATATATATATATATATATATATATAGTTGTTTTATGAAAAAAATAATAAAACAATTGGCAAAGTACTAGGTAGCTATTGAAGCTATATATATAGGTGTTATAAATGGAGTGTGAAGCTTGGTTGAGTTATCTAGCACCATCAGCAGTGCCCTCTCTCTTTCATTTAGGTTTTCCTTCAATGACTTCACTATCTATGCCCCATCCTTTTATCCCAATGCTGAAATTTTTATAGTCTGTTGCCCATTTTTAGATTTTAAAGTGCTTCTTTTGCTGGGTGTAGAGTAAGACCAAGTCTTGTTTGACAATCCATAAAACCTGTCTAAAATGATATATTTGAAGAATTGAAAAATACTTTGATGCAACCGAAGTTGAACACATCGTTGTGTCGTCCACCCAAGTGTCTAATTACAAGTTGTCAGTGAAAGAAATTTCTTTTCTAAAAAAGAATGTTTTTTCTCTTTTGTGGTTTAAGGAGATGCATAGAGATGAGTGCAATCTGGTTATTATAGAACTAACGAAGAATAAATCACCAACAAGAATAATATTGATTTTGATCTTTTGTGAGGGATGACATGCAATGCCCGACATCCTACTATTTTTTTTTTTTGGGTTCATTTTTCTATTAACTTTATTGCATTCTTCTCTCTTGCAGGAAGTAGGGCTTCCAAGTCAAGTTGCTAGGTTTACAAAGGTAGGCTACAATTTTAAATATTATGGTTTTTCAATATGTAATTCCTTGATACATGCTTGATCAATGTTATCATGCTGTGACCCTTTTATTAAGAAGTATTGCAACATCCACTCACAGTAATTATTCTTCTCTATAATATTGGCAATAACAATAATCATCTGACCTTCAAACAATATACATATACTCCTGATCAGCTGGGATTCACTCAACTATTATCTCTATACACTTTTTAACATTTTGAGCAACATCAACAAGAACTAATGTATTAAACGGAAACGACGTCGTCATCTGAAACAGAGGATTGAGGCAGTTCCAAAGCATCAGAGTGAGAAAGGACTTCTCAGCTTCTTACGTGGGAATAGTAATTTCCACAACCAAAAGAATCAGGAGCATGTCCAAGTGGCTGAAGTGAAGGGTCCTACTTCAATGGATGTCTGCAATATCAACCTTTCTTTTTCTGGTGAGCTGCTTAATTATGGAGCCAATATTGCTTAATACTTCTTTTGAAAGAGAAAAAATTAGCCCTGCTCATCTCAACTACTCTTCATCAACGTCATACCTTTGATGTGTTCTGTCATATTTCTTCTGCATTGTCTTTCAGATCCTTATCATCTGATAGAATTTTATTGATCTTCTTAGGAAAGTGGCATCACTAACACTGAATATTCTGAAAACTTCAGTGCTCTAGGATTGTTGTCAAAAAATGTACAGCTCTCTGCTTGTATGTCTTGCTGATTATATCTTCCATGTTGCATCAAATCTATCTATGATAATCTTTGCGGTTGATGTGGGACATTGAACATGTTCCATGGAAAACCATAAAATAGGATGCCCTACATCAAAAAGGTTAGTTAATTTTTTAGTGGTTGATATAATGTGTTCTGATCTATATCCCTTAATTTCAAAGATTAGTGGACAGTTCTTTTTGCATGTTAAAGCGCACCATTGTGGTTTATGAACTTTTCTTTTCCTAGTCCCAACTTTCAAGGAGTAGTGAGTAAACTTTTATTGGTTGGATTTTCCTGTTCAAATTGAAAGTTCCTTGTGTTTCTGATAACAAGCTGATATTGGCAGTTCCTTTCAGCAAATGGATGGGACCAGCTATCAAAATGTCTCTCCCAAGTTATAGGTAACTGAATTTTCCAATGTATAAATGGTTATGTTTGCCAAATTTGCACTTCAGTGGCTCATGACGCTTCCATTGTTCTAAAATTTCAGTGGGCACACAGAATATACTCCTGAGCTACTCAAATATTCCTGTCAAATTCGATGCCGGTTTGTATTAAATTTAAGATAGTCAAGTTTAATATTTCTTTCAACTGGAGCATTTGAATATATAATTTGCATTTAGGGTGCGAGCTGTAAAGCCAGCAACTGTCTCGATTCCTGCATTAAACAGAGCAGAAGATGGAGACCACCATTCTCACATTACAAGAACTGGAGAATATGGGGAACATGAGCAAAGCCTTTGTACATCTGTACTATTGTCAAAACCTATACTAGCTTTAGAGTTTAGTTGCATGGAAATGCAAGTCCAAGCTCCCACTGTTGTTTCTCAATATTTTAAACACTCGCTAAGAACACCATGA