CSPI03G25000 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI03G25000
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionAuxin-responsive protein
LocationChr3 : 22203104 .. 22204215 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTGTGGAACTCCGGATGGTTCCAGTTATTGTGCTGGTGCTGGTGCTGATGCTGATGCTGGTAGGGGTGCTGGTGAGGTGGCGGGGGCGGGGGCGGAAGAAGGGAATGGGAATGAATGTGCAGTTTGTTTGTCAGCGTTTGAGGATGGTGAAGAGGTTAAGAAATTGCCGAGATGTACACATACGTTTCATGCTTCTTGTATAGATATGTGGCTTTATTCTCACTCCGATTGCCCACTCTGCCGTGCTCCGGTGGCGGTGGCAGTGGCGGGGATCAGACCTCTCTTAAAGCTTCTGGCAAGAGGGGGTTCTCTGAAACTGTTGATCTCAAACTTAACCTTCAGAGCAAGGACGGTGGAGGAGGTGTCGGTGTCGGTGTCGGGGTGGATCTCAATGAGAATATTAAGAATGTTTCGACGAACGTGGATGGTGAGAAGAGCCTCTGCTCCAAGGATCCTGCCAAGCCACCCGCCAAGTAAATTTCTTCCTCCAAACTGAACTAAATTCAATTTAGGGTTTATTTAGTTGTAACTCATGGCTTTATATCGTGGGATATATCTCAGAACTAATTAACATGTCCCTTAATATGGTCTCTTTTGAGTTCACCAATCATCATAGAATTGGGGTGGACAAAAGGGGGCCCGGGATGGTGATTGGGGTATTGAACATAGGGATCAAACTGGTGATTGAAATTGGGTCGTCGGTCGTCGGAAGGCCACGACGGTGCGGAGGAAGAAGGGTGGTGCCTCTCCAGTTTTGCAGAAAAGGAATGGAACAAGAAGAAGAAGAAGAGAAAGGAGGGGGCCTGAGAATGATCAGGCGATTGAGGATGGAAGAGGAAGAGGAAGAGGAAGAGGAAGGAGGGAGATGAAAGAGAGATGAGCACTGAAAGTTGGGTGGGAGTTCCCGCACAGGATCACCATCTCGAAAAGACCCTTTATCCGTCTTCTCTTCTCTTCACTTTGTTTTTCTTTTCTTTTCTTTTCTTTTTAACAATTGTATATTCAAAATCAAATGAGGTTTATAAGCTTAATTATACATTGATTTCATCATCTTATATAAATTATACTTTCTAACTCTTTCTTCCTTATTTCTAACCTTAATACCCCG

mRNA sequence

ATGATTGTGGAACTCCGGATGGTTCCAGTTATTGTGCTGGTGCTGGTGCTGATGCTGATGCTGGTAGGGGTGCTGGTGAGGTGGCGGGGGCGGGGGCGGAAGAAGGGAATGGGAATGAATGTGCAGTTTGTTTGTCAGCGTTTGAGGATGGTGAAGAGATATGTGGCTTTATTCTCACTCCGATTGCCCACTCTGCCGTGCTCCGGTGGCGGTGGCAGTGGCGGGGATCAGACCTCTCTTAAAGCTTCTGGCAAGAGGGGGTTCTCTGAAACTGTTGATCTCAAACTTAACCTTCAGAGCAAGGACGGTGGAGGAGGTGTCGGTGTCGGTGTCGGGGTGGATCTCAATGAGAATATTAAGAATGTTTCGACGAACGTGGATGGTGAGAAGAGCCTCTGCTCCAAGGATCCTGCCAAGCCACCCGCCAAAATTGGGGTGGACAAAAGGGGGCCCGGGATGGTGATTGGGGTATTGAACATAGGGATCAAACTGGTGATTGAAATTGGGTCGTCGGTCGTCGGAAGGCCACGACGGTGCGGAGGAAGAAGGGTGGTGCCTCTCCAGTTTTGCAGAAAAGGAATGGAACAAGAAGAAGAAGAAGAGAAAGGAGGGGGCCTGAGAATGATCAGGCGATTGAGGATGGAAGAGGAAGAGGAAGAGGAAGAGGAAGGAGGGAGATGA

Coding sequence (CDS)

ATGATTGTGGAACTCCGGATGGTTCCAGTTATTGTGCTGGTGCTGGTGCTGATGCTGATGCTGGTAGGGGTGCTGGTGAGGTGGCGGGGGCGGGGGCGGAAGAAGGGAATGGGAATGAATGTGCAGTTTGTTTGTCAGCGTTTGAGGATGGTGAAGAGATATGTGGCTTTATTCTCACTCCGATTGCCCACTCTGCCGTGCTCCGGTGGCGGTGGCAGTGGCGGGGATCAGACCTCTCTTAAAGCTTCTGGCAAGAGGGGGTTCTCTGAAACTGTTGATCTCAAACTTAACCTTCAGAGCAAGGACGGTGGAGGAGGTGTCGGTGTCGGTGTCGGGGTGGATCTCAATGAGAATATTAAGAATGTTTCGACGAACGTGGATGGTGAGAAGAGCCTCTGCTCCAAGGATCCTGCCAAGCCACCCGCCAAAATTGGGGTGGACAAAAGGGGGCCCGGGATGGTGATTGGGGTATTGAACATAGGGATCAAACTGGTGATTGAAATTGGGTCGTCGGTCGTCGGAAGGCCACGACGGTGCGGAGGAAGAAGGGTGGTGCCTCTCCAGTTTTGCAGAAAAGGAATGGAACAAGAAGAAGAAGAAGAGAAAGGAGGGGGCCTGAGAATGATCAGGCGATTGAGGATGGAAGAGGAAGAGGAAGAGGAAGAGGAAGGAGGGAGATGA
Homology
[Close]
BLAST of CSPI03G25000 vs. TrEMBL
Match: A0A0A0LDH3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G535640 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 3.6e-34
Identity = 82/83 (98.80%), Postives = 82/83 (98.80%), Query Frame = 1 

Query: 144 IGVDKRGPGMVIGVLNIGIKLVIEIGSSVVGRPRRCGGRRVVPLQFCRKGMEQEEEEEKG 203
           IGVDKRGPGMVIGVLNIGIKLVIEIGSSVVGRPRRCGGRRVVPLQFCRKGMEQ EEEEKG
Sbjct: 31  IGVDKRGPGMVIGVLNIGIKLVIEIGSSVVGRPRRCGGRRVVPLQFCRKGMEQ-EEEEKG 90

Query: 204 GGLRMIRRLRMEEEEEEEEEGGR 227
           GGLRMIRRLRMEEEEEEEEEGGR
Sbjct: 91  GGLRMIRRLRMEEEEEEEEEGGR 112

[Close]
BLAST of CSPI03G25000 vs. TrEMBL
Match: A0A0A0LIL5_CUCSA (Auxin-responsive protein OS=Cucumis sativus GN=Csa_2G200420 PE=3 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 6.7e-33
Identity = 76/78 (97.44%), Postives = 76/78 (97.44%), Query Frame = 1 

Query: 69  GGGGSGGDQTSLKASGKRGFSETVDLKLNLQSKDGGGGVGVGVGVDLNENIKNVSTNVDG 128
           GGGGSGGDQTSLKASGKRGFSETVDLKLNLQSKDGGGGVGVGVGVDLNENIKNVSTNVDG
Sbjct: 27  GGGGSGGDQTSLKASGKRGFSETVDLKLNLQSKDGGGGVGVGVGVDLNENIKNVSTNVDG 86

Query: 129 EKSLCSKDPAKPPAKIGV 147
           EKSLCSKDPAKPPAK  V
Sbjct: 87  EKSLCSKDPAKPPAKAQV 104

[Close]
BLAST of CSPI03G25000 vs. TrEMBL
Match: A0A061END6_THECC (Auxin-responsive protein OS=Theobroma cacao GN=TCM_020774 PE=3 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 2.5e-11
Identity = 49/90 (54.44%), Postives = 58/90 (64.44%), Query Frame = 1 

Query: 60  LRLPTLPCSGGGGSGGDQTSLKASGKRGFSETVDLKLNLQSKDGGGGVGVGVGVDLNENI 119
           L LP     GGGG G +  + K +GKRGFSETVDLKLNLQSK+         G+DLN+NI
Sbjct: 26  LGLPGGGGGGGGGGGNEVETPKTTGKRGFSETVDLKLNLQSKE--------TGMDLNKNI 85

Query: 120 KNVSTNVDGEKSL---CSKDPAKPPAKIGV 147
           +N S     EK+L   C+KDPAKPPAK  V
Sbjct: 86  ENGSK----EKTLLPACTKDPAKPPAKAQV 103

[Close]
BLAST of CSPI03G25000 vs. TrEMBL
Match: F6HDY1_VITVI (Auxin-responsive protein OS=Vitis vinifera GN=VIT_05s0020g04690 PE=3 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 9.4e-11
Identity = 47/78 (60.26%), Postives = 53/78 (67.95%), Query Frame = 1 

Query: 71  GGSGGDQTSLKASGKRGFSETVDLKLNLQSKDGGGGVGVGVGVDLNENIKNVSTNVDGEK 130
           GG GG+  +LKASGKRGFSETVDLKLNLQSK+          VDLNEN+K        EK
Sbjct: 30  GGGGGEAETLKASGKRGFSETVDLKLNLQSKES--------VVDLNENVKCPPK----EK 89

Query: 131 SL--CSKDPAKPPAKIGV 147
           +L  C+KDPAKPPAK  V
Sbjct: 90  NLLPCTKDPAKPPAKAQV 95

[Close]
BLAST of CSPI03G25000 vs. TrEMBL
Match: K7N4T6_SOYBN (Auxin-induced protein OS=Glycine max PE=3 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.6e-10
Identity = 46/78 (58.97%), Postives = 53/78 (67.95%), Query Frame = 1 

Query: 69  GGGGSGGDQTSLKASGKRGFSETVDLKLNLQSKDGGGGVGVGVGVDLNENIKNVSTNVDG 128
           GGGG GG+  + +A+GKRGFSETVDLKLNL SK+           DLNEN+KNVS     
Sbjct: 32  GGGGGGGEVETPRATGKRGFSETVDLKLNLHSKE-----------DLNENLKNVSK---- 91

Query: 129 EKSLCSKDPAKPPAKIGV 147
           EK+L  KDPAKPPAK  V
Sbjct: 92  EKTLL-KDPAKPPAKAQV 93

[Close]
BLAST of CSPI03G25000 vs. TAIR10
Match: AT1G04250.1 (AT1G04250.1 AUX/IAA transcriptional regulator family protein)

HSP 1 Score: 51.6 bits (122), Expect = 7.4e-07
Identity = 34/76 (44.74%), Postives = 38/76 (50.00%), Query Frame = 1 

Query: 71  GGSGGDQTSLKASGKRGFSETVDLKLNLQSKDGGGGVGVGVGVDLNENIKNVSTNVDGEK 130
           G  GGD  +     KRGFSETVDLKLNL ++                   +V T    EK
Sbjct: 17  GLPGGDTVAPVTGNKRGFSETVDLKLNLNNEPAN---------KEGSTTHDVVTFDSKEK 76

Query: 131 SLCSKDPAKPPAKIGV 147
           S C KDPAKPPAK  V
Sbjct: 77  SACPKDPAKPPAKAQV 83

[Close]
BLAST of CSPI03G25000 vs. NCBI nr
Match: gi|700202998|gb|KGN58131.1| (hypothetical protein Csa_3G535640 [Cucumis sativus])

HSP 1 Score: 153.3 bits (386), Expect = 5.1e-34
Identity = 82/83 (98.80%), Postives = 82/83 (98.80%), Query Frame = 1 

Query: 144 IGVDKRGPGMVIGVLNIGIKLVIEIGSSVVGRPRRCGGRRVVPLQFCRKGMEQEEEEEKG 203
           IGVDKRGPGMVIGVLNIGIKLVIEIGSSVVGRPRRCGGRRVVPLQFCRKGMEQ EEEEKG
Sbjct: 31  IGVDKRGPGMVIGVLNIGIKLVIEIGSSVVGRPRRCGGRRVVPLQFCRKGMEQ-EEEEKG 90

Query: 204 GGLRMIRRLRMEEEEEEEEEGGR 227
           GGLRMIRRLRMEEEEEEEEEGGR
Sbjct: 91  GGLRMIRRLRMEEEEEEEEEGGR 112

[Close]
BLAST of CSPI03G25000 vs. NCBI nr
Match: gi|778668893|ref|XP_011649168.1| (PREDICTED: auxin-responsive protein IAA14 [Cucumis sativus])

HSP 1 Score: 149.1 bits (375), Expect = 9.6e-33
Identity = 76/78 (97.44%), Postives = 76/78 (97.44%), Query Frame = 1 

Query: 69  GGGGSGGDQTSLKASGKRGFSETVDLKLNLQSKDGGGGVGVGVGVDLNENIKNVSTNVDG 128
           GGGGSGGDQTSLKASGKRGFSETVDLKLNLQSKDGGGGVGVGVGVDLNENIKNVSTNVDG
Sbjct: 27  GGGGSGGDQTSLKASGKRGFSETVDLKLNLQSKDGGGGVGVGVGVDLNENIKNVSTNVDG 86

Query: 129 EKSLCSKDPAKPPAKIGV 147
           EKSLCSKDPAKPPAK  V
Sbjct: 87  EKSLCSKDPAKPPAKAQV 104

[Close]
BLAST of CSPI03G25000 vs. NCBI nr
Match: gi|659130454|ref|XP_008465181.1| (PREDICTED: auxin-responsive protein IAA14-like [Cucumis melo])

HSP 1 Score: 143.3 bits (360), Expect = 5.3e-31
Identity = 72/78 (92.31%), Postives = 74/78 (94.87%), Query Frame = 1 

Query: 69  GGGGSGGDQTSLKASGKRGFSETVDLKLNLQSKDGGGGVGVGVGVDLNENIKNVSTNVDG 128
           GGGG GGDQTSLK+SGKRGFSETVDLKLNLQSKDGGGG GVGVGVDLNEN+KNVSTNVDG
Sbjct: 27  GGGGGGGDQTSLKSSGKRGFSETVDLKLNLQSKDGGGGGGVGVGVDLNENVKNVSTNVDG 86

Query: 129 EKSLCSKDPAKPPAKIGV 147
           EKSLCSKDPAKPPAK  V
Sbjct: 87  EKSLCSKDPAKPPAKAQV 104

[Close]
BLAST of CSPI03G25000 vs. NCBI nr
Match: gi|590658810|ref|XP_007034956.1| (Indole-3-acetic acid 7 isoform 1 [Theobroma cacao])

HSP 1 Score: 77.4 bits (189), Expect = 3.6e-11
Identity = 49/90 (54.44%), Postives = 58/90 (64.44%), Query Frame = 1 

Query: 60  LRLPTLPCSGGGGSGGDQTSLKASGKRGFSETVDLKLNLQSKDGGGGVGVGVGVDLNENI 119
           L LP     GGGG G +  + K +GKRGFSETVDLKLNLQSK+         G+DLN+NI
Sbjct: 26  LGLPGGGGGGGGGGGNEVETPKTTGKRGFSETVDLKLNLQSKE--------TGMDLNKNI 85

Query: 120 KNVSTNVDGEKSL---CSKDPAKPPAKIGV 147
           +N S     EK+L   C+KDPAKPPAK  V
Sbjct: 86  ENGSK----EKTLLPACTKDPAKPPAKAQV 103

[Close]
BLAST of CSPI03G25000 vs. NCBI nr
Match: gi|297737156|emb|CBI26357.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 75.5 bits (184), Expect = 1.4e-10
Identity = 47/78 (60.26%), Postives = 53/78 (67.95%), Query Frame = 1 

Query: 71  GGSGGDQTSLKASGKRGFSETVDLKLNLQSKDGGGGVGVGVGVDLNENIKNVSTNVDGEK 130
           GG GG+  +LKASGKRGFSETVDLKLNLQSK+          VDLNEN+K        EK
Sbjct: 24  GGGGGEAETLKASGKRGFSETVDLKLNLQSKES--------VVDLNENVKCPPK----EK 83

Query: 131 SL--CSKDPAKPPAKIGV 147
           +L  C+KDPAKPPAK  V
Sbjct: 84  NLLPCTKDPAKPPAKAQV 89

The following BLAST results are available for this feature:
BLAST of CSPI03G25000 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI03G25000 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LDH3_CUCSA3.6e-3498.80Uncharacterized protein OS=Cucumis sativus GN=Csa_3G535640 PE=4 SV=1[more]
A0A0A0LIL5_CUCSA6.7e-3397.44Auxin-responsive protein OS=Cucumis sativus GN=Csa_2G200420 PE=3 SV=1[more]
A0A061END6_THECC2.5e-1154.44Auxin-responsive protein OS=Theobroma cacao GN=TCM_020774 PE=3 SV=1[more]
F6HDY1_VITVI9.4e-1160.26Auxin-responsive protein OS=Vitis vinifera GN=VIT_05s0020g04690 PE=3 SV=1[more]
K7N4T6_SOYBN1.6e-1058.97Auxin-induced protein OS=Glycine max PE=3 SV=1[more]
BLAST of CSPI03G25000 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G04250.17.4e-0744.74 AUX/IAA transcriptional regulator family protein[more]
BLAST of CSPI03G25000 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202998|gb|KGN58131.1|5.1e-3498.80hypothetical protein Csa_3G535640 [Cucumis sativus][more]
gi|778668893|ref|XP_011649168.1|9.6e-3397.44PREDICTED: auxin-responsive protein IAA14 [Cucumis sativus][more]
gi|659130454|ref|XP_008465181.1|5.3e-3192.31PREDICTED: auxin-responsive protein IAA14-like [Cucumis melo][more]
gi|590658810|ref|XP_007034956.1|3.6e-1154.44Indole-3-acetic acid 7 isoform 1 [Theobroma cacao][more]
gi|297737156|emb|CBI26357.3|1.4e-1060.26unnamed protein product [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR003311AUX_IAA
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009734 auxin-activated signaling pathway
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G25000.1CSPI03G25000.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003311AUX/IAA proteinPANTHERPTHR31734FAMILY NOT NAMEDcoord: 68..143
score: 9.9
NoneNo IPR availablePANTHERPTHR31734:SF30AUXIN-RESPONSIVE PROTEIN IAA14-RELATEDcoord: 68..143
score: 9.9

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI03G25000CsaV3_3G026580Cucumber (Chinese Long) v3cpicucB144
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI03G25000Cucumber (Gy14) v1cgycpiB451
CSPI03G25000Cucurbita maxima (Rimu)cmacpiB260
CSPI03G25000Cucurbita maxima (Rimu)cmacpiB454
CSPI03G25000Cucurbita moschata (Rifu)cmocpiB248
CSPI03G25000Cucurbita moschata (Rifu)cmocpiB442
CSPI03G25000Cucumber (Chinese Long) v2cpicuB120
CSPI03G25000Melon (DHL92) v3.5.1cpimeB206
CSPI03G25000Watermelon (Charleston Gray)cpiwcgB198
CSPI03G25000Watermelon (97103) v1cpiwmB205
CSPI03G25000Cucurbita pepo (Zucchini)cpecpiB565
CSPI03G25000Bottle gourd (USVL1VR-Ls)cpilsiB187
CSPI03G25000Melon (DHL92) v3.6.1cpimedB197
CSPI03G25000Cucumber (Gy14) v2cgybcpiB110
CSPI03G25000Silver-seed gourdcarcpiB0796
CSPI03G25000Silver-seed gourdcarcpiB0853
CSPI03G25000Watermelon (97103) v2cpiwmbB192
CSPI03G25000Wax gourdcpiwgoB248