CSPI03G25080 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI03G25080
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	Chr3 : 22290261 .. 22291553 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAGAAAACAGAAACAAGGTGCAAATGATAGAAGATATCATGAAAGGGTCTGATAGGAGTGGGAAGCTTTTGATGTCGGTGAAGCAAACTCAAAATCGTTTGTACAAGATAACTTTGAAGACACTCAAGCAAGTCTGCCTTCTGACAAGCCTAGAAGATCCAACATGGTTATGGCACGTGAGACTTGGCCATGTAAATTTTCATGACTTGAAGCTCATGGGGGAGAAGAAATTGGTAGTTGGAGTACCACTAGTGACTCAACCGAACAAGTTATGTGAAGCGTGCGTGATTACCAAACAAGCCAGATTGCCCTTCCCCCGTCAATCAACATATAGAGCAGAGAAGCCATTAGAACTCCTCCATGCTGATATATGCGGACCGATTTCACCACGTACTCTTGCTGGAAACAAGTATTTTCTGTTGATCGTTGACGATTCCACGAGATGGATGTGGTTGTATATGTTGGAGGCAAAAAGTGATGGATTTGAAGCATTCAATAAATTCAAACTCTTAATGGAGAACAAAACGGAGTACAAGATCAGAACGCTCCGGATGGATCGAGGTGGTGAGTTCTTATCTGCAGAGTTCACTCAATTTTGCAAAAAAGAAGGAATCGAACGACCCCTCACCGCTCCATATTCACCACAACAAAATGGCATTATAGAGCGTCGTAACCGCACCGTAATGGCGAGGACGAGATCACTCCTCAAAAGCATGCATGTGCCTGCAAAATTTTGGGGAGAGGCATTGAGACACACGGTTTATTTGTTAAATTGTCTTCCAACGAAGGCCCTTGGAGAACGCACACCATTTGAAGCTTGGATGGGGAGAAAGCCACATCTTGCACACTTGAGAGTCTTTGGTTGTGTGGCATATGTAAAGAACACAACCCCTCACTTCAAGAAACTCGATGATCGAAGCTCACCAATGGTATATTTTGGTGTCGAAGAAGGATGCAAAGCCCATCGCTTATATGACCCAGGCCGTGGAAAACTACAAATCAGTAGAGATGTTCTTTTTCAAGAGAATCTTGAATGGGCTTGGAATGAAGTTGTCAGTGACGGTAAGGAGATTACAGAGTTTCAGGTGATGGACCAATTTTATTCTGACGAGTTCGAAAACTTGGAGGATGCAGAAACTTGGGTTGAAAATGCCTTCCCACATGCAACTGAGATACCTGCGATTGGAGAGACCAGTTCATCTCCTCCATCGACGAACACACCGGTTCGTCTAAGATCTCTCAGTGACATCTACGCCAACACAGAGGAAGTTGTAGGTGGTGATGAATAA

mRNA sequence

ATGACAGAAAACAGAAACAAGGTGCAAATGATAGAAGATATCATGAAAGGGTCTGATAGGAGTGGGAAGCTTTTGATGTCGGTGAAGCAAACTCAAAATCGTTTGTACAAGATAACTTTGAAGACACTCAAGCAAGTCTGCCTTCTGACAAGCCTAGAAGATCCAACATGGTTATGGCACGTGAGACTTGGCCATGTAAATTTTCATGACTTGAAGCTCATGGGGGAGAAGAAATTGGTAGTTGGAGTACCACTAGTGACTCAACCGAACAAGTTATGTGAAGCGTGCGTGATTACCAAACAAGCCAGATTGCCCTTCCCCCGTCAATCAACATATAGAGCAGAGAAGCCATTAGAACTCCTCCATGCTGATATATGCGGACCGATTTCACCACGTACTCTTGCTGGAAACAAGTATTTTCTGTTGATCGTTGACGATTCCACGAGATGGATGTGGTTGTATATGTTGGAGGCAAAAAGTGATGGATTTGAAGCATTCAATAAATTCAAACTCTTAATGGAGAACAAAACGGAGTACAAGATCAGAACGCTCCGGATGGATCGAGGTGGTGAGTTCTTATCTGCAGAGTTCACTCAATTTTGCAAAAAAGAAGGAATCGAACGACCCCTCACCGCTCCATATTCACCACAACAAAATGGCATTATAGAGCGTCGTAACCGCACCGTAATGGCGAGGACGAGATCACTCCTCAAAAGCATGCATGTGCCTGCAAAATTTTGGGGAGAGGCATTGAGACACACGGTTTATTTGTTAAATTGTCTTCCAACGAAGGCCCTTGGAGAACGCACACCATTTGAAGCTTGGATGGGGAGAAAGCCACATCTTGCACACTTGAGAGTCTTTGGTTGTGTGGCATATGTAAAGAACACAACCCCTCACTTCAAGAAACTCGATGATCGAAGCTCACCAATGGTATATTTTGGTGTCGAAGAAGGATGCAAAGCCCATCGCTTATATGACCCAGGCCGTGGAAAACTACAAATCAGTAGAGATGTTCTTTTTCAAGAGAATCTTGAATGGGCTTGGAATGAAGTTGTCAGTGACGGTAAGGAGATTACAGAGTTTCAGGTGATGGACCAATTTTATTCTGACGAGTTCGAAAACTTGGAGGATGCAGAAACTTGGGTTGAAAATGCCTTCCCACATGCAACTGAGATACCTGCGATTGGAGAGACCAGTTCATCTCCTCCATCGACGAACACACCGGTTCGTCTAAGATCTCTCAGTGACATCTACGCCAACACAGAGGAAGTTGTAGGTGGTGATGAATAA

Coding sequence (CDS)

ATGACAGAAAACAGAAACAAGGTGCAAATGATAGAAGATATCATGAAAGGGTCTGATAGGAGTGGGAAGCTTTTGATGTCGGTGAAGCAAACTCAAAATCGTTTGTACAAGATAACTTTGAAGACACTCAAGCAAGTCTGCCTTCTGACAAGCCTAGAAGATCCAACATGGTTATGGCACGTGAGACTTGGCCATGTAAATTTTCATGACTTGAAGCTCATGGGGGAGAAGAAATTGGTAGTTGGAGTACCACTAGTGACTCAACCGAACAAGTTATGTGAAGCGTGCGTGATTACCAAACAAGCCAGATTGCCCTTCCCCCGTCAATCAACATATAGAGCAGAGAAGCCATTAGAACTCCTCCATGCTGATATATGCGGACCGATTTCACCACGTACTCTTGCTGGAAACAAGTATTTTCTGTTGATCGTTGACGATTCCACGAGATGGATGTGGTTGTATATGTTGGAGGCAAAAAGTGATGGATTTGAAGCATTCAATAAATTCAAACTCTTAATGGAGAACAAAACGGAGTACAAGATCAGAACGCTCCGGATGGATCGAGGTGGTGAGTTCTTATCTGCAGAGTTCACTCAATTTTGCAAAAAAGAAGGAATCGAACGACCCCTCACCGCTCCATATTCACCACAACAAAATGGCATTATAGAGCGTCGTAACCGCACCGTAATGGCGAGGACGAGATCACTCCTCAAAAGCATGCATGTGCCTGCAAAATTTTGGGGAGAGGCATTGAGACACACGGTTTATTTGTTAAATTGTCTTCCAACGAAGGCCCTTGGAGAACGCACACCATTTGAAGCTTGGATGGGGAGAAAGCCACATCTTGCACACTTGAGAGTCTTTGGTTGTGTGGCATATGTAAAGAACACAACCCCTCACTTCAAGAAACTCGATGATCGAAGCTCACCAATGGTATATTTTGGTGTCGAAGAAGGATGCAAAGCCCATCGCTTATATGACCCAGGCCGTGGAAAACTACAAATCAGTAGAGATGTTCTTTTTCAAGAGAATCTTGAATGGGCTTGGAATGAAGTTGTCAGTGACGGTAAGGAGATTACAGAGTTTCAGGTGATGGACCAATTTTATTCTGACGAGTTCGAAAACTTGGAGGATGCAGAAACTTGGGTTGAAAATGCCTTCCCACATGCAACTGAGATACCTGCGATTGGAGAGACCAGTTCATCTCCTCCATCGACGAACACACCGGTTCGTCTAAGATCTCTCAGTGACATCTACGCCAACACAGAGGAAGTTGTAGGTGGTGATGAATAA

Homology

[Close]

BLAST of CSPI03G25080 vs. Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 1.2e-60
Identity = 114/323 (35.29%), Postives = 186/323 (57.59%), Query Frame = 1


Query: 22  GKLLMSVKQTQNRLYKITLKTLKQVCLLTSLEDPTWLWHVRLGHVNFHDLKLMGEKKLVV 81
           G L+++    +  LY+   +  +        E    LWH R+GH++   L+++ +K L+ 
Sbjct: 388 GSLVIAKGVARGTLYRTNAEICQGELNAAQDEISVDLWHKRMGHMSEKGLQILAKKSLIS 447

Query: 82  GVPLVTQPNKLCEACVITKQARLPFPRQSTYRAEKPLELLHADICGPISPRTLAGNKYFL 141
                T   K C+ C+  KQ R+ F + S+ R    L+L+++D+CGP+   ++ GNKYF+
Sbjct: 448 YAKGTTV--KPCDYCLFGKQHRVSF-QTSSERKLNILDLVYSDVCGPMEIESMGGNKYFV 507

Query: 142 LIVDDSTRWMWLYMLEAKSDGFEAFNKFKLLMENKTEYKIRTLRMDRGGEFLSAEFTQFC 201
             +DD++R +W+Y+L+ K   F+ F KF  L+E +T  K++ LR D GGE+ S EF ++C
Sbjct: 508 TFIDDASRKLWVYILKTKDQVFQVFQKFHALVERETGRKLKRLRSDNGGEYTSREFEEYC 567

Query: 202 KKEGIERPLTAPYSPQQNGIIERRNRTVMARTRSLLKSMHVPAKFWGEALRHTVYLLNCL 261
              GI    T P +PQ NG+ ER NRT++ + RS+L+   +P  FWGEA++   YL+N  
Sbjct: 568 SSHGIRHEKTVPGTPQHNGVAERMNRTIVEKVRSMLRMAKLPKSFWGEAVQTACYLINRS 627

Query: 262 PTKALGERTPFEAWMGRKPHLAHLRVFGCVAYVKNTTPHFKKLDDRSSPMVYFGVEEGCK 321
           P+  L    P   W  ++   +HL+VFGC A+         KLDD+S P ++ G  +   
Sbjct: 628 PSVPLAFEIPERVWTNKEVSYSHLKVFGCRAFAHVPKEQRTKLDDKSIPCIFIGYGDEEF 687

Query: 322 AHRLYDPGRGKLQISRDVLFQEN 345
            +RL+DP + K+  SRDV+F+E+
Sbjct: 688 GYRLWDPVKKKVIRSRDVVFRES 707

[Close]

BLAST of CSPI03G25080 vs. Swiss-Prot
Match: COPIA_DROME (Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3)

HSP 1 Score: 206.5 bits (524), Expect = 6.0e-52
Identity = 118/345 (34.20%), Postives = 180/345 (52.17%), Query Frame = 1


Query: 58  LWHVRLGHVNFHDLKLMGEKKLVVGVPLVTQPN---KLCEACVITKQARLPFPR-QSTYR 117
           LWH R GH++   L  +  K +     L+       ++CE C+  KQARLPF + +    
Sbjct: 417 LWHERFGHISDGKLLEIKRKNMFSDQSLLNNLELSCEICEPCLNGKQARLPFKQLKDKTH 476

Query: 118 AEKPLELLHADICGPISPRTLAGNKYFLLIVDDSTRWMWLYMLEAKSDGFEAFNKFKLLM 177
            ++PL ++H+D+CGPI+P TL    YF++ VD  T +   Y+++ KSD F  F  F    
Sbjct: 477 IKRPLFVVHSDVCGPITPVTLDDKNYFVIFVDQFTHYCVTYLIKYKSDVFSMFQDFVAKS 536

Query: 178 ENKTEYKIRTLRMDRGGEFLSAEFTQFCKKEGIERPLTAPYSPQQNGIIERRNRTVMART 237
           E     K+  L +D G E+LS E  QFC K+GI   LT P++PQ NG+ ER  RT+  + 
Sbjct: 537 EAHFNLKVVYLYIDNGREYLSNEMRQFCVKKGISYHLTVPHTPQLNGVSERMIRTITEKA 596

Query: 238 RSLLKSMHVPAKFWGEALRHTVYLLNCLPTKAL--GERTPFEAWMGRKPHLAHLRVFGCV 297
           R+++    +   FWGEA+    YL+N +P++AL    +TP+E W  +KP+L HLRVFG  
Sbjct: 597 RTMVSGAKLDKSFWGEAVLTATYLINRIPSRALVDSSKTPYEMWHNKKPYLKHLRVFGAT 656

Query: 298 AYVKNTTPHFK----KLDDRSSPMVYFGVEEGCKAHRLYDPGRGKLQISRDVLFQENLEW 357
            YV     H K    K DD+S   ++ G E      +L+D    K  ++RDV+  E    
Sbjct: 657 VYV-----HIKNKQGKFDDKSFKSIFVGYEP--NGFKLWDAVNEKFIVARDVVVDET--- 716

Query: 358 AWNEVVSDGKEITEFQVMDQFYSDEFENLEDAETWVENAFPHATE 393
             N V S   +     + D   S+      D+   ++  FP+ ++
Sbjct: 717 --NMVNSRAVKFETVFLKDSKESENKNFPNDSRKIIQTEFPNESK 749

[Close]

BLAST of CSPI03G25080 vs. Swiss-Prot
Match: YP41B_YEAST (Transposon Ty4-P Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY4B-P PE=5 SV=2)

HSP 1 Score: 93.6 bits (231), Expect = 5.7e-18
Identity = 82/339 (24.19%), Postives = 148/339 (43.66%), Query Frame = 1


Query: 8   VQMIEDIMKGSDRSGKLLMSVKQTQNRLYKITLKTLKQVCLLTSLEDPTWLWHVRLGHVN 67
           V+M E I + SD S   + ++K T +  +K+  +++       +LED     H R+GH  
Sbjct: 522 VKMNELIERPSDDSK--INAIKPTSSPGFKLNKRSI-------TLEDA----HKRMGHTG 581

Query: 68  FHDLK-LMGEKKLVVGVPLVTQPNKL-CEACVI---TKQARLPFPRQSTYRAEKPLELLH 127
              ++  +        + L+ +PN+  C+ C I   TK+        +     +P     
Sbjct: 582 IQQIENSIKHNHYEESLDLIKEPNEFWCQTCKISKATKRNHYTGSMNNHSTDHEPGSSWC 641

Query: 128 ADICGPISPRTLAGNKYFLLIVDDSTRWMWL--YMLEAKSDGFEAFNKFKLLMENKTEYK 187
            DI GP+S       +Y L++VD++TR+     +  +          K    +E + + K
Sbjct: 642 MDIFGPVSSSNADTKRYMLIMVDNNTRYCMTSTHFNKNAETILAQIRKNIQYVETQFDRK 701

Query: 188 IRTLRMDRGGEFLSAEFTQFCKKEGIERPLTAPYSPQQNGIIERRNRTVMARTRSLLKSM 247
           +R +  DRG EF + +  ++   +GI   LT+      NG  ER  RT++    +LL+  
Sbjct: 702 VREINSDRGTEFTNDQIEEYFISKGIHHILTSTQDHAANGRAERYIRTIVTDATTLLRQS 761

Query: 248 HVPAKFWGEALRHTVYLLNCLPTKALGERTPFEAWMGRKP---HLAHLRVFGCVAYVKNT 307
           ++  KFW  A+     + NCL  K+ G + P +A + R+P    L     FG    + N 
Sbjct: 762 NLRVKFWEYAVTSATNIRNCLEHKSTG-KLPLKA-ISRQPVTVRLMSFLPFGEKGIIWN- 821

Query: 308 TPHFKKLDDRSSPMVYFGVEEGCKAHRLYDPGRGKLQIS 337
             + KKL     P +    +     ++ + P + K+  S
Sbjct: 822 -HNHKKLKPSGLPSIILCKDPNSYGYKFFIPSKNKIVTS 843

[Close]

BLAST of CSPI03G25080 vs. Swiss-Prot
Match: YH41B_YEAST (Transposon Ty4-H Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY4B-H PE=3 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 5.7e-18
Identity = 82/339 (24.19%), Postives = 148/339 (43.66%), Query Frame = 1


Query: 8   VQMIEDIMKGSDRSGKLLMSVKQTQNRLYKITLKTLKQVCLLTSLEDPTWLWHVRLGHVN 67
           V+M E I + SD S   + ++K T +  +K+  +++       +LED     H R+GH  
Sbjct: 522 VKMNELIERPSDDSK--INAIKPTSSPGFKLNKRSI-------TLEDA----HKRMGHTG 581

Query: 68  FHDLK-LMGEKKLVVGVPLVTQPNKL-CEACVI---TKQARLPFPRQSTYRAEKPLELLH 127
              ++  +        + L+ +PN+  C+ C I   TK+        +     +P     
Sbjct: 582 IQQIENSIKHNHYEESLDLIKEPNEFWCQTCKISKATKRNHYTGSMNNHSTDHEPGSSWC 641

Query: 128 ADICGPISPRTLAGNKYFLLIVDDSTRWMWL--YMLEAKSDGFEAFNKFKLLMENKTEYK 187
            DI GP+S       +Y L++VD++TR+     +  +          K    +E + + K
Sbjct: 642 MDIFGPVSSSNADTKRYMLIMVDNNTRYCMTSTHFNKNAETILAQIRKNIQYVETQFDRK 701

Query: 188 IRTLRMDRGGEFLSAEFTQFCKKEGIERPLTAPYSPQQNGIIERRNRTVMARTRSLLKSM 247
           +R +  DRG EF + +  ++   +GI   LT+      NG  ER  RT++    +LL+  
Sbjct: 702 VREINSDRGTEFTNDQIEEYFISKGIHHILTSTQDHAANGRAERYIRTIVTDATTLLRQS 761

Query: 248 HVPAKFWGEALRHTVYLLNCLPTKALGERTPFEAWMGRKP---HLAHLRVFGCVAYVKNT 307
           ++  KFW  A+     + NCL  K+ G + P +A + R+P    L     FG    + N 
Sbjct: 762 NLRVKFWEYAVTSATNIRNCLEHKSTG-KLPLKA-ISRQPVTVRLMSFLPFGEKGIIWN- 821

Query: 308 TPHFKKLDDRSSPMVYFGVEEGCKAHRLYDPGRGKLQIS 337
             + KKL     P +    +     ++ + P + K+  S
Sbjct: 822 -HNHKKLKPSGLPSIILCKDPNSYGYKFFIPSKNKIVTS 843

[Close]

BLAST of CSPI03G25080 vs. Swiss-Prot
Match: YJ41B_YEAST (Transposon Ty4-J Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY4B-J PE=3 SV=3)

HSP 1 Score: 89.0 bits (219), Expect = 1.4e-16
Identity = 81/339 (23.89%), Postives = 147/339 (43.36%), Query Frame = 1


Query: 8   VQMIEDIMKGSDRSGKLLMSVKQTQNRLYKITLKTLKQVCLLTSLEDPTWLWHVRLGHVN 67
           V+M E I + SD S   + ++K T +  +K+  +++       +LED     H R+GH  
Sbjct: 523 VKMNELIERPSDDSK--INAIKPTSSPGFKLNKRSI-------TLEDA----HKRMGHTG 582

Query: 68  FHDLK-LMGEKKLVVGVPLVTQPNKL-CEACVI---TKQARLPFPRQSTYRAEKPLELLH 127
              ++  +        + L+ +PN+  C+ C I   TK+        +     +P     
Sbjct: 583 IQQIENSIKHNHYEESLDLIKEPNEFWCQTCKISKATKRNHYTGSMNNHSTDHEPGSSWC 642

Query: 128 ADICGPISPRTLAGNKYFLLIVDDSTRWMWL--YMLEAKSDGFEAFNKFKLLMENKTEYK 187
            DI GP+S       +Y L++VD++TR+     +  +          K    +E + + K
Sbjct: 643 MDIFGPVSSSNADTKRYMLIMVDNNTRYCMTSTHFNKNAETILAQVRKNIQYVETQFDRK 702

Query: 188 IRTLRMDRGGEFLSAEFTQFCKKEGIERPLTAPYSPQQNGIIERRNRTVMARTRSLLKSM 247
           +R +  DRG EF + +  ++   +GI   LT+      NG  ER  RT++    +LL+  
Sbjct: 703 VREINSDRGTEFTNDQIEEYFISKGIHHILTSTQDHAANGRAERYIRTIITDATTLLRQS 762

Query: 248 HVPAKFWGEALRHTVYLLNCLPTKALGERTPFEAWMGRKP---HLAHLRVFGCVAYVKNT 307
           ++  KFW  A+     + N L  K+ G + P +A + R+P    L     FG    + N 
Sbjct: 763 NLRVKFWEYAVTSATNIRNYLEHKSTG-KLPLKA-ISRQPVTVRLMSFLPFGEKGIIWN- 822

Query: 308 TPHFKKLDDRSSPMVYFGVEEGCKAHRLYDPGRGKLQIS 337
             + KKL     P +    +     ++ + P + K+  S
Sbjct: 823 -HNHKKLKPSGLPSIILCKDPNSYGYKFFIPSKNKIVTS 844

[Close]

BLAST of CSPI03G25080 vs. TrEMBL
Match: Q0J8A6_ORYSJ (Os08g0125300 protein OS=Oryza sativa subsp. japonica GN=Os08g0125300 PE=2 SV=1)

HSP 1 Score: 486.1 bits (1250), Expect = 4.4e-134
Identity = 219/365 (60.00%), Postives = 285/365 (78.08%), Query Frame = 1


Query: 1   MTENRNKVQMIEDIMKGSDRSG-KLLMSVKQTQNRLYKITLKTLKQVCLLTSLEDPTWLW 60
           +TE  ++V M ED+++  D+S  +L+M V++T NRLY+I LK    VCLLT +++P WLW
Sbjct: 436 LTETGHRVVMDEDVLEVFDKSPLRLVMRVRRTPNRLYRIELKLATPVCLLTRMDEPAWLW 495

Query: 61  HVRLGHVNFHDLKLMGEKKLVVGVPLVTQPNKLCEACVITKQARLPFPRQSTYRAEKPLE 120
           H RLGHVNF  +KL+ +K +  G+P +T PN+LC+AC++ KQ R PFP  + +RAE+PLE
Sbjct: 496 HARLGHVNFQAMKLLADKGMAGGIPAITHPNQLCQACLVAKQIRQPFPATANFRAEEPLE 555

Query: 121 LLHADICGPISPRTLAGNKYFLLIVDDSTRWMWLYMLEAKSDGFEAFNKFKLLMENKTEY 180
           LLH D+CGPI+P T+AGN+YF+LIVDD +RWMW+++++ K    EAF KFK L EN    
Sbjct: 556 LLHIDLCGPITPTTMAGNRYFMLIVDDFSRWMWMFVIKTKDQALEAFTKFKPLAENTAGR 615

Query: 181 KIRTLRMDRGGEFLSAEFTQFCKKEGIERPLTAPYSPQQNGIIERRNRTVMARTRSLLKS 240
           +I+TLR DRGGEFLS EF Q C++ GI+R LTAPYSPQQNG++ERRNR+VMA  RSL+K 
Sbjct: 616 RIKTLRSDRGGEFLSGEFAQLCEQAGIQRHLTAPYSPQQNGVVERRNRSVMAMARSLMKG 675

Query: 241 MHVPAKFWGEALRHTVYLLNCLPTKALGERTPFEAWMGRKPHLAHLRVFGCVAYVKNTTP 300
           M VP +FWGEA+RH VYLLN LPTKA+G+RTPFEAW GRKP L HLRVFGC+A+ K TTP
Sbjct: 676 MSVPGRFWGEAVRHAVYLLNRLPTKAMGDRTPFEAWTGRKPQLGHLRVFGCIAHAKITTP 735

Query: 301 HFKKLDDRSSPMVYFGVEEGCKAHRLYDPGRGKLQISRDVLFQENLEWAWNEVVSDGKEI 360
           + KKLDDRS+P VY GVEEG KAHRL+DP  G++ +SRDV+F+EN+ W W+ VV+  +  
Sbjct: 736 NQKKLDDRSAPYVYLGVEEGSKAHRLFDPRCGRIHVSRDVIFEENVPWQWS-VVAGEQNS 795

Query: 361 TEFQV 365
           TEF V
Sbjct: 796 TEFTV 799

[Close]

BLAST of CSPI03G25080 vs. TrEMBL
Match: B8BDZ6_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_30754 PE=4 SV=1)

HSP 1 Score: 486.1 bits (1250), Expect = 4.4e-134
Identity = 219/365 (60.00%), Postives = 285/365 (78.08%), Query Frame = 1


Query: 1   MTENRNKVQMIEDIMKGSDRSG-KLLMSVKQTQNRLYKITLKTLKQVCLLTSLEDPTWLW 60
           +TE  ++V M ED+++  D+S  +L+M V++T NRLY+I LK    VCLLT +++P WLW
Sbjct: 436 LTETGHRVVMDEDVLEVFDKSPLRLVMRVRRTPNRLYRIELKLATPVCLLTRMDEPAWLW 495

Query: 61  HVRLGHVNFHDLKLMGEKKLVVGVPLVTQPNKLCEACVITKQARLPFPRQSTYRAEKPLE 120
           H RLGHVNF  +KL+ +K +  G+P +T PN+LC+AC++ KQ R PFP  + +RAE+PLE
Sbjct: 496 HARLGHVNFQAMKLLADKGMAGGIPAITHPNQLCQACLVAKQIRQPFPATANFRAEEPLE 555

Query: 121 LLHADICGPISPRTLAGNKYFLLIVDDSTRWMWLYMLEAKSDGFEAFNKFKLLMENKTEY 180
           LLH D+CGPI+P T+AGN+YF+LIVDD +RWMW+++++ K    EAF KFK L EN    
Sbjct: 556 LLHIDLCGPITPTTMAGNRYFMLIVDDFSRWMWMFVIKTKDQALEAFTKFKPLAENTAGR 615

Query: 181 KIRTLRMDRGGEFLSAEFTQFCKKEGIERPLTAPYSPQQNGIIERRNRTVMARTRSLLKS 240
           +I+TLR DRGGEFLS EF Q C++ GI+R LTAPYSPQQNG++ERRNR+VMA  RSL+K 
Sbjct: 616 RIKTLRSDRGGEFLSGEFAQLCEQAGIQRHLTAPYSPQQNGVVERRNRSVMAMARSLMKG 675

Query: 241 MHVPAKFWGEALRHTVYLLNCLPTKALGERTPFEAWMGRKPHLAHLRVFGCVAYVKNTTP 300
           M VP +FWGEA+RH VYLLN LPTKA+G+RTPFEAW GRKP L HLRVFGC+A+ K TTP
Sbjct: 676 MSVPGRFWGEAVRHAVYLLNRLPTKAMGDRTPFEAWTGRKPQLGHLRVFGCIAHAKITTP 735

Query: 301 HFKKLDDRSSPMVYFGVEEGCKAHRLYDPGRGKLQISRDVLFQENLEWAWNEVVSDGKEI 360
           + KKLDDRS+P VY GVEEG KAHRL+DP  G++ +SRDV+F+EN+ W W+ VV+  +  
Sbjct: 736 NQKKLDDRSAPYVYLGVEEGSKAHRLFDPRCGRIHVSRDVIFEENVPWQWS-VVAGEQNS 795

Query: 361 TEFQV 365
           TEF V
Sbjct: 796 TEFTV 799

[Close]

BLAST of CSPI03G25080 vs. TrEMBL
Match: Q338J6_ORYSJ (Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica GN=LOC_Os10g26030 PE=4 SV=2)

HSP 1 Score: 466.8 bits (1200), Expect = 2.8e-128
Identity = 230/431 (53.36%), Postives = 292/431 (67.75%), Query Frame = 1


Query: 1   MTENRNKVQMIEDIMKGSDRSG-KLLMSVKQTQNRLYKITLKTLKQVCLLTSLEDPTWLW 60
           +TE  ++V M  D +K  D++  +L+M V++T NRLY+I L+   QVCLL SL++P WLW
Sbjct: 283 LTETGHRVMMDGDDLKVFDKNPWRLVMKVRRTSNRLYRIELQLASQVCLLASLDNPAWLW 342

Query: 61  HVRLGHVNFHDLKLMGEKKLVVGVPLVTQPNKLCEACVITKQARLPFPRQSTYRAEKPLE 120
           H R+GHVNFH LKL+ +K++  GVP V  PN+LC+AC++ KQ R PFP  + YRAE PLE
Sbjct: 343 HARIGHVNFHALKLLVDKEMASGVPTVHHPNQLCQACLVAKQVRQPFPGMANYRAEAPLE 402

Query: 121 LLHADICGPISPRTLAGNKYFLLIVDDSTRWMWLYMLEAKSDGFEAFNKFKLLMENKTEY 180
           LLH D+CGPI+P T AGN+YF+LIVDD + WMW+++++ K      F KFK L +N    
Sbjct: 403 LLHMDLCGPITPSTFAGNRYFMLIVDDFSNWMWVFVIKLKDQALAVFEKFKPLAKNTVGR 462

Query: 181 KIRTLRMDRGGEFLSAEFTQFCKKEGIERPLTAPYSPQQNGIIERRNRTVMARTRSLLKS 240
            I+TLR DRGGEFLS +F + C    IER LTAPYSPQQN ++ERRNRTVMA  RSLLK 
Sbjct: 463 TIKTLRTDRGGEFLSGKFARVCDAASIERHLTAPYSPQQNDVVERRNRTVMAMARSLLKG 522

Query: 241 MHVPAKFWGEALRHTVYLLNCLPTKALGERTPFEAWMGRKPHLAHLRVFGCVAYVKNTTP 300
           M VP + WGEA+RH ++LLN LPTKA+G RTPFEAW G+KPHL HLRVFGC A+ K T P
Sbjct: 523 MSVPGRMWGEAVRHAIFLLNWLPTKAMGNRTPFEAWTGKKPHLGHLRVFGCTAHAKVTAP 582

Query: 301 HFKKLDDRSSPMVYFGVEEGCKAHRLYDPGRGKLQISRDVLFQENLEWAWNEVVSDGKEI 360
           H KKLDDRS+P VY GVEEG KAHRL+DP R ++ +SRDV+F EN  W W+       E+
Sbjct: 583 HLKKLDDRSNPFVYLGVEEGSKAHRLFDPRRRQIIVSRDVVFDENTPWQWSAAAG---EV 642

Query: 361 TEFQVMDQFYSDEFENLEDAETWVENAFPHATEIPAIGETS--SSPPSTNT---PVRLRS 420
           T         S EFE  E          P   E PA+ E +  +SP +  +   PVR RS
Sbjct: 643 T---------STEFEVEE----------PVGAEQPALAEQAGLASPHTAGSDVGPVRYRS 691

Query: 421 LSDIYANTEEV 426
           L++I      V
Sbjct: 703 LAEIMLEAPRV 691

[Close]

BLAST of CSPI03G25080 vs. TrEMBL
Match: Q84SW8_ORYSJ (Gag-pol polyprotein OS=Oryza sativa subsp. japonica GN=LOC_Os03g47410 PE=4 SV=1)

HSP 1 Score: 466.1 bits (1198), Expect = 4.7e-128
Identity = 223/411 (54.26%), Postives = 288/411 (70.07%), Query Frame = 1


Query: 1   MTENRNKVQMIEDIMKGSDRSG-KLLMSVKQTQNRLYKITLKTLKQVCLLTSLEDPTWLW 60
           +TE  ++V M  D ++  D++  +L+M V+++ NRLY+I L+    VCLL SL+DP WLW
Sbjct: 389 LTETGHRVVMDGDDLEVFDKNPWRLVMKVRRSSNRLYRIELQLASPVCLLASLDDPAWLW 448

Query: 61  HVRLGHVNFHDLKLMGEKKLVVGVPLVTQPNKLCEACVITKQARLPFPRQSTYRAEKPLE 120
           H RLGHVNFH LKL+ +K++  GVP V  PN+LC+AC++ KQ R PFP  + Y AE PLE
Sbjct: 449 HARLGHVNFHALKLLVDKEMAAGVPAVHHPNQLCQACLVAKQVRQPFPGMANYLAEAPLE 508

Query: 121 LLHADICGPISPRTLAGNKYFLLIVDDSTRWMWLYMLEAKSDGFEAFNKFKLLMENKTEY 180
           LLH D+CGPI+P T  GN+YF+LIVDD + WMW++++++K     AF KFK L EN    
Sbjct: 509 LLHMDLCGPITPSTFTGNRYFMLIVDDFSHWMWVFVIKSKDQALAAFEKFKPLAENTAGR 568

Query: 181 KIRTLRMDRGGEFLSAEFTQFCKKEGIERPLTAPYSPQQNGIIERRNRTVMARTRSLLKS 240
            I+TLR DRGGEFLS EF + C   GIER LT PYSPQQNG++ERRNRTVMA  RSLLK 
Sbjct: 569 TIKTLRTDRGGEFLSGEFARVCDAAGIERHLTVPYSPQQNGVVERRNRTVMAMARSLLKG 628

Query: 241 MHVPAKFWGEALRHTVYLLNCLPTKALGERTPFEAWMGRKPHLAHLRVFGCVAYVKNTTP 300
           M VP + WGEA+RH V+LLN LPTKA+G RTPFEAW G+KPHL HLRVFGC A+ K T P
Sbjct: 629 MSVPGRMWGEAVRHAVFLLNRLPTKAMGNRTPFEAWTGKKPHLGHLRVFGCTAHAKVTAP 688

Query: 301 HFKKLDDRSSPMVYFGVEEGCKAHRLYDPGRGKLQISRDVLFQENLEWAWNEVVSDGKEI 360
           H KKLDDRS+P+VY GVEEG KAHRL+DP R ++ +SRDV+F EN  W W+    +    
Sbjct: 689 HLKKLDDRSNPVVYLGVEEGSKAHRLFDPRRRQIIVSRDVVFDENTPWQWSAAAGEVTS- 748

Query: 361 TEFQVMDQFYSDEFENLEDAET--W--VENAFPHATEIPAIGETSSSPPST 407
           TEF+V +   +++    E A +  W     A   A + P + E   +PP++
Sbjct: 749 TEFEVEEPVGAEQPAPAEQAGSVPWYRAPPAGRRAGKEPEVAEQRGTPPAS 798

[Close]

BLAST of CSPI03G25080 vs. TrEMBL
Match: Q7XMW2_ORYSJ (OSJNBb0040D15.12 protein OS=Oryza sativa subsp. japonica GN=OSJNBb0040D15.12 PE=4 SV=2)

HSP 1 Score: 459.5 bits (1181), Expect = 4.4e-126
Identity = 230/458 (50.22%), Postives = 299/458 (65.28%), Query Frame = 1


Query: 1   MTENRNKVQMIEDIMKGSDRSG-KLLMSVKQTQNRLYKITLKTLKQVCLLTSLEDPTWLW 60
           +TE  ++V M  D ++  D++  +L+M V++T NRLY+I L+    VCLL SL+DP WLW
Sbjct: 249 LTETGHRVVMDGDDLEVFDKNPWRLVMKVRRTSNRLYRIELQLASPVCLLASLDDPAWLW 308

Query: 61  HVRLGHVNFHDLKLMGEKKLVVGVPLVTQPNKLCEACVITKQARLPFPRQSTYRAEKPLE 120
           H RLGHVNFH LKL+ +K++V GVP V  PN+LC+AC++ KQ R  FP  + YRAE PLE
Sbjct: 309 HARLGHVNFHALKLLVDKEMVAGVPAVHHPNQLCQACLVAKQVRQSFPGMANYRAEAPLE 368

Query: 121 LLHADICGPISPRTLAGNKYFLLIVDDSTRWMWLYMLEAKSDGFEAFNKFKLLMENKTEY 180
           LLH D+CGPI+P T AGN+YF+LIVDD +RWMW++++++K     A  KFK L EN    
Sbjct: 369 LLHMDLCGPITPSTFAGNRYFMLIVDDFSRWMWVFVIKSKDQALAASEKFKPLAENTAGR 428

Query: 181 KIRTLRMDRGGEFLSAEFTQFCKKEGIERPLTAPYSPQQNGIIERRNRTVMARTRSLLKS 240
            I+TLR DRG EFLS EF + C   GIER LTAPYSPQQNG++E RNRTVMA  RSLLK 
Sbjct: 429 TIKTLRTDRGSEFLSGEFARVCDAAGIERHLTAPYSPQQNGVVEHRNRTVMAMARSLLKG 488

Query: 241 MHVPAKFWGEALRHTVYLLNCLPTKALGERTPFEAWMGRKPHLAHLRVFGCVAYVKNTTP 300
           M VP + WGEA+RH V+LLN LPTKA+G RT FEAWMG+KPHL HL VFGC A+ K T P
Sbjct: 489 MSVPGRMWGEAVRHAVFLLNRLPTKAMGNRTSFEAWMGKKPHLGHLWVFGCTAHTKVTAP 548

Query: 301 HFKKLDDRSSPMVYFGVEEGCKAHRLYDPGRGKLQISRDVLFQENLEWAWNEVVSDGKEI 360
           H  KLDDRS+P VY GVEEG KAHRL+DP R ++ +SRDV+F EN  W W+    +    
Sbjct: 549 HLMKLDDRSNPFVYLGVEEGSKAHRLFDPRRRQIIVSRDVVFDENTPWQWSAAAGEVTS- 608

Query: 361 TEFQVMDQFYSDEFENL-------------EDAETWVENAFPHAT---------EIPAIG 420
           TEF+V +   +++  ++             ++ E   +   P A+           P +G
Sbjct: 609 TEFEVEEPVGAEQAASVPWYRAPPAGRRAGKEPEVAEQRGTPPASPARFSPTLPSTPTLG 668

Query: 421 ETSS----------SPPSTNTPVRLRSLSDIYANTEEV 426
            +S+          +P S + PVR RSL +I      V
Sbjct: 669 SSSTHSAEVQASPRTPGSDDGPVRYRSLVEIMLEAPRV 705

[Close]

BLAST of CSPI03G25080 vs. NCBI nr
Match: gi|113622864|dbj|BAF22809.1| (Os08g0125300 [Oryza sativa Japonica Group])

HSP 1 Score: 486.1 bits (1250), Expect = 6.3e-134
Identity = 219/365 (60.00%), Postives = 285/365 (78.08%), Query Frame = 1


Query: 1   MTENRNKVQMIEDIMKGSDRSG-KLLMSVKQTQNRLYKITLKTLKQVCLLTSLEDPTWLW 60
           +TE  ++V M ED+++  D+S  +L+M V++T NRLY+I LK    VCLLT +++P WLW
Sbjct: 436 LTETGHRVVMDEDVLEVFDKSPLRLVMRVRRTPNRLYRIELKLATPVCLLTRMDEPAWLW 495

Query: 61  HVRLGHVNFHDLKLMGEKKLVVGVPLVTQPNKLCEACVITKQARLPFPRQSTYRAEKPLE 120
           H RLGHVNF  +KL+ +K +  G+P +T PN+LC+AC++ KQ R PFP  + +RAE+PLE
Sbjct: 496 HARLGHVNFQAMKLLADKGMAGGIPAITHPNQLCQACLVAKQIRQPFPATANFRAEEPLE 555

Query: 121 LLHADICGPISPRTLAGNKYFLLIVDDSTRWMWLYMLEAKSDGFEAFNKFKLLMENKTEY 180
           LLH D+CGPI+P T+AGN+YF+LIVDD +RWMW+++++ K    EAF KFK L EN    
Sbjct: 556 LLHIDLCGPITPTTMAGNRYFMLIVDDFSRWMWMFVIKTKDQALEAFTKFKPLAENTAGR 615

Query: 181 KIRTLRMDRGGEFLSAEFTQFCKKEGIERPLTAPYSPQQNGIIERRNRTVMARTRSLLKS 240
           +I+TLR DRGGEFLS EF Q C++ GI+R LTAPYSPQQNG++ERRNR+VMA  RSL+K 
Sbjct: 616 RIKTLRSDRGGEFLSGEFAQLCEQAGIQRHLTAPYSPQQNGVVERRNRSVMAMARSLMKG 675

Query: 241 MHVPAKFWGEALRHTVYLLNCLPTKALGERTPFEAWMGRKPHLAHLRVFGCVAYVKNTTP 300
           M VP +FWGEA+RH VYLLN LPTKA+G+RTPFEAW GRKP L HLRVFGC+A+ K TTP
Sbjct: 676 MSVPGRFWGEAVRHAVYLLNRLPTKAMGDRTPFEAWTGRKPQLGHLRVFGCIAHAKITTP 735

Query: 301 HFKKLDDRSSPMVYFGVEEGCKAHRLYDPGRGKLQISRDVLFQENLEWAWNEVVSDGKEI 360
           + KKLDDRS+P VY GVEEG KAHRL+DP  G++ +SRDV+F+EN+ W W+ VV+  +  
Sbjct: 736 NQKKLDDRSAPYVYLGVEEGSKAHRLFDPRCGRIHVSRDVIFEENVPWQWS-VVAGEQNS 795

Query: 361 TEFQV 365
           TEF V
Sbjct: 796 TEFTV 799

[Close]

BLAST of CSPI03G25080 vs. NCBI nr
Match: gi|218201855|gb|EEC84282.1| (hypothetical protein OsI_30754 [Oryza sativa Indica Group])

HSP 1 Score: 486.1 bits (1250), Expect = 6.3e-134
Identity = 219/365 (60.00%), Postives = 285/365 (78.08%), Query Frame = 1


Query: 1   MTENRNKVQMIEDIMKGSDRSG-KLLMSVKQTQNRLYKITLKTLKQVCLLTSLEDPTWLW 60
           +TE  ++V M ED+++  D+S  +L+M V++T NRLY+I LK    VCLLT +++P WLW
Sbjct: 436 LTETGHRVVMDEDVLEVFDKSPLRLVMRVRRTPNRLYRIELKLATPVCLLTRMDEPAWLW 495

Query: 61  HVRLGHVNFHDLKLMGEKKLVVGVPLVTQPNKLCEACVITKQARLPFPRQSTYRAEKPLE 120
           H RLGHVNF  +KL+ +K +  G+P +T PN+LC+AC++ KQ R PFP  + +RAE+PLE
Sbjct: 496 HARLGHVNFQAMKLLADKGMAGGIPAITHPNQLCQACLVAKQIRQPFPATANFRAEEPLE 555

Query: 121 LLHADICGPISPRTLAGNKYFLLIVDDSTRWMWLYMLEAKSDGFEAFNKFKLLMENKTEY 180
           LLH D+CGPI+P T+AGN+YF+LIVDD +RWMW+++++ K    EAF KFK L EN    
Sbjct: 556 LLHIDLCGPITPTTMAGNRYFMLIVDDFSRWMWMFVIKTKDQALEAFTKFKPLAENTAGR 615

Query: 181 KIRTLRMDRGGEFLSAEFTQFCKKEGIERPLTAPYSPQQNGIIERRNRTVMARTRSLLKS 240
           +I+TLR DRGGEFLS EF Q C++ GI+R LTAPYSPQQNG++ERRNR+VMA  RSL+K 
Sbjct: 616 RIKTLRSDRGGEFLSGEFAQLCEQAGIQRHLTAPYSPQQNGVVERRNRSVMAMARSLMKG 675

Query: 241 MHVPAKFWGEALRHTVYLLNCLPTKALGERTPFEAWMGRKPHLAHLRVFGCVAYVKNTTP 300
           M VP +FWGEA+RH VYLLN LPTKA+G+RTPFEAW GRKP L HLRVFGC+A+ K TTP
Sbjct: 676 MSVPGRFWGEAVRHAVYLLNRLPTKAMGDRTPFEAWTGRKPQLGHLRVFGCIAHAKITTP 735

Query: 301 HFKKLDDRSSPMVYFGVEEGCKAHRLYDPGRGKLQISRDVLFQENLEWAWNEVVSDGKEI 360
           + KKLDDRS+P VY GVEEG KAHRL+DP  G++ +SRDV+F+EN+ W W+ VV+  +  
Sbjct: 736 NQKKLDDRSAPYVYLGVEEGSKAHRLFDPRCGRIHVSRDVIFEENVPWQWS-VVAGEQNS 795

Query: 361 TEFQV 365
           TEF V
Sbjct: 796 TEFTV 799

[Close]

BLAST of CSPI03G25080 vs. NCBI nr
Match: gi|110289052|gb|ABB47537.2| (retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group])

HSP 1 Score: 466.8 bits (1200), Expect = 4.0e-128
Identity = 230/431 (53.36%), Postives = 292/431 (67.75%), Query Frame = 1


Query: 1   MTENRNKVQMIEDIMKGSDRSG-KLLMSVKQTQNRLYKITLKTLKQVCLLTSLEDPTWLW 60
           +TE  ++V M  D +K  D++  +L+M V++T NRLY+I L+   QVCLL SL++P WLW
Sbjct: 283 LTETGHRVMMDGDDLKVFDKNPWRLVMKVRRTSNRLYRIELQLASQVCLLASLDNPAWLW 342

Query: 61  HVRLGHVNFHDLKLMGEKKLVVGVPLVTQPNKLCEACVITKQARLPFPRQSTYRAEKPLE 120
           H R+GHVNFH LKL+ +K++  GVP V  PN+LC+AC++ KQ R PFP  + YRAE PLE
Sbjct: 343 HARIGHVNFHALKLLVDKEMASGVPTVHHPNQLCQACLVAKQVRQPFPGMANYRAEAPLE 402

Query: 121 LLHADICGPISPRTLAGNKYFLLIVDDSTRWMWLYMLEAKSDGFEAFNKFKLLMENKTEY 180
           LLH D+CGPI+P T AGN+YF+LIVDD + WMW+++++ K      F KFK L +N    
Sbjct: 403 LLHMDLCGPITPSTFAGNRYFMLIVDDFSNWMWVFVIKLKDQALAVFEKFKPLAKNTVGR 462

Query: 181 KIRTLRMDRGGEFLSAEFTQFCKKEGIERPLTAPYSPQQNGIIERRNRTVMARTRSLLKS 240
            I+TLR DRGGEFLS +F + C    IER LTAPYSPQQN ++ERRNRTVMA  RSLLK 
Sbjct: 463 TIKTLRTDRGGEFLSGKFARVCDAASIERHLTAPYSPQQNDVVERRNRTVMAMARSLLKG 522

Query: 241 MHVPAKFWGEALRHTVYLLNCLPTKALGERTPFEAWMGRKPHLAHLRVFGCVAYVKNTTP 300
           M VP + WGEA+RH ++LLN LPTKA+G RTPFEAW G+KPHL HLRVFGC A+ K T P
Sbjct: 523 MSVPGRMWGEAVRHAIFLLNWLPTKAMGNRTPFEAWTGKKPHLGHLRVFGCTAHAKVTAP 582

Query: 301 HFKKLDDRSSPMVYFGVEEGCKAHRLYDPGRGKLQISRDVLFQENLEWAWNEVVSDGKEI 360
           H KKLDDRS+P VY GVEEG KAHRL+DP R ++ +SRDV+F EN  W W+       E+
Sbjct: 583 HLKKLDDRSNPFVYLGVEEGSKAHRLFDPRRRQIIVSRDVVFDENTPWQWSAAAG---EV 642

Query: 361 TEFQVMDQFYSDEFENLEDAETWVENAFPHATEIPAIGETS--SSPPSTNT---PVRLRS 420
           T         S EFE  E          P   E PA+ E +  +SP +  +   PVR RS
Sbjct: 643 T---------STEFEVEE----------PVGAEQPALAEQAGLASPHTAGSDVGPVRYRS 691

Query: 421 LSDIYANTEEV 426
           L++I      V
Sbjct: 703 LAEIMLEAPRV 691

[Close]

BLAST of CSPI03G25080 vs. NCBI nr
Match: gi|29150404|gb|AAO72413.1| (gag-pol polyprotein [Oryza sativa Japonica Group])

HSP 1 Score: 466.1 bits (1198), Expect = 6.8e-128
Identity = 223/411 (54.26%), Postives = 288/411 (70.07%), Query Frame = 1


Query: 1   MTENRNKVQMIEDIMKGSDRSG-KLLMSVKQTQNRLYKITLKTLKQVCLLTSLEDPTWLW 60
           +TE  ++V M  D ++  D++  +L+M V+++ NRLY+I L+    VCLL SL+DP WLW
Sbjct: 389 LTETGHRVVMDGDDLEVFDKNPWRLVMKVRRSSNRLYRIELQLASPVCLLASLDDPAWLW 448

Query: 61  HVRLGHVNFHDLKLMGEKKLVVGVPLVTQPNKLCEACVITKQARLPFPRQSTYRAEKPLE 120
           H RLGHVNFH LKL+ +K++  GVP V  PN+LC+AC++ KQ R PFP  + Y AE PLE
Sbjct: 449 HARLGHVNFHALKLLVDKEMAAGVPAVHHPNQLCQACLVAKQVRQPFPGMANYLAEAPLE 508

Query: 121 LLHADICGPISPRTLAGNKYFLLIVDDSTRWMWLYMLEAKSDGFEAFNKFKLLMENKTEY 180
           LLH D+CGPI+P T  GN+YF+LIVDD + WMW++++++K     AF KFK L EN    
Sbjct: 509 LLHMDLCGPITPSTFTGNRYFMLIVDDFSHWMWVFVIKSKDQALAAFEKFKPLAENTAGR 568

Query: 181 KIRTLRMDRGGEFLSAEFTQFCKKEGIERPLTAPYSPQQNGIIERRNRTVMARTRSLLKS 240
            I+TLR DRGGEFLS EF + C   GIER LT PYSPQQNG++ERRNRTVMA  RSLLK 
Sbjct: 569 TIKTLRTDRGGEFLSGEFARVCDAAGIERHLTVPYSPQQNGVVERRNRTVMAMARSLLKG 628

Query: 241 MHVPAKFWGEALRHTVYLLNCLPTKALGERTPFEAWMGRKPHLAHLRVFGCVAYVKNTTP 300
           M VP + WGEA+RH V+LLN LPTKA+G RTPFEAW G+KPHL HLRVFGC A+ K T P
Sbjct: 629 MSVPGRMWGEAVRHAVFLLNRLPTKAMGNRTPFEAWTGKKPHLGHLRVFGCTAHAKVTAP 688

Query: 301 HFKKLDDRSSPMVYFGVEEGCKAHRLYDPGRGKLQISRDVLFQENLEWAWNEVVSDGKEI 360
           H KKLDDRS+P+VY GVEEG KAHRL+DP R ++ +SRDV+F EN  W W+    +    
Sbjct: 689 HLKKLDDRSNPVVYLGVEEGSKAHRLFDPRRRQIIVSRDVVFDENTPWQWSAAAGEVTS- 748

Query: 361 TEFQVMDQFYSDEFENLEDAET--W--VENAFPHATEIPAIGETSSSPPST 407
           TEF+V +   +++    E A +  W     A   A + P + E   +PP++
Sbjct: 749 TEFEVEEPVGAEQPAPAEQAGSVPWYRAPPAGRRAGKEPEVAEQRGTPPAS 798

[Close]

BLAST of CSPI03G25080 vs. NCBI nr
Match: gi|38345658|emb|CAE04422.2| (OSJNBb0040D15.12 [Oryza sativa Japonica Group])

HSP 1 Score: 459.5 bits (1181), Expect = 6.3e-126
Identity = 230/458 (50.22%), Postives = 299/458 (65.28%), Query Frame = 1


Query: 1   MTENRNKVQMIEDIMKGSDRSG-KLLMSVKQTQNRLYKITLKTLKQVCLLTSLEDPTWLW 60
           +TE  ++V M  D ++  D++  +L+M V++T NRLY+I L+    VCLL SL+DP WLW
Sbjct: 249 LTETGHRVVMDGDDLEVFDKNPWRLVMKVRRTSNRLYRIELQLASPVCLLASLDDPAWLW 308

Query: 61  HVRLGHVNFHDLKLMGEKKLVVGVPLVTQPNKLCEACVITKQARLPFPRQSTYRAEKPLE 120
           H RLGHVNFH LKL+ +K++V GVP V  PN+LC+AC++ KQ R  FP  + YRAE PLE
Sbjct: 309 HARLGHVNFHALKLLVDKEMVAGVPAVHHPNQLCQACLVAKQVRQSFPGMANYRAEAPLE 368

Query: 121 LLHADICGPISPRTLAGNKYFLLIVDDSTRWMWLYMLEAKSDGFEAFNKFKLLMENKTEY 180
           LLH D+CGPI+P T AGN+YF+LIVDD +RWMW++++++K     A  KFK L EN    
Sbjct: 369 LLHMDLCGPITPSTFAGNRYFMLIVDDFSRWMWVFVIKSKDQALAASEKFKPLAENTAGR 428

Query: 181 KIRTLRMDRGGEFLSAEFTQFCKKEGIERPLTAPYSPQQNGIIERRNRTVMARTRSLLKS 240
            I+TLR DRG EFLS EF + C   GIER LTAPYSPQQNG++E RNRTVMA  RSLLK 
Sbjct: 429 TIKTLRTDRGSEFLSGEFARVCDAAGIERHLTAPYSPQQNGVVEHRNRTVMAMARSLLKG 488

Query: 241 MHVPAKFWGEALRHTVYLLNCLPTKALGERTPFEAWMGRKPHLAHLRVFGCVAYVKNTTP 300
           M VP + WGEA+RH V+LLN LPTKA+G RT FEAWMG+KPHL HL VFGC A+ K T P
Sbjct: 489 MSVPGRMWGEAVRHAVFLLNRLPTKAMGNRTSFEAWMGKKPHLGHLWVFGCTAHTKVTAP 548

Query: 301 HFKKLDDRSSPMVYFGVEEGCKAHRLYDPGRGKLQISRDVLFQENLEWAWNEVVSDGKEI 360
           H  KLDDRS+P VY GVEEG KAHRL+DP R ++ +SRDV+F EN  W W+    +    
Sbjct: 549 HLMKLDDRSNPFVYLGVEEGSKAHRLFDPRRRQIIVSRDVVFDENTPWQWSAAAGEVTS- 608

Query: 361 TEFQVMDQFYSDEFENL-------------EDAETWVENAFPHAT---------EIPAIG 420
           TEF+V +   +++  ++             ++ E   +   P A+           P +G
Sbjct: 609 TEFEVEEPVGAEQAASVPWYRAPPAGRRAGKEPEVAEQRGTPPASPARFSPTLPSTPTLG 668

Query: 421 ETSS----------SPPSTNTPVRLRSLSDIYANTEEV 426
            +S+          +P S + PVR RSL +I      V
Sbjct: 669 SSSTHSAEVQASPRTPGSDDGPVRYRSLVEIMLEAPRV 705

The following BLAST results are available for this feature:

BLAST of CSPI03G25080 vs. Swiss-Prot


Match Name	E-value	Identity	Description
POLX_TOBAC	1.2e-60	35.29	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
COPIA_DROME	6.0e-52	34.20	Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3	[more]
YP41B_YEAST	5.7e-18	24.19	Transposon Ty4-P Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
YH41B_YEAST	5.7e-18	24.19	Transposon Ty4-H Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
YJ41B_YEAST	1.4e-16	23.89	Transposon Ty4-J Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]

BLAST of CSPI03G25080 vs. TrEMBL


Match Name	E-value	Identity	Description
Q0J8A6_ORYSJ	4.4e-134	60.00	Os08g0125300 protein OS=Oryza sativa subsp. japonica GN=Os08g0125300 PE=2 SV=1	[more]
B8BDZ6_ORYSI	4.4e-134	60.00	Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_30754 PE=4...	[more]
Q338J6_ORYSJ	2.8e-128	53.36	Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica ...	[more]
Q84SW8_ORYSJ	4.7e-128	54.26	Gag-pol polyprotein OS=Oryza sativa subsp. japonica GN=LOC_Os03g47410 PE=4 SV=1	[more]
Q7XMW2_ORYSJ	4.4e-126	50.22	OSJNBb0040D15.12 protein OS=Oryza sativa subsp. japonica GN=OSJNBb0040D15.12 PE=...	[more]

BLAST of CSPI03G25080 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI03G25080 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|113622864\|dbj\|BAF22809.1\|	6.3e-134	60.00	Os08g0125300 [Oryza sativa Japonica Group]	[more]
gi\|218201855\|gb\|EEC84282.1\|	6.3e-134	60.00	hypothetical protein OsI_30754 [Oryza sativa Indica Group]	[more]
gi\|110289052\|gb\|ABB47537.2\|	4.0e-128	53.36	retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group]	[more]
gi\|29150404\|gb\|AAO72413.1\|	6.8e-128	54.26	gag-pol polyprotein [Oryza sativa Japonica Group]	[more]
gi\|38345658\|emb\|CAE04422.2\|	6.3e-126	50.22	OSJNBb0040D15.12 [Oryza sativa Japonica Group]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001584	Integrase_cat-core
IPR012337	RNaseH-like_sf
IPR025724	GAG-pre-integrase_dom

Vocabulary: **Biological Process**
Term	Definition
GO:0015074	DNA integration

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006310	DNA recombination
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G25080.1	CSPI03G25080.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001584	Integrase, catalytic core	PFAM	PF00665	rve	coord: 115..232 score: 6.0
IPR001584	Integrase, catalytic core	PROFILE	PS50994	INTEGRASE	coord: 113..279 score: 26
IPR012337	Ribonuclease H-like domain	GENE3D	G3DSA:3.30.420.10		coord: 117..283 score: 7.5
IPR012337	Ribonuclease H-like domain	unknown	SSF53098	Ribonuclease H-like	coord: 116..288 score: 8.47
IPR025724	GAG-pre-integrase domain	PFAM	PF13976	gag_pre-integrs	coord: 34..101 score: 4.4
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 1..425 score: 9.8E
None	No IPR available	PANTHER	PTHR11439:SF127	SUBFAMILY NOT NAMED	coord: 1..425 score: 9.8E

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI03G25080	Melon (DHL92) v3.6.1	cpimedB197
CSPI03G25080	Cucumber (Gy14) v2	cgybcpiB110
CSPI03G25080	Wax gourd	cpiwgoB298
CSPI03G25080	Cucumber (Chinese Long) v3	cpicucB144
CSPI03G25080	Cucumber (Gy14) v1	cgycpiB451
CSPI03G25080	Cucumber (Chinese Long) v2	cpicuB120
CSPI03G25080	Melon (DHL92) v3.5.1	cpimeB206
CSPI03G25080	Watermelon (97103) v1	cpiwmB229
CSPI03G25080	Bottle gourd (USVL1VR-Ls)	cpilsiB230