CSPI04G00920 (gene) Wild cucumber (PI 183967)
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCACCTCGCTTCTCCTCCGGCGTCAAGGTCCTACCCGGTTTCGTTTTCGATAGCTTTCTTAACGCTATCGTCAGGTACTATTAGATGGGTGAGGACTATATATAATTGTGAAACAACTTACAATTTTACGAAAAGTAGTATTTTTTTTAACGTGGTGTGGTTGAACAGGCGTGGATATACGGCGGAACCAATGGCAATGGCAGCGTCAGAAAGAGCGACGACGTCTACACCGGCTGCGGGAGGAGTACTTCCGGCCACACGAAGCGATGGAGTGATCATGGAGAAAGAAGAATCAGAAAGGAGTACAGAGAAGGCCGCGGTGTGGATACCCGACCCGGTTACCGGGTGTTATCGACCGGAGAGCAACATGGATGAGATGGACGCCGTGGATCTTCGTGCTAAGCTATTGAAGCCGAGAAGAAATACAGTTAATTGA ATGGCACCTCGCTTCTCCTCCGGCGTCAAGGTCCTACCCGGTTTCGTTTTCGATAGCTTTCTTAACGCTATCGTCAGGCGTGGATATACGGCGGAACCAATGGCAATGGCAGCGTCAGAAAGAGCGACGACGTCTACACCGGCTGCGGGAGGAGTACTTCCGGCCACACGAAGCGATGGAGTGATCATGGAGAAAGAAGAATCAGAAAGGAGTACAGAGAAGGCCGCGGTGTGGATACCCGACCCGGTTACCGGGTGTTATCGACCGGAGAGCAACATGGATGAGATGGACGCCGTGGATCTTCGTGCTAAGCTATTGAAGCCGAGAAGAAATACAGTTAATTGA ATGGCACCTCGCTTCTCCTCCGGCGTCAAGGTCCTACCCGGTTTCGTTTTCGATAGCTTTCTTAACGCTATCGTCAGGCGTGGATATACGGCGGAACCAATGGCAATGGCAGCGTCAGAAAGAGCGACGACGTCTACACCGGCTGCGGGAGGAGTACTTCCGGCCACACGAAGCGATGGAGTGATCATGGAGAAAGAAGAATCAGAAAGGAGTACAGAGAAGGCCGCGGTGTGGATACCCGACCCGGTTACCGGGTGTTATCGACCGGAGAGCAACATGGATGAGATGGACGCCGTGGATCTTCGTGCTAAGCTATTGAAGCCGAGAAGAAATACAGTTAATTGA
BLAST of CSPI04G00920 vs. Swiss-Prot
Match: SAG21_ARATH (Protein SENESCENCE-ASSOCIATED GENE 21, mitochondrial OS=Arabidopsis thaliana GN=SAG21 PE=2 SV=1) HSP 1 Score: 70.1 bits (170), Expect = 1.8e-11 Identity = 43/107 (40.19%), Postives = 62/107 (57.94%), Query Frame = 1
BLAST of CSPI04G00920 vs. Swiss-Prot
Match: ARG2_VIGRR (Indole-3-acetic acid-induced protein ARG2 OS=Vigna radiata var. radiata GN=ARG2 PE=2 SV=1) HSP 1 Score: 64.7 bits (156), Expect = 7.6e-10 Identity = 44/108 (40.74%), Postives = 57/108 (52.78%), Query Frame = 1
BLAST of CSPI04G00920 vs. Swiss-Prot
Match: LEA5D_GOSHI (Late embryogenesis abundant protein Lea5-D OS=Gossypium hirsutum GN=LEA5-D PE=2 SV=1) HSP 1 Score: 60.5 bits (145), Expect = 1.4e-08 Identity = 39/106 (36.79%), Postives = 52/106 (49.06%), Query Frame = 1
BLAST of CSPI04G00920 vs. Swiss-Prot
Match: LEA5A_GOSHI (Late embryogenesis abundant protein Lea5-A OS=Gossypium hirsutum GN=LEA5-A PE=2 SV=1) HSP 1 Score: 59.3 bits (142), Expect = 3.2e-08 Identity = 39/106 (36.79%), Postives = 53/106 (50.00%), Query Frame = 1
BLAST of CSPI04G00920 vs. TrEMBL
Match: A0A0A0KV78_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G001860 PE=4 SV=1) HSP 1 Score: 224.6 bits (571), Expect = 6.4e-56 Identity = 112/114 (98.25%), Postives = 113/114 (99.12%), Query Frame = 1
BLAST of CSPI04G00920 vs. TrEMBL
Match: A0A0A0K996_CUCSA (Protein induced upon tuberization OS=Cucumis sativus GN=Csa_7G398090 PE=4 SV=1) HSP 1 Score: 74.7 bits (182), Expect = 8.1e-11 Identity = 40/104 (38.46%), Postives = 56/104 (53.85%), Query Frame = 1
