CSPI02G19200.1 (mRNA) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI02G19200.1
Type	mRNA
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr2 : 17521477 .. 17521849 (-)
Sequence length	249

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GGATATACAATTGAAATTAGGATTATTGAATTTACATCACCCATGTGCAATTCCTCCATGTTTCCTATTCTTCTCCCTCCTTTATACCTGCCACCAAAATTCAGATCGGATCAAACCCTTATTCCCACTTGGGCCATAACAAAGCAGCAGCCCAGCAACTTTGGGACTTTAAGTGTACGACAATATTCTACAAAAATTTGATAAATATAATGAAATTTATTAGCGATAAACTACTATAACTAATATATTCTTATAGTCACGTGATATTCGCAATAATTTTCTATCCAACAATAAGTGGCCTACGAAAGTTGATGGTGATGAAAAACGGCTGATAAATGAGGACGAATGGCGCATGATCGCTTCCAACGGGTGA

mRNA sequence

ATGTGCAATTCCTCCATGTTTCCTATTCTTCTCCCTCCTTTATACCTGCCACCAAAATTCAGATCGGATCAAACCCTTATTCCCACTTGGGCCATAACAAAGCAGCAGCCCAGCAACTTTGGGACTTTAAGTTCACGTGATATTCGCAATAATTTTCTATCCAACAATAAGTGGCCTACGAAAGTTGATGGTGATGAAAAACGGCTGATAAATGAGGACGAATGGCGCATGATCGCTTCCAACGGGTGA

Coding sequence (CDS)

ATGTGCAATTCCTCCATGTTTCCTATTCTTCTCCCTCCTTTATACCTGCCACCAAAATTCAGATCGGATCAAACCCTTATTCCCACTTGGGCCATAACAAAGCAGCAGCCCAGCAACTTTGGGACTTTAAGTTCACGTGATATTCGCAATAATTTTCTATCCAACAATAAGTGGCCTACGAAAGTTGATGGTGATGAAAAACGGCTGATAAATGAGGACGAATGGCGCATGATCGCTTCCAACGGGTGA

Homology

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BLAST of CSPI02G19200.1 vs. TrEMBL
Match: A0A0A0LL96_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G358885 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 3.2e-41
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 1


Query: 1  MCNSSMFPILLPPLYLPPKFRSDQTLIPTWAITKQQPSNFGTLSSRDIRNNFLSNNKWPT 60
          MCNSSMFPILLPPLYLPPKFRSDQTLIPTWAITKQQPSNFGTLSSRDIRNNFLSNNKWPT
Sbjct: 1  MCNSSMFPILLPPLYLPPKFRSDQTLIPTWAITKQQPSNFGTLSSRDIRNNFLSNNKWPT 60

Query: 61 KVDGDEKRLINEDEWRMIASNG 83
          KVDGDEKRLINEDEWRMIASNG
Sbjct: 61 KVDGDEKRLINEDEWRMIASNG 82

[Close]

BLAST of CSPI02G19200.1 vs. NCBI nr
Match: gi|700207399|gb|KGN62518.1| (hypothetical protein Csa_2G358885 [Cucumis sativus])

HSP 1 Score: 175.3 bits (443), Expect = 4.6e-41
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 1


Query: 1  MCNSSMFPILLPPLYLPPKFRSDQTLIPTWAITKQQPSNFGTLSSRDIRNNFLSNNKWPT 60
          MCNSSMFPILLPPLYLPPKFRSDQTLIPTWAITKQQPSNFGTLSSRDIRNNFLSNNKWPT
Sbjct: 1  MCNSSMFPILLPPLYLPPKFRSDQTLIPTWAITKQQPSNFGTLSSRDIRNNFLSNNKWPT 60

Query: 61 KVDGDEKRLINEDEWRMIASNG 83
          KVDGDEKRLINEDEWRMIASNG
Sbjct: 61 KVDGDEKRLINEDEWRMIASNG 82

The following BLAST results are available for this feature:

BLAST of CSPI02G19200.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI02G19200.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LL96_CUCSA	3.2e-41	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G358885 PE=4 SV=1	[more]

BLAST of CSPI02G19200.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI02G19200.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700207399\|gb\|KGN62518.1\|	4.6e-41	100.00	hypothetical protein Csa_2G358885 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI02G19200	CSPI02G19200	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI02G19200.1	CSPI02G19200.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI02G19200.1.cds2	CSPI02G19200.1.cds2	CDS
CSPI02G19200.1.cds1	CSPI02G19200.1.cds1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI02G19200.1.utr5p1	CSPI02G19200.1.utr5p1	five_prime_UTR