ATGGAAATTGGAGACCAAAAATGTTCATCATCAGGCTATGGCAAACCTCCATGGATGTTCAGAGGAAGGGCCTTGTATCAACTCCATCTTGTTAAGGCTACAACTGCTCGAGCTTGTATTCCTAAGGAGTTGAGACTTGTTGAAGCATTTGGTTATACTCTTGGTGGGTTTTTTCTTGCTAACTATGATGACAGTCCAGCAGGAACTTTTGATGAGCTTGTAGTAATTTCTGGAATTGTTTGGAACCGCCCAACCTCTTGCGCATGGGCAGCTAAGGTTCTAGTGAACAGTGCTGAAGCTTGTGATCATGGAAGAAAGGAAGTAGGGCTTCCAAGTCAAGTTGCTAGGTTTACAAAGAGGATTGAGGCAGTTCCAAAGCATCAGAGTGAGAAAGGACTTCTCAGCTTCTTACGTGGGAATAGTAATTTCCACAACCAAAAGAATCAGGAGCATGTCCAAGTGGCTGAAGTGAAGGGTCCTACTTCAATGGATGTCTGCAATATCAACCTTTCTTTTTCTGTTCCTTTCAGCAAATGGATGGGACCAGCTATCAAAATGTCTCTCCCAAGTTATAGTGGGCACACAGAATATACTCCTGAGCTACTCAAATATTCCTGTCAAATTCGATGCCGGGTGCGAGCTGTAAAGCCAGCAACTGTCTCGATTCCTGCATTAAACAGAGCAGAAGATGGAGACCACCATTCTCACATTACAAGAACTGGAGAATATGGGGAACATGAGCAAAGCCTTTGTACATCTGTACTATTGTCAAAACCTATACTAGCTTTAGAGTTTAGTTGCATGGAAATGCAAGTCCAAGCTCCCACTGTTGTTTCTCAATATTTTAAACACTCGCTAAGAACACCATGA ATGGAAATTGGAGACCAAAAATGTTCATCATCAGGCTATGGCAAACCTCCATGGATGTTCAGAGGAAGGGCCTTGTATCAACTCCATCTTGTTAAGGCTACAACTGCTCGAGCTTGTATTCCTAAGGAGTTGAGACTTGTTGAAGCATTTGGTTATACTCTTGGTGGGTTTTTTCTTGCTAACTATGATGACAGTCCAGCAGGAACTTTTGATGAGCTTGTAGTAATTTCTGGAATTGTTTGGAACCGCCCAACCTCTTGCGCATGGGCAGCTAAGGTTCTAGTGAACAGTGCTGAAGCTTGTGATCATGGAAGAAAGGAAGTAGGGCTTCCAAGTCAAGTTGCTAGGTTTACAAAGAGGATTGAGGCAGTTCCAAAGCATCAGAGTGAGAAAGGACTTCTCAGCTTCTTACGTGGGAATAGTAATTTCCACAACCAAAAGAATCAGGAGCATGTCCAAGTGGCTGAAGTGAAGGGTCCTACTTCAATGGATGTCTGCAATATCAACCTTTCTTTTTCTGTTCCTTTCAGCAAATGGATGGGACCAGCTATCAAAATGTCTCTCCCAAGTTATAGTGGGCACACAGAATATACTCCTGAGCTACTCAAATATTCCTGTCAAATTCGATGCCGGGTGCGAGCTGTAAAGCCAGCAACTGTCTCGATTCCTGCATTAAACAGAGCAGAAGATGGAGACCACCATTCTCACATTACAAGAACTGGAGAATATGGGGAACATGAGCAAAGCCTTTGTACATCTGTACTATTGTCAAAACCTATACTAGCTTTAGAGTTTAGTTGCATGGAAATGCAAGTCCAAGCTCCCACTGTTGTTTCTCAATATTTTAAACACTCGCTAAGAACACCATGA
BLAST of CSPI04G02440.1 vs. Swiss-Prot
Match: NDX1_ARATH (Protein NEOXANTHIN-DEFICIENT 1 OS=Arabidopsis thaliana GN=NDX1 PE=2 SV=1) HSP 1 Score: 326.6 bits (836), Expect = 2.7e-88 Identity = 165/277 (59.57%), Postives = 202/277 (72.92%), Query Frame = 1
BLAST of CSPI04G02440.1 vs. Swiss-Prot
Match: NDX1_SOLLC (Protein NEOXANTHIN-DEFICIENT 1 OS=Solanum lycopersicum GN=NXD1 PE=4 SV=1) HSP 1 Score: 325.5 bits (833), Expect = 6.0e-88 Identity = 170/289 (58.82%), Postives = 210/289 (72.66%), Query Frame = 1
BLAST of CSPI04G02440.1 vs. Swiss-Prot
Match: NDX1_ORYSJ (Protein NEOXANTHIN-DEFICIENT 1 OS=Oryza sativa subsp. japonica GN=NDX1 PE=3 SV=2) HSP 1 Score: 300.8 bits (769), Expect = 1.6e-80 Identity = 156/286 (54.55%), Postives = 196/286 (68.53%), Query Frame = 1
BLAST of CSPI04G02440.1 vs. TrEMBL
Match: A0A0A0KYQ3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G008790 PE=4 SV=1) HSP 1 Score: 548.9 bits (1413), Expect = 3.7e-153 Identity = 267/267 (100.00%), Postives = 267/267 (100.00%), Query Frame = 1
BLAST of CSPI04G02440.1 vs. TrEMBL