BLAST of CSPI04G00920 vs. TrEMBL
Match: A0A0B0NVT5_GOSAR (Indole-3-acetic acid-induced ARG2 OS=Gossypium arboreum GN=F383_09658 PE=4 SV=1) HSP 1 Score: 70.5 bits (171), Expect = 1.5e-09 Identity = 42/103 (40.78%), Postives = 56/103 (54.37%), Query Frame = 1
BLAST of CSPI04G00920 vs. TrEMBL
Match: O65149_TOBAC (Late embryogenis abundant protein 5 OS=Nicotiana tabacum GN=lea5 PE=2 SV=1) HSP 1 Score: 70.1 bits (170), Expect = 2.0e-09 Identity = 45/113 (39.82%), Postives = 63/113 (55.75%), Query Frame = 1
BLAST of CSPI04G00920 vs. TrEMBL
Match: A0A0V0HQP8_SOLCH (Putative late embryogenesis abundant protein Lea5-like OS=Solanum chacoense PE=4 SV=1) HSP 1 Score: 70.1 bits (170), Expect = 2.0e-09 Identity = 44/110 (40.00%), Postives = 55/110 (50.00%), Query Frame = 1
BLAST of CSPI04G00920 vs. TAIR10
Match: AT4G02380.1 (AT4G02380.1 senescence-associated gene 21) HSP 1 Score: 70.1 bits (170), Expect = 1.0e-12 Identity = 43/107 (40.19%), Postives = 62/107 (57.94%), Query Frame = 1
BLAST of CSPI04G00920 vs. TAIR10
Match: AT1G02820.1 (AT1G02820.1 Late embryogenesis abundant 3 (LEA3) family protein) HSP 1 Score: 53.9 bits (128), Expect = 7.5e-08 Identity = 37/107 (34.58%), Postives = 51/107 (47.66%), Query Frame = 1
BLAST of CSPI04G00920 vs. NCBI nr
Match: gi|700197661|gb|KGN52819.1| (hypothetical protein Csa_4G001860 [Cucumis sativus]) HSP 1 Score: 224.6 bits (571), Expect = 9.1e-56 Identity = 112/114 (98.25%), Postives = 113/114 (99.12%), Query Frame = 1
BLAST of CSPI04G00920 vs. NCBI nr
Match: gi|659108673|ref|XP_008454328.1| (PREDICTED: late embryogenesis abundant protein Lea5-A-like [Cucumis melo]) HSP 1 Score: 107.5 bits (267), Expect = 1.6e-20 Identity = 61/83 (73.49%), Postives = 67/83 (80.72%), Query Frame = 1
BLAST of CSPI04G00920 vs. NCBI nr
Match: gi|449436481|ref|XP_004136021.1| (PREDICTED: indole-3-acetic acid-induced protein ARG2 [Cucumis sativus]) HSP 1 Score: 74.7 bits (182), Expect = 1.2e-10 Identity = 40/104 (38.46%), Postives = 56/104 (53.85%), Query Frame = 1
BLAST of CSPI04G00920 vs. NCBI nr
Match: gi|698508120|ref|XP_009799351.1| (PREDICTED: late embryogenesis abundant protein Lea5-like [Nicotiana sylvestris]) HSP 1 Score: 72.0 bits (175), Expect = 7.6e-10 Identity = 48/114 (42.11%), Postives = 64/114 (56.14%), Query Frame = 1
BLAST of CSPI04G00920 vs. NCBI nr
Match: gi|659101343|ref|XP_008451558.1| (PREDICTED: indole-3-acetic acid-induced protein ARG2-like [Cucumis melo]) HSP 1 Score: 71.6 bits (174), Expect = 9.9e-10 Identity = 43/106 (40.57%), Postives = 59/106 (55.66%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |