CSPI02G03900.4 (mRNA) Wild cucumber (PI 183967)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AAGAGTCCGACCCATATCTGATTTCTTACGAACGTGTGTTGCTTTTTTTCTCAAACCCCATTTCTTGTGCTACACTCCAAATTCCAATGAAACCCATCAAACCCCAAAATTTTCCCATTCCACCCAATTCATTTTCATCTCAAAGTTTCCCCCCATTTTCCTGGGCAAACAGACAAAATTCATCTGTCCAACACCACTTCTACAATCAACCTCACTCACCCGTTTCCATGGAACCACCTTTAAATCCTTTCTTTCCATTTCCGTTTGATCTGAAAACACGATTCTCTATCCTTTTGTGCAAACCCCTTGTCAAGATTTGATCAGATAGCTCAGAATCCATCAATCTGTAAGCAAGTTTTTCTTACCCAACTTCAGAATCCAGATGGGTCTTTTCTGATTGTGATAATTAATATGTGAAGAGGGAGGAAAAAAAAAATGAAGCAATGTGATGATGATTCTTGTTGCTGTTTTTCTGTCTTCTGGATTTGAACTTTGAACCGCACTTTCGGTTGTATAATGATTTTCCCCACATTTTGATTTCGAATTTGGGGTCCCCAAAAGGTAAGAGATGATGATAATCCTGCAAATTAATACCAACGAAAAGGAAACTTTATAGCTTTATGTGATTTTCTTGGAATTTTTGGCCTGCCAACAAGTCATTATTGTTGTTGTTTGTTCAGCCTCTGCTCATAGCTTAAAATTTCCATTGATTGATCTGTGCTTTTCACTTTAGTATTCTGGTAGAATGGAATCTCTATGTTCTGTTTCTTTCTCTCTCTGTGCTGGATATACCTCAGTGAGTATTCGATACTTTTTTCCCCTATAAGGTTTCTTAGATGAATGCTCCAAATGCTAATACTTTTCCATTGTGATTTGAAAGCTTGAATAATTGTGCCCAAATGGACCCAAATGACATTAAATATTTGTCCTTGGTGACTATACATGAAAGGAAAGAATAAATATAGATTAAAGCTACTTTATTCATATTCCTCTCTAATATTCCCAAGAAATGAACCGAACCAGAATCGTGAGAAATTGCTGTCTACAGGCCAGAGTTATGAATAAGCTTGTTTTCAAACCAACTTTCTCTTTCTCTTCTTATTAAGAACTACCTAGCTTTTCTGCCTGACAAGTCAAGTATGCTCAAGCAATAAAGATTGAGAAGGTTATTGAAGAAGCTCTAAACTGTAAGCCCTTTTTACTGGTGCATTTCAGGCATTTTATGTCTTCTTTTCTTCCTATATTTCCCCAAAATTGCCTGCCTCATGGTCTGTGAGCCACTTTCGTATACCGTTATTGTCTGATTTTCGTTAAGATCACCCCCTCTTTGTTCTTTGAAGCACATGACCAGTTGCCTCCGGAATTTGATATCGTTCAAATAATTATAGGTAAGATTTAGCTTCTTTTTTCCATTTGAGTTTGAGGTAATTTCTGATGGAATGAATGTTCTCTTGTAAGCTATTACTTAAACTTTAGAGTTCAACGACCTAAAAAGATGAGATTTCTCATCAGATATTGTTAGAGTCATTTAAATTTCTAGTGACATTAACTGATCTGTGGGGTCTGCTGCACGTACCGGATTCAGAAATCTAATTAAACCTTTTACCCTTCTATTTTCTAAGAGACCTTTCCCCTTTTCTTCCCTTTCAAGTTATTGACGATGAGAATCAATTGGTGGCACCAAAGCATCTCATTTGTTTAGCTGCGAAACATCTAAAGAACCATGTTTTCTTATCTCTATGATTCAAATTTCTGAATAAGTTTTAAGGAATATATGCAGCTTTAGAAGTTGGCTTTTGAATCTGTTGGGGGAATAGTCTTTATACCTTGCAATAATGTTGGTTCTAGTATCAGATTAAGAAGGGACCCACTGGTATTATTAGATTGCTTCTTTACCATTCACTATGGATTATGTATGAATTAAGCTATTAAAGTAAATAAGATTTGTGTATGTGCAGGTCTAGATAAACATGAGAGAAATGGCAAATAATGGTATGGATTTTCAAGTAGAAACAGATTCACTTCTTGGACTGAGTGAATCTGGAAAACTTATTTCGAGTTCTCCACAAGTTTTGTCAATTCTTTCCTCTGTTTTCGAGAAGTTGATTCAGAAAAATGAAAAGCTATTGAAAAGACTCAAAAAGAAAGACAGTGTTACAATTTTCCACAGTTCCCGAGCTCCTACCATGGGCATTGGACAATATATCGATCGCATCTTGAAGTACACGTGTTGTGGAACTGCTTGCTTAGTTGTTGCCTACATATACATTGAAAGGTATCTTCAAAAAACGGATGTTTACCTAACTTCTTTGAATGTCCACCGCCTTCTGATCACCAGCATCATGGTTGCAGCAAAGTTTATCGATGCCGGGTAAGTTCTACTGTTGCTTAGTTAGTTGTAATTCATTTAAGATGAAAAGATTTTGAGCTTGGTTAATATTCTGCAGTTTAGTTTCTTTATAGTTCACATCACACTCACTTTACTTCAGTTGGCTTCCCCTTCATTCGTTGAACTGAGATCATGGGAGGAGGAATCCTTAAGTTCAAGTTTTTATAGATGACCTTTTTTTAGTGAAGAAAGATGAATATATGATTCAGTCCCTCATGTTTGCTTCATTTTTCAAAATTTGTCCACAATCATTTAAAGGTTTATGGTTATCTACTTTATTACCAAGCCTTTATTGTCACAAAAATGTTAAAATTTATTGATGAAAATATTTTATTGTACTCGCGTTGGATCCCCCACCCTACATATGTATATTAGAGAAAGACGCCCACCCACATCACACACATATACATTATTCTTCTATTAAAGTTCAATGATGCTAAGGACTTAATTATAGTCAAGATATGAAAGATAGATATGAAAATTTTAAACGATTTTTATACAAAATGTAATAGTGATTCAAACACTGGTTTGAAAGATATCAATAGCTAGTGAGTTGTTTGTTCGATGCTGCTATACAGATACTGTGCATCTCATCAGTCATATTCTGAGATCTCTGAAAACTTCCTTCCAATTTCTTGGATGTTATAACAATACTTTTTATGTATACAATTACACAACTTAATGTGTTATGATTCTATGCAGGTGCTATAACAATACTTTTTATGCCAAAGTAGGAGGAGTGAGTACAAAAGAAATGAACAGCTTGGAGATAGAATTTCTGTTCAATTTGGACTTCAGACTTCATGTCACTGCTGACGTTTTCAGTACTCATTGTTTGCAGCTCCAAAAGGAAGTTCTTGGGGCAGAGAATCAAGTCGAACGTCGACCCGGTAACAAAGCTCGAACTAAATGTTTGCCTCAAATTACAGGCTATACTTGCAGTGCCATTTAAACACTCCCAAGGAAATCTCCCTTTCTTGAATTTCATGGTTAGTTTAGTGTTTCAAAATCTGGAGTTGTATGGAATATTATATTTTATAAAGCTTCAATTCTTAGACTAAATCCAGAAAGTAAAAAGATTGTAGCAGGAAGAGGATGGGATTGTAGAGATTCAATGAAAAATGTTTCCAATGCATTGGAAATTTTTTATAATTCAATCATGATTGTTAGATGGATTCTTCAAACTTTTACTTTTTTATTTTAAATTTTTTTTAACCGCTTCCGACCTATATTCAACTAAAAAACCTAAAAATTTAATCTCTTAATTTTAGGGTTGAATGAGTACTTTCTACAATTCAATAGAACTTTTATGAGTTGTTTTTAGTATAATTTATCAAATTTTAGAAACCATGGAATGAATATTTGATAGGGATGAGCATGATAAACTGAAATACCAAGTCTCGAAAAACAAGAAAGGTTGGTTAGGGTCATTTTCGAAAAGTTTTAAATCAAGAATTTTTAAAAAGTATTTCTAAGTGTTAAACCTACTTGGCTCAACAAAAATTCATTGATGTCAAGGTTGATTTGAACATTTACTAAACCAACTATGATTGGTTTGGTGGCAGTTTTGTCATAACTCACTACAACAAGTAGGGTCGTTCCTAACGTAGCACCACGTCGGCAAAAATCCCAAAAGGGCCGTTCCTAACGTAGCACCACGTCGGCAAAAACCCCAAAAGGGTCGTTCCTAACGTAGCCCCATGTCGGCAAAAACCCCAAAACACGTTGGGGAAGGTTACCCCGACGTCTCAGTCGACGTCGACATGAACGTCGGGGAAAGCACGTCGGGGATACTTTCTATCCCCGACGCAGATTGCGTCGACGAAGGGGAAACGTTCACCGACGCATAGTGTCAGCACGTCGGGGAAGGGTTTTCGCGACGTGACGTCGCTCTTCTTCTTCTAGCTTGTTATGTTCTGTTTCAATTGCATACTTACTATTATTCTTGTAGTTTTTTCGTGCGTTTCTTTTTTAACTTTGTGTTTCAGTGCAGATTCATTAACACATTTTACGGTGCTCTGGATTCTTGCGCTGCTAGAATTTGAAAGGGTACATTGAAGCGAAAAAGTTGAAATGGAAAAGCAAAAAGAGAAGAAAAGAGAACACTTCCGGCGGTGGTGGCGACAAAGACGGATGGCGACAGCAACACAACTCTCCTCCTCTCCCTCTCTCTCGACTGATTTTGAGTTTATTTTCGTTTTGCATTTTGTTCTGTGTTGATGGGAGAATAAATAGTGTGGACTTTTTCCAACGTCTCGAAAGGTACCTTTCGCCAACGTATGTAGTACACACGTCTGAAAAGTTTTAAATAATAAATTCATTATTTAAACTTTCCCCGACGTGCCTTCTGCCACACGTTGGGGAAAGGTGACCATGGTCACTTCAATACGGACACTTTCAGCTACGTGTGGCAGGTTGCACGTCAGAGAAAGTTTAAACAATAATT ATGAGAGAAATGGCAAATAATGGTATGGATTTTCAAGTAGAAACAGATTCACTTCTTGGACTGAGTGAATCTGGAAAACTTATTTCGAGTTCTCCACAAGTTTTGTCAATTCTTTCCTCTGTTTTCGAGAAGTTGATTCAGAAAAATGAAAAGCTATTGAAAAGACTCAAAAAGAAAGACAGTGTTACAATTTTCCACAGTTCCCGAGCTCCTACCATGGGCATTGGACAATATATCGATCGCATCTTGAAGTACACGTGTTGTGGAACTGCTTGCTTAGTTGTTGCCTACATATACATTGAAAGGTATCTTCAAAAAACGGATGTTTACCTAACTTCTTTGAATGTCCACCGCCTTCTGATCACCAGCATCATGGTTGCAGCAAAGTTTATCGATGCCGGGTGCTATAACAATACTTTTTATGCCAAAGTAGGAGGAGTGAGTACAAAAGAAATGAACAGCTTGGAGATAGAATTTCTGTTCAATTTGGACTTCAGACTTCATGTCACTGCTGACGTTTTCAGTACTCATTGTTTGCAGCTCCAAAAGGAAGTTCTTGGGGCAGAGAATCAAGTCGAACGTCGACCCGGTAACAAAGCTCGAACTAAATGTTTGCCTCAAATTACAGGCTATACTTGCAGTGCCATTTAA ATGAGAGAAATGGCAAATAATGGTATGGATTTTCAAGTAGAAACAGATTCACTTCTTGGACTGAGTGAATCTGGAAAACTTATTTCGAGTTCTCCACAAGTTTTGTCAATTCTTTCCTCTGTTTTCGAGAAGTTGATTCAGAAAAATGAAAAGCTATTGAAAAGACTCAAAAAGAAAGACAGTGTTACAATTTTCCACAGTTCCCGAGCTCCTACCATGGGCATTGGACAATATATCGATCGCATCTTGAAGTACACGTGTTGTGGAACTGCTTGCTTAGTTGTTGCCTACATATACATTGAAAGGTATCTTCAAAAAACGGATGTTTACCTAACTTCTTTGAATGTCCACCGCCTTCTGATCACCAGCATCATGGTTGCAGCAAAGTTTATCGATGCCGGGTGCTATAACAATACTTTTTATGCCAAAGTAGGAGGAGTGAGTACAAAAGAAATGAACAGCTTGGAGATAGAATTTCTGTTCAATTTGGACTTCAGACTTCATGTCACTGCTGACGTTTTCAGTACTCATTGTTTGCAGCTCCAAAAGGAAGTTCTTGGGGCAGAGAATCAAGTCGAACGTCGACCCGGTAACAAAGCTCGAACTAAATGTTTGCCTCAAATTACAGGCTATACTTGCAGTGCCATTTAA
BLAST of CSPI02G03900.4 vs. Swiss-Prot
Match: CCP31_ORYSJ (Cyclin-P3-1 OS=Oryza sativa subsp. japonica GN=CYCP3-1 PE=3 SV=1) HSP 1 Score: 181.8 bits (460), Expect = 8.0e-45 Identity = 92/168 (54.76%), Postives = 123/168 (73.21%), Query Frame = 1
BLAST of CSPI02G03900.4 vs. Swiss-Prot
