CSPI02G04830 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI02G04830
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr2 : 3472897 .. 3473271 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTAACTGGTCGATTACAGAAACACTAAATGGAAGCAATTTCTTGCATCTAAGCTTGGATGCTGAAGAAATGTTAACTGAAGCGGGTTTTCTTCTTAACTATTTTCCAGAACTGTATGGGGAAGCAGAAATCGACATGTACGATATGGTTTCGCACAAATATTTTAAAGCAATCATGAGTAGGCTATCCAATGCTAACCAATTTGTTATTAGTTGGGGTCAAGACTTCGTCAACAAAATAAACTATACGAATGGAGATGAAATTTTGTTAGAACCTCGGGCCAAAATCCTATGTTTTAAGATTAACAAAGTTTCGGCTCTTAGAACTTATCCAGAAATGTCTAGTCAATATCGTTTCTATGGTAATTGTTAG

mRNA sequence

ATGGCTAACTGGTCGATTACAGAAACACTAAATGGAAGCAATTTCTTGCATCTAAGCTTGGATGCTGAAGAAATGTTAACTGAAGCGGGTTTTCTTCTTAACTATTTTCCAGAACTGTATGGGGAAGCAGAAATCGACATGTACGATATGGTTTCGCACAAATATTTTAAAGCAATCATGAGTAGGCTATCCAATGCTAACCAATTTGTTATTAGTTGGGGTCAAGACTTCGTCAACAAAATAAACTATACGAATGGAGATGAAATTTTGTTAGAACCTCGGGCCAAAATCCTATGTTTTAAGATTAACAAAGTTTCGGCTCTTAGAACTTATCCAGAAATGTCTAGTCAATATCGTTTCTATGGTAATTGTTAG

Coding sequence (CDS)

ATGGCTAACTGGTCGATTACAGAAACACTAAATGGAAGCAATTTCTTGCATCTAAGCTTGGATGCTGAAGAAATGTTAACTGAAGCGGGTTTTCTTCTTAACTATTTTCCAGAACTGTATGGGGAAGCAGAAATCGACATGTACGATATGGTTTCGCACAAATATTTTAAAGCAATCATGAGTAGGCTATCCAATGCTAACCAATTTGTTATTAGTTGGGGTCAAGACTTCGTCAACAAAATAAACTATACGAATGGAGATGAAATTTTGTTAGAACCTCGGGCCAAAATCCTATGTTTTAAGATTAACAAAGTTTCGGCTCTTAGAACTTATCCAGAAATGTCTAGTCAATATCGTTTCTATGGTAATTGTTAG
Homology
[Close]
BLAST of CSPI02G04830 vs. TrEMBL
Match: A0A0A0LJ50_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G270130 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 8.8e-35
Identity = 79/120 (65.83%), Postives = 92/120 (76.67%), Query Frame = 1 

Query: 4   WSITETLNGSNFLHLSLDAEEMLTEAGFLLNYFPELYGEAEIDMYDMVSHKYFKAIMSRL 63
           WSITETL+GS  L L LDA EML E+ FLLNYFPE  G+A+I M+D+VS K FKA M R 
Sbjct: 8   WSITETLDGSKELGLKLDAAEMLFESSFLLNYFPEQSGKAKITMFDVVSEKSFKATMERK 67

Query: 64  SNANQFVISWGQDFVNKINYTNGDEILL--EPRAKILCFKINKVSALRTYPEMSSQYRFY 122
           S +NQF+I+W +DFV  INY NGDEILL  EP+ K LCF+I K SALRTYP+MS QYR Y
Sbjct: 68  SASNQFLITWKKDFVKNINYKNGDEILLYWEPQIKSLCFEIVKCSALRTYPQMSGQYRSY 127

[Close]
BLAST of CSPI02G04830 vs. TrEMBL
Match: A0A0A0LD04_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G401960 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 2.8e-33
Identity = 76/120 (63.33%), Postives = 91/120 (75.83%), Query Frame = 1 

