CSPI02G08370.1 (mRNA) Wild cucumber (PI 183967)
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCCTGTGTTCAAGCCTCTTCCCCTGTTGTTTCCTCCCCATTTAATATTCATTTCAATTTCTTGGGCCTTCTTCATATTTTGAGCCACAAGTGAGGGAGAGTGTTAGATATAATATTAAATTTGTCTTCACCCACAAGCTTAAGCTTTTGGGTCAATTGGTGGTGATTTAAGAGTTTCCTTCTTCAAAACGCCAGTAGACAGGAATATGATGTGACCGAGAAGGGAGAGTTGTCAAAGGCCTCTCCCAACCCATCAAATACGTTTTATAATACAAGTGGTTTCATCAAATACGTTTTATAATATGGGTGTAAACCACTACTGCTACTAAGTAGTATTAGTAGTAAGATTGGGTTGATCCGCAAAATTGAGATACATGTAAAAAATAAAAAGTGCTTGCATCTCTGGAAGTAACCAAAGTAAATGTTTTTAGCTGAGGAAATTAGAATCTCAATGCAATCGTCTCAAGCTTGTGCTCTACTTAATGCAAAAATACCCAATTAAGCAACTATTAATTAGCATTTGCTTCCAAATTAAATCAAGTGTCAATTAATGGAAAATGTAACACACCCTAAATTAATTAAACACTTGCATTAAGTTCTAAGGATAAACTGCGATAATTTATTTATTGGTACCAACTAACCGATCAAATATTTGGCCCTAAATCTCTCAAGCCAACTATGTGATCACATTAACTTCGTGCATGCCACACCTATGAAATGATTCTTGCCTACATAACAATCGGTATTCAACCACTACAGATTATATGTGGGTTTTTAGCGATTAACACAAACAAGTGATTTAGGTTTCAATCCTAACCATTCACACTGCTAAAGATTTAAAATAAGAGCTACAGATACTTGGAAGATACAAAAATATTCATTAAGCACTGAATCCTCACAAAATTACGTGGGTTTATAAAAAATCCCTAATCTATACCATGAGCAACCTCGAATAAATACTGAGACGGAGTAGTCGAGGCTCGCCATCATCAAGCCAAGTTACAGAAGCAAATACAACCGCCTAAACTATGCTAAAACCAAAAGAAGGAAGAACAATATAGAGAAAGCCTCCAAAGCTTGGGTGAAACTCCTCTCCCTTTAACCCTAATCCAAAATGATTTATATATAAGACTGGCGAGAGCGCTGTGATCCTACTGGGAAAAAGCCCAACACATTTCAATGTAGAGCAATGCTGTTGTGCTAATCCCCAACAGTATCACGATGCTAGGACAGTGTGATGGCCACTGCTTTGCAGCGTCGACCCTAGCATCAATTATTTTGTGTGACACCTTATTTGTCATCATTAACATGAATCCTGTTTGCATTTTTTCAGTACTATGCAAATGGGGAAGCATGGCACCTTCCAGATGGAGCTTATGCAACCCTGGGTGTTTTGAAAGATGCTGGAGGTTAGTTCAAAGTTTTCCTTCATCTTCATCAAGGATAGATGCAGGATTTTTGTTCATAGTGTTTTTAATGCCATGGGTTTTTCTTGCACAGTTAGGTTGGCTGTTGTGTCCAATTTTGACACTCGGTTAAGGCAGCTGTTAAAGGATCTAAGTGTCTTAGATATGTAAGGATGTTTCGCTTTACAAATTCTGTCTGTTTTTGTGGCTTCATCTTTTCTTTATACTTGGCATATATATTCATCTCATGAGTGAATGAAAATACAAGTTTCTTCCTTTGTTAATGTTTGATGAATAGAATAGATAAGAATTTGATTTTTCAGGTTTGATGCTGTTATAATATCGGCAGAAGTTGGATATGAAAAACCAGATGGAGAAATATTTGAAGCTGCATTAGGTACATATTAATCTCACCTATATACGTTTTGAAGACCAACTTACCTTAGCTACTGAAACTTTAACAGAGACCCTCGTTGATAACCTTTTACTTTTTGTTTTAAATTAAGCTTATTTTCTCTCATTGAATTCTTAGTCAAAAACCAGAAATAAAGAAAAATAAGTTTCTTAAAACCACTCTTTTTTATTATTATCATTACTTATTTAGTTTTAAAAATTTAGTTTGGTTTTTAAAGATATTGTTAAAAGTAGATTACAAACCCAGAGCCTAATTGTTGTCAAATGGGACGTGAGTTAATTTATTCCCTATTTTCATGGATGAGATCTCTCCTCCTGTCCATAAAAACACTAGAATTATGCATGGACAAACGAGTCAAGTTGGAATTAAGGTATAGTTTCTTTTTGTAGAAGAATGAGATAGAGGATTGTTTGTTGTAGATCAACTTGGAGTGAGATCTGACAAAGCTGTGCATGTTGGAGATGACCAGAAGGCAGATAAGGAGGGAGCCAATGCCGTTGGAATAGATTGTTGGTAAAACCATTGTTTTTGTTTACGATCAATTTTCATCTGCCAAACTCAAGGAGACTCAAAATTTTTCTTTGCATAACAAAAAAAGATAAATAATAAATAATAATAATAATAATAATAAAAAGAAAAATGGTAATGAATGTGGATCAATTTGTATAAGCAGGCTATGGGGAAGCGATGTGATGACGTTTGACGACATTGAAAATCAAATCCTCGTTTGA ATGTCCTGTGTTCAAGCCTCTTCCCCTACTGGCGAGAGCGCTGTGATCCTACTGGGAAAAAGCCCAACACATTTCAATGTAGAGCAATGCTGTTGTGCTAATCCCCAACAGTATCACGATGCTAGGACATACTATGCAAATGGGGAAGCATGGCACCTTCCAGATGGAGCTTATGCAACCCTGGGTGTTTTGAAAGATGCTGGAGTTAGGTTGGCTGTTGTGTCCAATTTTGACACTCGGTTAAGGCAGCTGTTAAAGGATCTAAGTGTCTTAGATATGTTTGATGCTGTTATAATATCGGCAGAAGTTGGATATGAAAAACCAGATGGAGAAATATTTGAAGCTGCATTAGATCAACTTGGAGTGAGATCTGACAAAGCTGTGCATGTTGGAGATGACCAGAAGGCAGATAAGGAGGGAGCCAATGCCGTTGGAATAGATTGTTGGCTATGGGGAAGCGATGTGATGACGTTTGACGACATTGAAAATCAAATCCTCGTTTGA ATGTCCTGTGTTCAAGCCTCTTCCCCTACTGGCGAGAGCGCTGTGATCCTACTGGGAAAAAGCCCAACACATTTCAATGTAGAGCAATGCTGTTGTGCTAATCCCCAACAGTATCACGATGCTAGGACATACTATGCAAATGGGGAAGCATGGCACCTTCCAGATGGAGCTTATGCAACCCTGGGTGTTTTGAAAGATGCTGGAGTTAGGTTGGCTGTTGTGTCCAATTTTGACACTCGGTTAAGGCAGCTGTTAAAGGATCTAAGTGTCTTAGATATGTTTGATGCTGTTATAATATCGGCAGAAGTTGGATATGAAAAACCAGATGGAGAAATATTTGAAGCTGCATTAGATCAACTTGGAGTGAGATCTGACAAAGCTGTGCATGTTGGAGATGACCAGAAGGCAGATAAGGAGGGAGCCAATGCCGTTGGAATAGATTGTTGGCTATGGGGAAGCGATGTGATGACGTTTGACGACATTGAAAATCAAATCCTCGTTTGA
BLAST of CSPI02G08370.1 vs. Swiss-Prot
Match: HDHD3_BOVIN (Haloacid dehalogenase-like hydrolase domain-containing protein 3 OS=Bos taurus GN=HDHD3 PE=2 SV=1) HSP 1 Score: 80.1 bits (196), Expect = 2.5e-14 Identity = 41/106 (38.68%), Postives = 61/106 (57.55%), Query Frame = 1
BLAST of CSPI02G08370.1 vs. Swiss-Prot
Match: HDHD3_MOUSE (Haloacid dehalogenase-like hydrolase domain-containing protein 3 OS=Mus musculus GN=Hdhd3 PE=1 SV=1) HSP 1 Score: 79.0 bits (193), Expect = 5.7e-14 Identity = 46/115 (40.00%), Postives = 63/115 (54.78%), Query Frame = 1
BLAST of CSPI02G08370.1 vs. Swiss-Prot
Match: HDHD3_HUMAN (Haloacid dehalogenase-like hydrolase domain-containing protein 3 OS=Homo sapiens GN=HDHD3 PE=1 SV=1) HSP 1 Score: 77.4 bits (189), Expect = 1.6e-13 Identity = 42/100 (42.00%), Postives = 57/100 (57.00%), Query Frame = 1
BLAST of CSPI02G08370.1 vs. Swiss-Prot
Match: HDHD3_XENLA (Haloacid dehalogenase-like hydrolase domain-containing protein 3 OS=Xenopus laevis GN=hdhd3 PE=2 SV=1) HSP 1 Score: 69.3 bits (168), Expect = 4.5e-11 Identity = 43/115 (37.39%), Postives = 57/115 (49.57%), Query Frame = 1
BLAST of CSPI02G08370.1 vs. Swiss-Prot
Match: HDHD3_DANRE (Haloacid dehalogenase-like hydrolase domain-containing protein 3 OS=Danio rerio GN=hdhd3 PE=2 SV=1) HSP 1 Score: 63.2 bits (152), Expect = 3.2e-09 Identity = 37/113 (32.74%), Postives = 57/113 (50.44%), Query Frame = 1
BLAST of CSPI02G08370.1 vs. TrEMBL
Match: A0A0A0LN41_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G108640 PE=4 SV=1) HSP 1 Score: 252.3 bits (643), Expect = 4.2e-64 Identity = 123/128 (96.09%), Postives = 125/128 (97.66%), Query Frame = 1
BLAST of CSPI02G08370.1 vs. TrEMBL
Match: D7TNA0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0026g02250 PE=4 SV=1) HSP 1 Score: 212.6 bits (540), Expect = 3.7e-52 Identity = 99/136 (72.79%), Postives = 118/136 (86.76%), Query Frame = 1
