CSPI04G08450 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI04G08450
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	GTP pyrophosphokinase
Location	Chr4 : 6201855 .. 6203510 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTCGTCATCTTATTAATTTAAAGTTCACACTGCAGGCCGTTGACACAGTTGTGGCTGGAATTCTCCATGACATAGTTGATGATACATGTCAAAAGTTGCACAGCATAGAAGAAGAATTTGGTGATGAAGTAGCCAAGTTGGTGGCTGGTGTCTCTAGGTTAAGTTACATAAACCAGGTATTATTAAAAAAATATATTTAGATTAAAACCCATCATTAAATCTCTTATCCCTCCCCCATGGAAAAAAACCATTATTAAAGTTAGGTTATGCTTTTGAATATTAAGAGCATGGTGTTTTTTGTTTGTGGTATTTCTCATGAGTGGGGATCTTAAATATTAGAAGGTAAGAACTTAAGATATCCTGGATGTGTGATAAGTTGAAGCCACTAAGAATATGATAAGCGTATAAAGTTTTTAAATTTATAGGAGTACAACCTGGACGACCTTTATCTTGGCTTTTCTATTCTTCTTCATGGTTTCTTTTACCCTGTCATAATATTGTTTTGATATTACATCTGTGTCATGCCTCAATTTTCCCCCATAAATTGTGATATTCTTAATGCTCCTTTTGGAATATAGTCATCAATATCAATTTATACAATTGTAATCACAGTGTAGTGAAAGACCCACTGCTCTCTACACCTATCTTAGTGAGGCTGCTTGAGACATGTGCCTCAGCGCATGTGCTGCACTGCTCCTAGAGCCCCAAGCCTTCTATTTATTTATAATTTTTCTAATTATTAAGGAATAAATGCATGAAACTTTTTAAAGCAGAAAATATGGTTGGTAAACTTTTTTTGAAAAGGAAACAAGCTTCAATATTATTAATAAACACAAAGTACAAGAGAGTTATACATTGAGAATGACAGAGAAGCCTAGAAATAGGGAAGAGAGAGAGGATCAGTAGGTGCACCTGGACATCTCAACTAGATTGACACCCCCTTAGCACTAAACTAAGAAAGAATATACTTTAACCTGCACTGACCATTGATGATGTGGTCTCCCTCTTTTCACCCTAAAGCAAGAAGATACCTTTGTTTGAATGTTAAAGGTGTCTTTTCTCATACCTTTGATATTTCTACACACACTGAAGATTTATGTCTAAGAATGATGGTTCTGACTGTCTTGGCATTGTGGCAGGAACCAGAAAGTATCCTCCCCCTAATAGAAACAGTGCCAGTGAATGAACATTTCTGATCAATATGGGTCTTCAATTGCGTCTCTCAGAGTCTTGAACCCCAAACTCTTCTAGAACTAATTTTCTCCGTTTCATGGCCTCTTTCCTTTCTCCAATTTCTTCAAGCTGAGAAACACCTTGGGCTGCTTCAGAAAACCCTTCTCCATCTGTTTTGCCATGATTAGGGATTTGAAGACCGATAGAAGCGACCTTAGAGTCTGATACAAAGGAAAAACTCTAGAGGCAGCAGAGGAATAAATGCATGAATGTTGTTTACATTTTCTCTATTGCGCTCTTCACTGAAAGAGCTTGTGTTTTTCATTTGTTTGTTCTTTAGGCCATGGAGGGCTGGTGCGTTAGTGCACCTCTAGTTTTAAACAACACTATGTAACCATATTATATACTTTCTGCAGTTGCTGCGCAGACATCGCCGAGTTAACTTGAACCCAGGTTCCTTAGGGCATGAAGAGGTATTG

mRNA sequence

ATGTCTCGTCATCTTATTAATTTAAAGTTCACACTGCAGGCCGTTGACACAGTTGTGGCTGGAATTCTCCATGACATAGTTGATGATACATGTCAAAAGTTGCACAGCATAGAAGAAGAATTTGGTGATGAAGTAGCCAAGTTGGTGGCTGGTGTCTCTAGGTTAAGTTACATAAACCAGTTGCTGCGCAGACATCGCCGAGTTAACTTGAACCCAGGTTCCTTAGGGCATGAAGAGGTATTG