Query: 4   WSITETLNGSNFLHLSLDAEEMLTEAGFLLNYFPELYGEAEIDMYDMVSHKYFKAIMSRL 63
           WSITETL+GS  L L LDA EML E+ FLLNYFPE  G+A+I M+D+VS K FKA M R 
Sbjct: 8   WSITETLDGSKELGLKLDAAEMLFESSFLLNYFPEQSGKAKITMFDVVSEKSFKATMERK 67

Query: 64  SNANQFVISWGQDFVNKINYTNGDEILL--EPRAKILCFKINKVSALRTYPEMSSQYRFY 122
           S +NQF+I+W +DFV  INY +GDEILL  EP+ K LCF+I + SALRTYP+MS QY  Y
Sbjct: 68  SASNQFLITWKKDFVKNINYKSGDEILLYWEPQIKSLCFEIVRCSALRTYPQMSGQYHSY 127

[Close]
BLAST of CSPI02G04830 vs. NCBI nr
Match: gi|700206801|gb|KGN61920.1| (hypothetical protein Csa_2G270130 [Cucumis sativus])

HSP 1 Score: 154.5 bits (389), Expect = 1.3e-34
Identity = 79/120 (65.83%), Postives = 92/120 (76.67%), Query Frame = 1 

Query: 4   WSITETLNGSNFLHLSLDAEEMLTEAGFLLNYFPELYGEAEIDMYDMVSHKYFKAIMSRL 63
           WSITETL+GS  L L LDA EML E+ FLLNYFPE  G+A+I M+D+VS K FKA M R 
Sbjct: 8   WSITETLDGSKELGLKLDAAEMLFESSFLLNYFPEQSGKAKITMFDVVSEKSFKATMERK 67

Query: 64  SNANQFVISWGQDFVNKINYTNGDEILL--EPRAKILCFKINKVSALRTYPEMSSQYRFY 122
           S +NQF+I+W +DFV  INY NGDEILL  EP+ K LCF+I K SALRTYP+MS QYR Y
Sbjct: 68  SASNQFLITWKKDFVKNINYKNGDEILLYWEPQIKSLCFEIVKCSALRTYPQMSGQYRSY 127

[Close]
BLAST of CSPI02G04830 vs. NCBI nr
Match: gi|700202808|gb|KGN57941.1| (hypothetical protein Csa_3G401960 [Cucumis sativus])

HSP 1 Score: 149.4 bits (376), Expect = 4.1e-33
Identity = 76/120 (63.33%), Postives = 91/120 (75.83%), Query Frame = 1 

Query: 4   WSITETLNGSNFLHLSLDAEEMLTEAGFLLNYFPELYGEAEIDMYDMVSHKYFKAIMSRL 63
           WSITETL+GS  L L LDA EML E+ FLLNYFPE  G+A+I M+D+VS K FKA M R 
Sbjct: 8   WSITETLDGSKELGLKLDAAEMLFESSFLLNYFPEQSGKAKITMFDVVSEKSFKATMERK 67

Query: 64  SNANQFVISWGQDFVNKINYTNGDEILL--EPRAKILCFKINKVSALRTYPEMSSQYRFY 122
           S +NQF+I+W +DFV  INY +GDEILL  EP+ K LCF+I + SALRTYP+MS QY  Y
Sbjct: 68  SASNQFLITWKKDFVKNINYKSGDEILLYWEPQIKSLCFEIVRCSALRTYPQMSGQYHSY 127

The following BLAST results are available for this feature:
BLAST of CSPI02G04830 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI02G04830 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LJ50_CUCSA8.8e-3565.83Uncharacterized protein OS=Cucumis sativus GN=Csa_2G270130 PE=4 SV=1[more]
A0A0A0LD04_CUCSA2.8e-3363.33Uncharacterized protein OS=Cucumis sativus GN=Csa_3G401960 PE=4 SV=1[more]
BLAST of CSPI02G04830 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI02G04830 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700206801|gb|KGN61920.1|1.3e-3465.83hypothetical protein Csa_2G270130 [Cucumis sativus][more]
gi|700202808|gb|KGN57941.1|4.1e-3363.33hypothetical protein Csa_3G401960 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI02G04830.1CSPI02G04830.1mRNA