CSPI03G23460.1 (mRNA) Wild cucumber (PI 183967)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CGTTTTGCTAGTAGAGACATTTGATCGAGAATTGACCAATGAGTAGCGTAGTATATGGTTGAAGAAGGCTCGAAGCAGAACCAAGCAACAAAAAATGGCGATGTTCTGTAAATTCATCTCAGATGACGTTTGAAACTCCTAGAAGGAAGGTATTCCTATTCAAAAATGGTGCAGATTCTTCTCCAATGCTCTTCTCCTCCTCCTCCGCCTCCTTCTCCTACTTCCTCCAGGTATCACCATTTTCCATTTCCTTATTCTTTCTCCATTAATCCCTACGCTTTCTTGTGTTGTGTAATTTTACTTCCATTTTTCTGGGTTCATTTCAATTTGTGATTAAACTCGTGATTCCTGCTGTAGTTTTCGGGTATTTGCGTTGGCATTAGGAAATTTCGTAACTAGGTTGTGCGTTGTTGGACTGTATATTCAAAATAGGATACATGGGTTTAATTCAAGGGTCTTTTCTTAGGTTCTGAAAAATGGAGAAATGAATTTGCATTTGAACTGAGGTTGCATTCAGTTGGGCGACCGAGTTCATGGATTGAAAATGGCTGTGTACTTGAGTTTGATGCAATTGATATCAGTGGTTGAATTGGACACACGGTGTTGAAAGTAGTAATCAATATAATAAACAACTACTTGTGATAGTGTCATAGATGAGATGACTAGACCTCAGTCCTCAATGTTTAGTGCTTCTTTGTTTATGTTTATTTCTATTCTCTCACAACTGTTGGTTCAAACTAACTGATGGTCCATTTTATCAGCCATTGGCTTTTTCTGCTTATTTTTTTCAAATTTTTTTGTCTTTTTTGTAATCAGGGGAATGCCTGGCAAAGTAATGTTGAAGAATGGTTTTGAGCAATCTTCTCTAAGAAAGCTTGTGTCCCAGCATGTACTCTCTGGATTTGCTGCTTCATTGATATTTCTCACTCAAACAAACCAGGTTAGTGAGTCTATTGATTACTGCAAGACGTTAATGTAAGAACATTTCTAAAGATAGCTAAGTAGTCAACTTCGAGTAGTATCCGATCCATTGTTGATCTGTTTGGTTTTGTGTGCATTTAACTTGCATAATGGCATCAGAATGCCGGCAATTTAGATTCCATTGAAAAGCTTGGATCCCATCATTTATTTGCAAATAATAGGTTCAAAGGCTCTAAGAAGCATATGATATGCTGTGTTATGCAATTAGCTCTCTGTTCATAACGTTACACTGAATGAATATAGAGTTTCTTCGCAAGATCCAATGGTATTTGGGATTCATTAATTCATGTCATAGGAGAGGACATATACAGGATTACGTGACAAACTTTATGAATACAAGCAGAGCTTCATGTCTTACACTAGTTTCTTGATCAGGCTATCTCAGTAGATATACCTCGCCGTGAAAACTTGTGTCAGCTTGCAAGTGCAGAGAATGCTGCAGGCCTTCCTTTTGTCAATGATTCTGATGGAGGGGGGAGGTTGATGATGATGAGAGGAATGACAGCCAAAAATTTTGATCCTGTTCGATACTCAGGAAGATGGTTCGAAGTTGCATCACTTAAACGTGGATTTGCTGGCCAAGGTCAGGAAGACTGCCACTGCACCCAGGTGAACCTGACTGGTTGGTGTAGCTTATAGTTTCTTTTGTCTCTTGGAATCTGGACGATTACTCCTTTAATCATATATTTCAAACAACAACCAACCAGTCTTACATGCCTTTTGTGTAATGGAGCGAAAAAATGGCCTGGGCAAACTTAATCATTTACTCTAATGATGTTAATTATTAATCATTTACAGTCCAACAGCCATATGACTAAGTTAAGTCAATGTAGTAATCATACTGACGAATAAGATATTCCACTGTACCAATATGTAGGGTGTTTACACATTTGATATGGCGACACCAGCAATACAAGTAGATACCTTTTGTGTTCATGGAAGCCCCGACGGATATATAACTGGGATAAGAGGAAGAGTTCAGTGTCTTGCAGAGGAAGATTTACAGAAAAACGCAACTGAGCTGGAGAAGCAGGAGATGATCAAGGAGAAATGTTACCTGCGTTTTCCTACATTGCCATTTATCCCTAAGGAGCCATATGATGTCATTGCAACTGATTATGACAACTTTGCTATAGTTTCTGGAGCTAAAGACCTTAGCTTTGTTCAGGTAAATTTAAAGATTCAGTGCATATTTTAGTTTGGTTTAAATACCATTTTGATCCTGGTGGCTGATGCTATAACTTGTGATTTTAAAACGTTCTGACAGCTATACGTATATACAAATGGACTAATTACTGATATTTAGTTTAGTTTTCAAACAATTTGCTCATTAAAAACGGCTTAGAACTCCAATTGTAGGATTTTTTTTTTGTTGCAAAATCTTTAACTACGATTTTAGAGATTGTTAAAGGAAAACATATAAATGAGATTTCTCTATTTTACTGTCCTTCTCTATTCTATTGATTGACATTCAAACTTGCAAAACGGAAGAAATATGTTTCAATTTATACTCCTAAACTTTAGAAATTGTATTAGTTTAAACCTTGAACTTTTGTAAGTTTATCAATGTAAACCCTCCACTAAGACGCCTTTGGAGAAACATCATGTGAAACTCTTAATTGTATTAATTAAACCTGTAAACATTCATAAATGAATCAATTTAGAATTTTCTTCGAGACTCGTCTATGCATTTACTCTATTGTCTAATTTGTTATATTGACTTTTGAAAATTAATGCATGGATGATTTTTAAAGATAGCTATGAAGGAGCCTAAATTGATTAACTTATGAATATTTTGGAGCATAATTGATTCAAATCTTAAGTCTCACGTGATATTATTAGAAACGTATTATTAAAAAGAAATCTAAGAGAAGGAGTAAACTGATACACTTACAAAAATTTTGTGGTTAAGTTGATATAATTGTTGGTTCTGAGTTTTAACGAATACAACCTTTAAAGGTTAGGGGTACAAATTGATATTTCCTTCTATTTTTTTCTTTTTTTCTTTTCTTAATAAGCAAGGTTTTATTAAGCCATACTTTTCTTTTAGATTTGACTGCATCTTCAATGGAAATGATACATATGGTTTGTTCTATGTCTGCAACGCGTGTAATGACTACACTAAAACTAGCAAACAGGAGAGTATGATTTGCAAACTATAAAGATGTTTGAGACCATTTTTAGCATACATTGGTGCAGATTACAGAAAGGTAAACAACATGTGTATTTGAACCCTGAATAAATTGGATTACTAGTCTTCATCCTGGGTTAGAATGGCATTTATTTTTTTAAGAGTTTTTAGCAGTTCGAACCCCATTAGGCTTGGAATCATCAAGTTCTATACTTCAAATGGATAAATGGACTCTCCTTTTACTGAAATTGTAGCTTTGGTGAATGATAAACTACAGAGCGGTCAACTTATAATAACTTGAACGCCATTGTCTCCCATCTGCATCCCTTCTGATTGATTATTTTGATCATAAAATATAACAGATATATTCAAGAACGCCAAACCCGGGACGCGATTTCATAGAGAAGTACAAATCATACTTGTCAAACTTCGGGTACGATCCAAGCAAAATCAAGGACACTCCTCAAGATTGTGAAGTAATGTCAAATAGTCAGCTAGCTGCAATGATGTCAATGAGTGGAATGCAACAAGCTTTGACAAATCAGTTTCCAGATTTAGGGCTAAAGGCTCCTATTGAACTCAACCCTTTCACAAGTGTATTTGATACTTTCAAAAAGCTACTAGAACTCTATTTCAAGTAGTAGTTCTGCTGTGCTATCCGTGTTGTTGAGCACGCTGGTTTAAACGCTAATTATTGCTTTATTTAAATTATCGATTATTTTCTCATTCTCAC ATGGTGCAGATTCTTCTCCAATGCTCTTCTCCTCCTCCTCCGCCTCCTTCTCCTACTTCCTCCAGGGGAATGCCTGGCAAAGTAATGTTGAAGAATGGTTTTGAGCAATCTTCTCTAAGAAAGCTTGTGTCCCAGCATGTACTCTCTGGATTTGCTGCTTCATTGATATTTCTCACTCAAACAAACCAGGCTATCTCAGTAGATATACCTCGCCGTGAAAACTTGTGTCAGCTTGCAAGTGCAGAGAATGCTGCAGGCCTTCCTTTTGTCAATGATTCTGATGGAGGGGGGAGGTTGATGATGATGAGAGGAATGACAGCCAAAAATTTTGATCCTGTTCGATACTCAGGAAGATGGTTCGAAGTTGCATCACTTAAACGTGGATTTGCTGGCCAAGGTCAGGAAGACTGCCACTGCACCCAGGGTGTTTACACATTTGATATGGCGACACCAGCAATACAAGTAGATACCTTTTGTGTTCATGGAAGCCCCGACGGATATATAACTGGGATAAGAGGAAGAGTTCAGTGTCTTGCAGAGGAAGATTTACAGAAAAACGCAACTGAGCTGGAGAAGCAGGAGATGATCAAGGAGAAATGTTACCTGCGTTTTCCTACATTGCCATTTATCCCTAAGGAGCCATATGATGTCATTGCAACTGATTATGACAACTTTGCTATAGTTTCTGGAGCTAAAGACCTTAGCTTTGTTCAGATATATTCAAGAACGCCAAACCCGGGACGCGATTTCATAGAGAAGTACAAATCATACTTGTCAAACTTCGGGTACGATCCAAGCAAAATCAAGGACACTCCTCAAGATTGTGAAGTAATGTCAAATAGTCAGCTAGCTGCAATGATGTCAATGAGTGGAATGCAACAAGCTTTGACAAATCAGTTTCCAGATTTAGGGCTAAAGGCTCCTATTGAACTCAACCCTTTCACAAGTGTATTTGATACTTTCAAAAAGCTACTAGAACTCTATTTCAAGTAG ATGGTGCAGATTCTTCTCCAATGCTCTTCTCCTCCTCCTCCGCCTCCTTCTCCTACTTCCTCCAGGGGAATGCCTGGCAAAGTAATGTTGAAGAATGGTTTTGAGCAATCTTCTCTAAGAAAGCTTGTGTCCCAGCATGTACTCTCTGGATTTGCTGCTTCATTGATATTTCTCACTCAAACAAACCAGGCTATCTCAGTAGATATACCTCGCCGTGAAAACTTGTGTCAGCTTGCAAGTGCAGAGAATGCTGCAGGCCTTCCTTTTGTCAATGATTCTGATGGAGGGGGGAGGTTGATGATGATGAGAGGAATGACAGCCAAAAATTTTGATCCTGTTCGATACTCAGGAAGATGGTTCGAAGTTGCATCACTTAAACGTGGATTTGCTGGCCAAGGTCAGGAAGACTGCCACTGCACCCAGGGTGTTTACACATTTGATATGGCGACACCAGCAATACAAGTAGATACCTTTTGTGTTCATGGAAGCCCCGACGGATATATAACTGGGATAAGAGGAAGAGTTCAGTGTCTTGCAGAGGAAGATTTACAGAAAAACGCAACTGAGCTGGAGAAGCAGGAGATGATCAAGGAGAAATGTTACCTGCGTTTTCCTACATTGCCATTTATCCCTAAGGAGCCATATGATGTCATTGCAACTGATTATGACAACTTTGCTATAGTTTCTGGAGCTAAAGACCTTAGCTTTGTTCAGATATATTCAAGAACGCCAAACCCGGGACGCGATTTCATAGAGAAGTACAAATCATACTTGTCAAACTTCGGGTACGATCCAAGCAAAATCAAGGACACTCCTCAAGATTGTGAAGTAATGTCAAATAGTCAGCTAGCTGCAATGATGTCAATGAGTGGAATGCAACAAGCTTTGACAAATCAGTTTCCAGATTTAGGGCTAAAGGCTCCTATTGAACTCAACCCTTTCACAAGTGTATTTGATACTTTCAAAAAGCTACTAGAACTCTATTTCAAGTAG
BLAST of CSPI03G23460.1 vs. Swiss-Prot
Match: CHL_ARATH (Chloroplastic lipocalin OS=Arabidopsis thaliana GN=CHL PE=1 SV=1) HSP 1 Score: 430.6 bits (1106), Expect = 1.5e-119 Identity = 216/309 (69.90%), Postives = 253/309 (81.88%), Query Frame = 1
BLAST of CSPI03G23460.1 vs. Swiss-Prot
Match: APOD_MOUSE (Apolipoprotein D OS=Mus musculus GN=Apod PE=1 SV=1) HSP 1 Score: 65.9 bits (159), Expect = 9.8e-10 Identity = 49/172 (28.49%), Postives = 72/172 (41.86%), Query Frame = 1
BLAST of CSPI03G23460.1 vs. Swiss-Prot
Match: APOD_HUMAN (Apolipoprotein D OS=Homo sapiens GN=APOD PE=1 SV=1) HSP 1 Score: 57.4 bits (137), Expect = 3.5e-07 Identity = 51/179 (28.49%), Postives = 80/179 (44.69%), Query Frame = 1
BLAST of CSPI03G23460.1 vs. TrEMBL
Match: A0A0A0LBK6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G426340 PE=3 SV=1) HSP 1 Score: 668.7 bits (1724), Expect = 3.7e-189 Identity = 329/330 (99.70%), Postives = 329/330 (99.70%), Query Frame = 1
BLAST of CSPI03G23460.1 vs. TrEMBL
Match: A0A061F6X3_THECC (Chloroplastic lipocalin OS=Theobroma cacao GN=TCM_030970 PE=4 SV=1) HSP 1 Score: 517.3 bits (1331), Expect = 1.4e-143 Identity = 250/325 (76.92%), Postives = 281/325 (86.46%), Query Frame = 1
BLAST of CSPI03G23460.1 vs. TrEMBL
