CSPI04G27580 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI04G27580
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr4 : 24190133 .. 24190549 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTAAAACTCGAACATCATTTCCTCACCAATCTCTCTTCGATTTCTGTAGCTTCAAGACAAAGTATACAGAAGAAATACAATCCACAAACAACGCAGTGTAGAAAACAAAGCAATCCTAGTGAATCGTGACGTCTTATAGAATAGAAGACAAAGACGAGGAGCCAGAGAGAAAAATCTCGAAGCAAGCAGCCTTAGGATCTAGCGCAAATAAGGAAAAATGCAAAAGTAAAAGCAAACAACCTGAGTCCGGAAAGCAGATTTGGCAGCAGCGTTTCACGGCGGAGCCGGAACAGCATCTCTCAGGAAACTCAACCTCAAAAGCTAGTTCACCGGAAGCTCCAGCGAACCCTAAGCGAAGAAATGCAGTAGCATTAGAGAGGTTCAGGAGAGTGAAAATGGCGGAAGGATTTTAG

mRNA sequence

ATGTCTAAAACTCGAACATCATTTCCTCACCAATCTCTCTTCGATTTCTGTAGCTTCAAGACAAAGTATACAGAAGAAATACAATCCACAAACAACGCAGTAATAGAAGACAAAGACGAGGAGCCAGAGAGAAAAATCTCGAAGCAAGCAGCCTTAGGATCTAGCGCAAATAAGGAAAAATGCAAAAGTAAAAGCAAACAACCTGAGTCCGGAAAGCAGATTTGGCAGCAGCGTTTCACGGCGGAGCCGGAACAGCATCTCTCAGGAAACTCAACCTCAAAAGCTAGTTCACCGGAAGCTCCAGCGAACCCTAAGCGAAGAAATGCAGTAGCATTAGAGAGGTTCAGGAGAGTGAAAATGGCGGAAGGATTTTAG

Coding sequence (CDS)

ATGTCTAAAACTCGAACATCATTTCCTCACCAATCTCTCTTCGATTTCTGTAGCTTCAAGACAAAGTATACAGAAGAAATACAATCCACAAACAACGCAGTAATAGAAGACAAAGACGAGGAGCCAGAGAGAAAAATCTCGAAGCAAGCAGCCTTAGGATCTAGCGCAAATAAGGAAAAATGCAAAAGTAAAAGCAAACAACCTGAGTCCGGAAAGCAGATTTGGCAGCAGCGTTTCACGGCGGAGCCGGAACAGCATCTCTCAGGAAACTCAACCTCAAAAGCTAGTTCACCGGAAGCTCCAGCGAACCCTAAGCGAAGAAATGCAGTAGCATTAGAGAGGTTCAGGAGAGTGAAAATGGCGGAAGGATTTTAG

Homology

[Close]

BLAST of CSPI04G27580 vs. TrEMBL
Match: A0A0A0L4R0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G669190 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 9.7e-42
Identity = 99/122 (81.15%), Postives = 102/122 (83.61%), Query Frame = 1


Query: 1   MSKTRTSFPHQSLFDFCSFKTKYTEEIQSTNNAVIEDKDEEPERKISKQAALGSSANKEK 60
           MSKTRTSFPHQSLFDFCSFKTK            IEDKDEEPERKISKQAALGSSANK K
Sbjct: 1   MSKTRTSFPHQSLFDFCSFKTK------------IEDKDEEPERKISKQAALGSSANKAK 60

Query: 61  CKSKSKQPESGKQIWQQRFTAEPEQHLSGNSTSKASSPEAPANPKRRNAVALERFRRVKM 120
           CKSKSKQPES KQIWQQRFTAEPEQHLSGNSTSKASSPEAPANPKRRNA ++E  R+ K 
Sbjct: 61  CKSKSKQPESRKQIWQQRFTAEPEQHLSGNSTSKASSPEAPANPKRRNAESVEEKRKKKE 110

Query: 121 AE 123
            E
Sbjct: 121 EE 110

[Close]

BLAST of CSPI04G27580 vs. NCBI nr
Match: gi|700200409|gb|KGN55567.1| (hypothetical protein Csa_4G669190 [Cucumis sativus])

HSP 1 Score: 177.6 bits (449), Expect = 1.4e-41
Identity = 99/122 (81.15%), Postives = 102/122 (83.61%), Query Frame = 1


Query: 1   MSKTRTSFPHQSLFDFCSFKTKYTEEIQSTNNAVIEDKDEEPERKISKQAALGSSANKEK 60
           MSKTRTSFPHQSLFDFCSFKTK            IEDKDEEPERKISKQAALGSSANK K
Sbjct: 1   MSKTRTSFPHQSLFDFCSFKTK------------IEDKDEEPERKISKQAALGSSANKAK 60

Query: 61  CKSKSKQPESGKQIWQQRFTAEPEQHLSGNSTSKASSPEAPANPKRRNAVALERFRRVKM 120
           CKSKSKQPES KQIWQQRFTAEPEQHLSGNSTSKASSPEAPANPKRRNA ++E  R+ K 
Sbjct: 61  CKSKSKQPESRKQIWQQRFTAEPEQHLSGNSTSKASSPEAPANPKRRNAESVEEKRKKKE 110

Query: 121 AE 123
            E
Sbjct: 121 EE 110

The following BLAST results are available for this feature:

BLAST of CSPI04G27580 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI04G27580 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L4R0_CUCSA	9.7e-42	81.15	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G669190 PE=4 SV=1	[more]

BLAST of CSPI04G27580 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI04G27580 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700200409\|gb\|KGN55567.1\|	1.4e-41	81.15	hypothetical protein Csa_4G669190 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G27580.1	CSPI04G27580.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI04G27580	Csa4G669190	Cucumber (Chinese Long) v2	cpicuB181
CSPI04G27580	CsaV3_4G037880	Cucumber (Chinese Long) v3	cpicucB212

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI04G27580	Melon (DHL92) v3.5.1	cpimeB319
CSPI04G27580	Watermelon (97103) v1	cpiwmB359
CSPI04G27580	Bottle gourd (USVL1VR-Ls)	cpilsiB289
CSPI04G27580	Melon (DHL92) v3.6.1	cpimedB311
CSPI04G27580	Cucumber (Gy14) v2	cgybcpiB169
CSPI04G27580	Watermelon (97103) v2	cpiwmbB288
CSPI04G27580	Wax gourd	cpiwgoB418
CSPI04G27580	Cucumber (Gy14) v1	cgycpiB302
CSPI04G27580	Cucurbita maxima (Rimu)	cmacpiB482