Match: CCU31_ARATH (Cyclin-U3-1 OS=Arabidopsis thaliana GN=CYCU3-1 PE=1 SV=2) HSP 1 Score: 161.8 bits (408), Expect = 8.6e-39 Identity = 83/168 (49.40%), Postives = 112/168 (66.67%), Query Frame = 1
BLAST of CSPI02G03900.4 vs. Swiss-Prot
Match: CCU11_ARATH (Cyclin-U1-1 OS=Arabidopsis thaliana GN=CYCU1-1 PE=1 SV=1) HSP 1 Score: 151.4 bits (381), Expect = 1.2e-35 Identity = 82/174 (47.13%), Postives = 118/174 (67.82%), Query Frame = 1
BLAST of CSPI02G03900.4 vs. Swiss-Prot
Match: CCU42_ARATH (Cyclin-U4-2 OS=Arabidopsis thaliana GN=CYCU4-2 PE=1 SV=1) HSP 1 Score: 147.9 bits (372), Expect = 1.3e-34 Identity = 66/156 (42.31%), Postives = 113/156 (72.44%), Query Frame = 1
BLAST of CSPI02G03900.4 vs. Swiss-Prot
Match: CCU41_ARATH (Cyclin-U4-1 OS=Arabidopsis thaliana GN=CYCU4-1 PE=1 SV=1) HSP 1 Score: 145.6 bits (366), Expect = 6.4e-34 Identity = 71/154 (46.10%), Postives = 106/154 (68.83%), Query Frame = 1
BLAST of CSPI02G03900.4 vs. TrEMBL
Match: A0A0A0LJL5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G021730 PE=4 SV=1) HSP 1 Score: 425.2 bits (1092), Expect = 4.6e-116 Identity = 216/216 (100.00%), Postives = 216/216 (100.00%), Query Frame = 1
BLAST of CSPI02G03900.4 vs. TrEMBL
Match: A6YTD1_CUCME (Cyclin-dependent kinase OS=Cucumis melo subsp. melo PE=4 SV=1) HSP 1 Score: 412.1 bits (1058), Expect = 4.1e-112 Identity = 208/216 (96.30%), Postives = 211/216 (97.69%), Query Frame = 1
BLAST of CSPI02G03900.4 vs. TrEMBL
Match: B9RF55_RICCO (Cyclin-dependent protein kinase, putative OS=Ricinus communis GN=RCOM_1431440 PE=4 SV=1) HSP 1 Score: 219.5 bits (558), Expect = 3.9e-54 Identity = 109/181 (60.22%), Postives = 143/181 (79.01%), Query Frame = 1
BLAST of CSPI02G03900.4 vs. TrEMBL
Match: U5FQW8_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s02390g PE=4 SV=1) HSP 1 Score: 218.0 bits (554), Expect = 1.1e-53 Identity = 107/177 (60.45%), Postives = 140/177 (79.10%), Query Frame = 1
BLAST of CSPI02G03900.4 vs. TrEMBL
Match: F6HQ58_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0104g00540 PE=4 SV=1) HSP 1 Score: 214.2 bits (544), Expect = 1.6e-52 Identity = 107/176 (60.80%), Postives = 138/176 (78.41%), Query Frame = 1
BLAST of CSPI02G03900.4 vs. TAIR10
Match: AT3G05327.1 (AT3G05327.1 Cyclin family protein) HSP 1 Score: 173.7 bits (439), Expect = 1.2e-43 Identity = 86/169 (50.89%), Postives = 121/169 (71.60%), Query Frame = 1
BLAST of CSPI02G03900.4 vs. TAIR10
Match: AT3G63120.1 (AT3G63120.1 cyclin p1;1) HSP 1 Score: 161.8 bits (408), Expect = 4.8e-40 Identity = 83/168 (49.40%), Postives = 112/168 (66.67%), Query Frame = 1
BLAST of CSPI02G03900.4 vs. TAIR10
Match: AT3G21870.1 (AT3G21870.1 cyclin p2;1) HSP 1 Score: 151.4 bits (381), Expect = 6.5e-37 Identity = 82/174 (47.13%), Postives = 118/174 (67.82%), Query Frame = 1
BLAST of CSPI02G03900.4 vs. TAIR10
Match: AT5G07450.1 (AT5G07450.1 cyclin p4;3) HSP 1 Score: 147.9 bits (372), Expect = 7.2e-36 Identity = 66/156 (42.31%), Postives = 113/156 (72.44%), Query Frame = 1
BLAST of CSPI02G03900.4 vs. TAIR10
Match: AT2G44740.1 (AT2G44740.1 cyclin p4;1) HSP 1 Score: 145.6 bits (366), Expect = 3.6e-35 Identity = 71/154 (46.10%), Postives = 106/154 (68.83%), Query Frame = 1
BLAST of CSPI02G03900.4 vs. NCBI nr
Match: gi|449442823|ref|XP_004139180.1| (PREDICTED: cyclin-P3-1 [Cucumis sativus]) HSP 1 Score: 425.2 bits (1092), Expect = 6.6e-116 Identity = 216/216 (100.00%), Postives = 216/216 (100.00%), Query Frame = 1
BLAST of CSPI02G03900.4 vs. NCBI nr
Match: gi|659070359|ref|XP_008454704.1| (PREDICTED: cyclin-P3-1 [Cucumis melo]) HSP 1 Score: 412.1 bits (1058), Expect = 5.8e-112 Identity = 208/216 (96.30%), Postives = 211/216 (97.69%), Query Frame = 1
BLAST of CSPI02G03900.4 vs. NCBI nr
Match: gi|720000238|ref|XP_010255964.1| (PREDICTED: cyclin-P3-1-like isoform X2 [Nelumbo nucifera]) HSP 1 Score: 223.8 bits (569), Expect = 2.9e-55 Identity = 107/169 (63.31%), Postives = 138/169 (81.66%), Query Frame = 1
BLAST of CSPI02G03900.4 vs. NCBI nr
Match: gi|720000235|ref|XP_010255963.1| (PREDICTED: cyclin-P3-1-like isoform X1 [Nelumbo nucifera]) HSP 1 Score: 223.8 bits (569), Expect = 2.9e-55 Identity = 107/169 (63.31%), Postives = 138/169 (81.66%), Query Frame = 1
BLAST of CSPI02G03900.4 vs. NCBI nr
Match: gi|743829719|ref|XP_011023596.1| (PREDICTED: cyclin-P3-1-like [Populus euphratica]) HSP 1 Score: 221.1 bits (562), Expect = 1.9e-54 Identity = 110/177 (62.15%), Postives = 142/177 (80.23%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
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