Coding sequence (CDS)

ATGTCTCGTCATCTTATTAATTTAAAGTTCACACTGCAGGCCGTTGACACAGTTGTGGCTGGAATTCTCCATGACATAGTTGATGATACATGTCAAAAGTTGCACAGCATAGAAGAAGAATTTGGTGATGAAGTAGCCAAGTTGGTGGCTGGTGTCTCTAGGTTAAGTTACATAAACCAGTTGCTGCGCAGACATCGCCGAGTTAACTTGAACCCAGGTTCCTTAGGGCATGAAGAGGTATTG

Homology

[Close]

BLAST of CSPI04G08450 vs. TrEMBL
Match: A0A0A0KVK1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G092450 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 1.8e-36
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 1


Query: 1  MSRHLINLKFTLQAVDTVVAGILHDIVDDTCQKLHSIEEEFGDEVAKLVAGVSRLSYINQ 60
          MSRHLINLKFTLQAVDTVVAGILHDIVDDTCQKLHSIEEEFGDEVAKLVAGVSRLSYINQ
Sbjct: 1  MSRHLINLKFTLQAVDTVVAGILHDIVDDTCQKLHSIEEEFGDEVAKLVAGVSRLSYINQ 60

Query: 61 LLRRHRRVNLNPGSLGHEE 80
          LLRRHRRVNLNPGSLGHEE
Sbjct: 61 LLRRHRRVNLNPGSLGHEE 79

[Close]

BLAST of CSPI04G08450 vs. TrEMBL
Match: D7T7R8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0039g02260 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 2.4e-25
Identity = 56/67 (83.58%), Postives = 64/67 (95.52%), Query Frame = 1


Query: 13  QAVDTVVAGILHDIVDDTCQKLHSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRVNLNP 72
           +A+DTVVAGILHD+VDDTC+ LHS+EEEFGD+VAKLVAGVSRLSYINQLLRRHRR+N+N 
Sbjct: 167 RAIDTVVAGILHDVVDDTCESLHSVEEEFGDDVAKLVAGVSRLSYINQLLRRHRRINVNQ 226

Query: 73  GSLGHEE 80
           G LGHEE
Sbjct: 227 GILGHEE 233

[Close]

BLAST of CSPI04G08450 vs. TrEMBL
Match: A0A067EHC5_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g003224mg PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 9.1e-25
Identity = 57/68 (83.82%), Postives = 64/68 (94.12%), Query Frame = 1


Query: 13  QAVDTVVAGILHDIVDDTCQKLHSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRVNLNP 72
           +AVDTVVAGILHD+VDD C+ L SIEEEFGDEVAKLVAGVSRLSYINQLLRRHRR+N+N 
Sbjct: 147 RAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQ 206

Query: 73  GSLGHEEV 81
           G+LGHEE+
Sbjct: 207 GTLGHEEL 214

[Close]

BLAST of CSPI04G08450 vs. TrEMBL
Match: V4VTC6_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10018854mg PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 1.6e-24
Identity = 57/67 (85.07%), Postives = 63/67 (94.03%), Query Frame = 1


Query: 13  QAVDTVVAGILHDIVDDTCQKLHSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRVNLNP 72
           +AVDTVVAGILHD+VDD C+ L SIEEEFGDEVAKLVAGVSRLSYINQLLRRHRR+N+N 
Sbjct: 147 RAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQ 206

Query: 73  GSLGHEE 80
           G+LGHEE
Sbjct: 207 GTLGHEE 213

[Close]

BLAST of CSPI04G08450 vs. TrEMBL
Match: V4T7Z9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10018854mg PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 1.6e-24
Identity = 57/67 (85.07%), Postives = 63/67 (94.03%), Query Frame = 1


Query: 13 QAVDTVVAGILHDIVDDTCQKLHSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRVNLNP 72
          +AVDTVVAGILHD+VDD C+ L SIEEEFGDEVAKLVAGVSRLSYINQLLRRHRR+N+N 
Sbjct: 9  RAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQ 68

Query: 73 GSLGHEE 80
          G+LGHEE
Sbjct: 69 GTLGHEE 75

[Close]

BLAST of CSPI04G08450 vs. NCBI nr
Match: gi|700198472|gb|KGN53630.1| (hypothetical protein Csa_4G092450 [Cucumis sativus])

HSP 1 Score: 159.5 bits (402), Expect = 2.5e-36
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 1


Query: 1  MSRHLINLKFTLQAVDTVVAGILHDIVDDTCQKLHSIEEEFGDEVAKLVAGVSRLSYINQ 60
          MSRHLINLKFTLQAVDTVVAGILHDIVDDTCQKLHSIEEEFGDEVAKLVAGVSRLSYINQ
Sbjct: 1  MSRHLINLKFTLQAVDTVVAGILHDIVDDTCQKLHSIEEEFGDEVAKLVAGVSRLSYINQ 60

Query: 61 LLRRHRRVNLNPGSLGHEE 80
          LLRRHRRVNLNPGSLGHEE
Sbjct: 61 LLRRHRRVNLNPGSLGHEE 79

[Close]

BLAST of CSPI04G08450 vs. NCBI nr
Match: gi|778691717|ref|XP_011653335.1| (PREDICTED: uncharacterized protein LOC101208449 isoform X1 [Cucumis sativus])

HSP 1 Score: 134.8 bits (338), Expect = 6.7e-29
Identity = 66/67 (98.51%), Postives = 67/67 (100.00%), Query Frame = 1


Query: 13  QAVDTVVAGILHDIVDDTCQKLHSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRVNLNP 72
           +AVDTVVAGILHDIVDDTCQKLHSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRVNLNP
Sbjct: 186 RAVDTVVAGILHDIVDDTCQKLHSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRVNLNP 245

Query: 73  GSLGHEE 80
           GSLGHEE
Sbjct: 246 GSLGHEE 252

[Close]

BLAST of CSPI04G08450 vs. NCBI nr
Match: gi|659125914|ref|XP_008462918.1| (PREDICTED: uncharacterized protein LOC103501185 isoform X1 [Cucumis melo])

HSP 1 Score: 132.9 bits (333), Expect = 2.5e-28
Identity = 65/67 (97.01%), Postives = 66/67 (98.51%), Query Frame = 1


Query: 13  QAVDTVVAGILHDIVDDTCQKLHSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRVNLNP 72
           +AVDTVVAGILHDIVDDTCQ LHSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRVNLNP
Sbjct: 186 RAVDTVVAGILHDIVDDTCQNLHSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRVNLNP 245

Query: 73  GSLGHEE 80
           GSLGHEE
Sbjct: 246 GSLGHEE 252

[Close]

BLAST of CSPI04G08450 vs. NCBI nr
Match: gi|659125918|ref|XP_008462920.1| (PREDICTED: uncharacterized protein LOC103501185 isoform X3 [Cucumis melo])

HSP 1 Score: 132.9 bits (333), Expect = 2.5e-28
Identity = 65/67 (97.01%), Postives = 66/67 (98.51%), Query Frame = 1


Query: 13 QAVDTVVAGILHDIVDDTCQKLHSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRVNLNP 72
          +AVDTVVAGILHDIVDDTCQ LHSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRVNLNP
Sbjct: 29 RAVDTVVAGILHDIVDDTCQNLHSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRVNLNP 88

Query: 73 GSLGHEE 80
          GSLGHEE
Sbjct: 89 GSLGHEE 95

[Close]

BLAST of CSPI04G08450 vs. NCBI nr
Match: gi|731422480|ref|XP_010662123.1| (PREDICTED: uncharacterized protein LOC100247726 isoform X1 [Vitis vinifera])

HSP 1 Score: 122.5 bits (306), Expect = 3.4e-25
Identity = 56/67 (83.58%), Postives = 64/67 (95.52%), Query Frame = 1


Query: 13  QAVDTVVAGILHDIVDDTCQKLHSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRVNLNP 72
           +A+DTVVAGILHD+VDDTC+ LHS+EEEFGD+VAKLVAGVSRLSYINQLLRRHRR+N+N 
Sbjct: 175 RAIDTVVAGILHDVVDDTCESLHSVEEEFGDDVAKLVAGVSRLSYINQLLRRHRRINVNQ 234

Query: 73  GSLGHEE 80
           G LGHEE
Sbjct: 235 GILGHEE 241

The following BLAST results are available for this feature:

BLAST of CSPI04G08450 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI04G08450 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KVK1_CUCSA	1.8e-36	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G092450 PE=4 SV=1	[more]
D7T7R8_VITVI	2.4e-25	83.58	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0039g02260 PE=4 SV=...	[more]
A0A067EHC5_CITSI	9.1e-25	83.82	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g003224mg PE=4 SV=1	[more]
V4VTC6_9ROSI	1.6e-24	85.07	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10018854mg PE=4 SV=1	[more]
V4T7Z9_9ROSI	1.6e-24	85.07	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10018854mg PE=4 SV=1	[more]

BLAST of CSPI04G08450 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI04G08450 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700198472\|gb\|KGN53630.1\|	2.5e-36	100.00	hypothetical protein Csa_4G092450 [Cucumis sativus]	[more]
gi\|778691717\|ref\|XP_011653335.1\|	6.7e-29	98.51	PREDICTED: uncharacterized protein LOC101208449 isoform X1 [Cucumis sativus]	[more]
gi\|659125914\|ref\|XP_008462918.1\|	2.5e-28	97.01	PREDICTED: uncharacterized protein LOC103501185 isoform X1 [Cucumis melo]	[more]
gi\|659125918\|ref\|XP_008462920.1\|	2.5e-28	97.01	PREDICTED: uncharacterized protein LOC103501185 isoform X3 [Cucumis melo]	[more]
gi\|731422480\|ref\|XP_010662123.1\|	3.4e-25	83.58	PREDICTED: uncharacterized protein LOC100247726 isoform X1 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003607	HD/PDEase_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015969	guanosine tetraphosphate metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G08450.1	CSPI04G08450.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003607	HD/PDEase domain	PFAM	PF13328	HD_4	coord: 15..62 score: 1.2
None	No IPR available	PANTHER	PTHR21262	GUANOSINE-3',5'-BIS DIPHOSPHATE 3'-PYROPHOSPHOHYDROLASE	coord: 14..69 score: 2.4
None	No IPR available	PANTHER	PTHR21262:SF7	SUBFAMILY NOT NAMED	coord: 14..69 score: 2.4
None	No IPR available	unknown	SSF109604	HD-domain/PDEase-like	coord: 14..67 score: 2.62

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI04G08450	Csa4G092450	Cucumber (Chinese Long) v2	cpicuB182

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI04G08450	Watermelon (97103) v2	cpiwmbB283
CSPI04G08450	Wax gourd	cpiwgoB362
CSPI04G08450	Cucumber (Gy14) v1	cgycpiB411
CSPI04G08450	Melon (DHL92) v3.5.1	cpimeB312
CSPI04G08450	Melon (DHL92) v3.5.1	cpimeB318
CSPI04G08450	Watermelon (Charleston Gray)	cpiwcgB285
CSPI04G08450	Watermelon (97103) v1	cpiwmB295
CSPI04G08450	Bottle gourd (USVL1VR-Ls)	cpilsiB281
CSPI04G08450	Melon (DHL92) v3.6.1	cpimedB303
CSPI04G08450	Melon (DHL92) v3.6.1	cpimedB310
CSPI04G08450	Cucumber (Gy14) v2	cgybcpiB168
CSPI04G08450	Cucumber (Chinese Long) v3	cpicucB213