CSPI01G23590 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI01G23590
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr1 : 19094977 .. 19095526 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTCTGAAATGGAATCACATATCACATGGTTCATGGTCCGCACTTGATTTGGGCATTTCTGTCGTTGATTGAAGTTAGAAGTAGAACTCTGGAGATCCATAACACAATCCCATCAATGGCAATGACAATGACGCACACCCTTTGCCAAGTTGATCAGTGTCGTCACATGCACACAGCTCAGTTGTTGACAGCACAGCAGCGAGCAGCCCAACCAAACGACAGTGCACTTACCTCAACCAACCAAACGACAGCCCAACATGTTAATTTACTCTTTCACACCAGACCCACCTTCATAGCCACCCCATCCTCAAGCGCCTTAATTCAACAAGTGGTGAACCATTAACCTAACTTACGAAACAAACGGTATATGTGATTCGGTAGGTATGGTTACAATTACCACTGCTGGGTGATTCAGCTTCCATTGTTTAGTTTCCTTCAATAAACAAATGGTTCGACTACAATTTTACCCAAAAACTGAGGTAAATCAAACAACCTACAACCCTATGGTTAAGAAACTCAGACCACCCATGCGACAGTATTTGATAACAAAA

mRNA sequence

ATGGTTCATGGTCCGCACTTGATTTGGGCATTTCTGTCGTTGATTGAAGTTAGAAGTAGAACTCTGGAGATCCATAACACAATCCCATCAATGGCAATGACAATGACGCACACCCTTTGCCAAGTTGATCAGTGTCGTCACATGCACACAGCTCAGTTGTTGACAGCACAGCAGCGAGCAGCCCAACCAAACGACAGTGCACTTACCTCAACCAACCAAACGACAGCCCAACATGTTAATTTACTCTTTCACACCAGACCCACCTTCATAGCCACCCCATCCTCAAGCGCCTTAATTCAACAAGTGGTGAACCATTAA

Coding sequence (CDS)

ATGGTTCATGGTCCGCACTTGATTTGGGCATTTCTGTCGTTGATTGAAGTTAGAAGTAGAACTCTGGAGATCCATAACACAATCCCATCAATGGCAATGACAATGACGCACACCCTTTGCCAAGTTGATCAGTGTCGTCACATGCACACAGCTCAGTTGTTGACAGCACAGCAGCGAGCAGCCCAACCAAACGACAGTGCACTTACCTCAACCAACCAAACGACAGCCCAACATGTTAATTTACTCTTTCACACCAGACCCACCTTCATAGCCACCCCATCCTCAAGCGCCTTAATTCAACAAGTGGTGAACCATTAA
Homology
[Close]
BLAST of CSPI01G23590 vs. TrEMBL
Match: A0A0A0LVG5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G527940 PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 2.5e-46
Identity = 101/105 (96.19%), Postives = 101/105 (96.19%), Query Frame = 1 

Query: 1   MVHGPHLIWAFLSLIEVRSRTLEIHNTIPSMAMTMTHTLCQVDQCRHMHTAQLLTAQQRA 60
           MVHGPHLIWAFLSLIEV   TLEIHNTIPSMAMTMTHTLCQVDQC HMHTAQLLTAQQRA
Sbjct: 1   MVHGPHLIWAFLSLIEV---TLEIHNTIPSMAMTMTHTLCQVDQC-HMHTAQLLTAQQRA 60

Query: 61  AQPNDSALTSTNQTTAQHVNLLFHTRPTFIATPSSSALIQQVVNH 106
           AQPNDSALTSTNQTTAQHVNLLFHTRPTFIATPSSSALIQQVVNH
Sbjct: 61  AQPNDSALTSTNQTTAQHVNLLFHTRPTFIATPSSSALIQQVVNH 101

[Close]
BLAST of CSPI01G23590 vs. NCBI nr
Match: gi|700210682|gb|KGN65778.1| (hypothetical protein Csa_1G527940 [Cucumis sativus])

HSP 1 Score: 192.6 bits (488), Expect = 3.5e-46
Identity = 101/105 (96.19%), Postives = 101/105 (96.19%), Query Frame = 1 