Match: D7TYT8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0244g00110 PE=4 SV=1) HSP 1 Score: 363.2 bits (931), Expect = 2.9e-97 Identity = 187/294 (63.61%), Postives = 222/294 (75.51%), Query Frame = 1
BLAST of CSPI04G02440.1 vs. TrEMBL
Match: M5Y540_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009508mg PE=4 SV=1) HSP 1 Score: 360.1 bits (923), Expect = 2.4e-96 Identity = 186/288 (64.58%), Postives = 214/288 (74.31%), Query Frame = 1
BLAST of CSPI04G02440.1 vs. TrEMBL
Match: A0A061E5R0_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_008385 PE=4 SV=1) HSP 1 Score: 358.2 bits (918), Expect = 9.3e-96 Identity = 187/293 (63.82%), Postives = 219/293 (74.74%), Query Frame = 1
BLAST of CSPI04G02440.1 vs. TrEMBL
Match: V4TFI8_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032244mg PE=4 SV=1) HSP 1 Score: 350.9 bits (899), Expect = 1.5e-93 Identity = 181/299 (60.54%), Postives = 225/299 (75.25%), Query Frame = 1
BLAST of CSPI04G02440.1 vs. TAIR10
Match: AT1G28100.4 (AT1G28100.4 unknown protein) HSP 1 Score: 319.3 bits (817), Expect = 2.4e-87 Identity = 165/285 (57.89%), Postives = 202/285 (70.88%), Query Frame = 1
BLAST of CSPI04G02440.1 vs. NCBI nr
Match: gi|449468896|ref|XP_004152157.1| (PREDICTED: uncharacterized protein LOC101204328 isoform X2 [Cucumis sativus]) HSP 1 Score: 599.7 bits (1545), Expect = 2.6e-168 Identity = 289/289 (100.00%), Postives = 289/289 (100.00%), Query Frame = 1
BLAST of CSPI04G02440.1 vs. NCBI nr
Match: gi|659108313|ref|XP_008454132.1| (PREDICTED: uncharacterized protein LOC103494625 [Cucumis melo]) HSP 1 Score: 565.1 bits (1455), Expect = 7.2e-158 Identity = 274/291 (94.16%), Postives = 280/291 (96.22%), Query Frame = 1
BLAST of CSPI04G02440.1 vs. NCBI nr
Match: gi|778689763|ref|XP_011653014.1| (PREDICTED: uncharacterized protein LOC101204328 isoform X1 [Cucumis sativus]) HSP 1 Score: 548.9 bits (1413), Expect = 5.3e-153 Identity = 267/267 (100.00%), Postives = 267/267 (100.00%), Query Frame = 1
BLAST of CSPI04G02440.1 vs. NCBI nr
Match: gi|645231389|ref|XP_008222374.1| (PREDICTED: uncharacterized protein LOC103322252 [Prunus mume]) HSP 1 Score: 365.9 bits (938), Expect = 6.4e-98 Identity = 188/294 (63.95%), Postives = 218/294 (74.15%), Query Frame = 1
BLAST of CSPI04G02440.1 vs. NCBI nr
Match: gi|296088173|emb|CBI35665.3| (unnamed protein product [Vitis vinifera]) HSP 1 Score: 363.2 bits (931), Expect = 4.1e-97 Identity = 187/294 (63.61%), Postives = 222/294 (75.51%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
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