BLAST of CSPI02G08370.1 vs. TrEMBL
Match: M4DT20_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1) HSP 1 Score: 209.5 bits (532), Expect = 3.1e-51 Identity = 94/136 (69.12%), Postives = 118/136 (86.76%), Query Frame = 1
BLAST of CSPI02G08370.1 vs. TrEMBL
Match: A0A0D3CA27_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1) HSP 1 Score: 206.5 bits (524), Expect = 2.6e-50 Identity = 91/136 (66.91%), Postives = 119/136 (87.50%), Query Frame = 1
BLAST of CSPI02G08370.1 vs. TrEMBL
Match: A0A078IGH7_BRANA (BnaA06g09100D protein OS=Brassica napus GN=BnaA06g09100D PE=4 SV=1) HSP 1 Score: 205.7 bits (522), Expect = 4.5e-50 Identity = 92/136 (67.65%), Postives = 117/136 (86.03%), Query Frame = 1
BLAST of CSPI02G08370.1 vs. TAIR10
Match: AT1G14310.1 (AT1G14310.1 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein) HSP 1 Score: 204.9 bits (520), Expect = 3.9e-53 Identity = 93/136 (68.38%), Postives = 115/136 (84.56%), Query Frame = 1
BLAST of CSPI02G08370.1 vs. TAIR10
Match: AT2G41250.1 (AT2G41250.1 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein) HSP 1 Score: 121.3 bits (303), Expect = 5.6e-28 Identity = 62/135 (45.93%), Postives = 85/135 (62.96%), Query Frame = 1
BLAST of CSPI02G08370.1 vs. NCBI nr
Match: gi|778668177|ref|XP_011649049.1| (PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein 3 isoform X1 [Cucumis sativus]) HSP 1 Score: 255.4 bits (651), Expect = 7.1e-65 Identity = 123/136 (90.44%), Postives = 129/136 (94.85%), Query Frame = 1
BLAST of CSPI02G08370.1 vs. NCBI nr
Match: gi|778668180|ref|XP_011649050.1| (PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein 3 isoform X2 [Cucumis sativus]) HSP 1 Score: 255.4 bits (651), Expect = 7.1e-65 Identity = 123/136 (90.44%), Postives = 129/136 (94.85%), Query Frame = 1
BLAST of CSPI02G08370.1 vs. NCBI nr
Match: gi|700206267|gb|KGN61386.1| (hypothetical protein Csa_2G108640 [Cucumis sativus]) HSP 1 Score: 252.3 bits (643), Expect = 6.0e-64 Identity = 123/128 (96.09%), Postives = 125/128 (97.66%), Query Frame = 1
BLAST of CSPI02G08370.1 vs. NCBI nr
Match: gi|659082160|ref|XP_008441699.1| (PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein 3 [Cucumis melo]) HSP 1 Score: 247.7 bits (631), Expect = 1.5e-62 Identity = 119/136 (87.50%), Postives = 127/136 (93.38%), Query Frame = 1
BLAST of CSPI02G08370.1 vs. NCBI nr
Match: gi|1009154278|ref|XP_015895083.1| (PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein 3 [Ziziphus jujuba]) HSP 1 Score: 213.0 bits (541), Expect = 4.0e-52 Identity = 98/136 (72.06%), Postives = 117/136 (86.03%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
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