Match: B9SAI0_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0586980 PE=4 SV=1) HSP 1 Score: 513.5 bits (1321), Expect = 2.0e-142 Identity = 256/328 (78.05%), Postives = 281/328 (85.67%), Query Frame = 1
BLAST of CSPI03G23460.1 vs. TrEMBL
Match: A0A067L4S0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00841 PE=4 SV=1) HSP 1 Score: 508.8 bits (1309), Expect = 4.9e-141 Identity = 255/329 (77.51%), Postives = 281/329 (85.41%), Query Frame = 1
BLAST of CSPI03G23460.1 vs. TrEMBL
Match: A0A0B0PFB3_GOSAR (Apolipoprotein D OS=Gossypium arboreum GN=F383_07264 PE=3 SV=1) HSP 1 Score: 508.4 bits (1308), Expect = 6.3e-141 Identity = 252/329 (76.60%), Postives = 282/329 (85.71%), Query Frame = 1
BLAST of CSPI03G23460.1 vs. TAIR10
Match: AT3G47860.1 (AT3G47860.1 chloroplastic lipocalin) HSP 1 Score: 430.6 bits (1106), Expect = 8.5e-121 Identity = 216/309 (69.90%), Postives = 253/309 (81.88%), Query Frame = 1
BLAST of CSPI03G23460.1 vs. NCBI nr
Match: gi|449468480|ref|XP_004151949.1| (PREDICTED: uncharacterized protein LOC101212269 [Cucumis sativus]) HSP 1 Score: 668.7 bits (1724), Expect = 5.3e-189 Identity = 329/330 (99.70%), Postives = 329/330 (99.70%), Query Frame = 1
BLAST of CSPI03G23460.1 vs. NCBI nr
Match: gi|659109045|ref|XP_008454519.1| (PREDICTED: uncharacterized protein LOC103494915 [Cucumis melo]) HSP 1 Score: 649.0 bits (1673), Expect = 4.3e-183 Identity = 320/330 (96.97%), Postives = 324/330 (98.18%), Query Frame = 1
BLAST of CSPI03G23460.1 vs. NCBI nr
Match: gi|590607205|ref|XP_007020937.1| (Chloroplastic lipocalin [Theobroma cacao]) HSP 1 Score: 517.3 bits (1331), Expect = 2.0e-143 Identity = 250/325 (76.92%), Postives = 281/325 (86.46%), Query Frame = 1
BLAST of CSPI03G23460.1 vs. NCBI nr
Match: gi|255563999|ref|XP_002522999.1| (PREDICTED: chloroplastic lipocalin isoform X1 [Ricinus communis]) HSP 1 Score: 513.5 bits (1321), Expect = 2.8e-142 Identity = 256/328 (78.05%), Postives = 281/328 (85.67%), Query Frame = 1
BLAST of CSPI03G23460.1 vs. NCBI nr
Match: gi|802588069|ref|XP_012070771.1| (PREDICTED: uncharacterized protein LOC105632914 [Jatropha curcas]) HSP 1 Score: 508.8 bits (1309), Expect = 7.0e-141 Identity = 255/329 (77.51%), Postives = 281/329 (85.41%), Query Frame = 1
The following BLAST results are available for this feature:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
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