Query: 1   MVHGPHLIWAFLSLIEVRSRTLEIHNTIPSMAMTMTHTLCQVDQCRHMHTAQLLTAQQRA 60
           MVHGPHLIWAFLSLIEV   TLEIHNTIPSMAMTMTHTLCQVDQC HMHTAQLLTAQQRA
Sbjct: 1   MVHGPHLIWAFLSLIEV---TLEIHNTIPSMAMTMTHTLCQVDQC-HMHTAQLLTAQQRA 60

Query: 61  AQPNDSALTSTNQTTAQHVNLLFHTRPTFIATPSSSALIQQVVNH 106
           AQPNDSALTSTNQTTAQHVNLLFHTRPTFIATPSSSALIQQVVNH
Sbjct: 61  AQPNDSALTSTNQTTAQHVNLLFHTRPTFIATPSSSALIQQVVNH 101

The following BLAST results are available for this feature:
BLAST of CSPI01G23590 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI01G23590 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LVG5_CUCSA2.5e-4696.19Uncharacterized protein OS=Cucumis sativus GN=Csa_1G527940 PE=4 SV=1[more]
BLAST of CSPI01G23590 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI01G23590 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700210682|gb|KGN65778.1|3.5e-4696.19hypothetical protein Csa_1G527940 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G23590.1CSPI01G23590.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI01G23590Csa1G527940Cucumber (Chinese Long) v2cpicuB001
CSPI01G23590CsaV3_1G035900Cucumber (Chinese Long) v3cpicucB000
CSPI01G23590Cucsa.146770Cucumber (Gy14) v1cgycpiB214
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI01G23590Wax gourdcpiwgoB048
CSPI01G23590Wild cucumber (PI 183967)cpicpiB019
CSPI01G23590Wild cucumber (PI 183967)cpicpiB040
CSPI01G23590Cucumber (Gy14) v1cgycpiB277
CSPI01G23590Cucurbita maxima (Rimu)cmacpiB220
CSPI01G23590Cucurbita maxima (Rimu)cmacpiB236
CSPI01G23590Cucurbita maxima (Rimu)cmacpiB430
CSPI01G23590Cucurbita maxima (Rimu)cmacpiB824
CSPI01G23590Cucurbita moschata (Rifu)cmocpiB206
CSPI01G23590Cucurbita moschata (Rifu)cmocpiB223
CSPI01G23590Cucurbita moschata (Rifu)cmocpiB420
CSPI01G23590Cucurbita moschata (Rifu)cmocpiB811
CSPI01G23590Cucumber (Chinese Long) v2cpicuB028
CSPI01G23590Melon (DHL92) v3.5.1cpimeB025
CSPI01G23590Melon (DHL92) v3.5.1cpimeB065
CSPI01G23590Watermelon (Charleston Gray)cpiwcgB004
CSPI01G23590Watermelon (Charleston Gray)cpiwcgB050
CSPI01G23590Watermelon (97103) v1cpiwmB004
CSPI01G23590Watermelon (97103) v1cpiwmB023
CSPI01G23590Cucurbita pepo (Zucchini)cpecpiB507
CSPI01G23590Cucurbita pepo (Zucchini)cpecpiB531
CSPI01G23590Cucurbita pepo (Zucchini)cpecpiB537
CSPI01G23590Bottle gourd (USVL1VR-Ls)cpilsiB031
CSPI01G23590Melon (DHL92) v3.6.1cpimedB024
CSPI01G23590Melon (DHL92) v3.6.1cpimedB057
CSPI01G23590Cucumber (Gy14) v2cgybcpiB002
CSPI01G23590Cucumber (Gy14) v2cgybcpiB097
CSPI01G23590Silver-seed gourdcarcpiB0177
CSPI01G23590Silver-seed gourdcarcpiB0415
CSPI01G23590Silver-seed gourdcarcpiB0476
CSPI01G23590Silver-seed gourdcarcpiB1034
CSPI01G23590Cucumber (Chinese Long) v3cpicucB032
CSPI01G23590Cucumber (Chinese Long) v3cpicucB008
CSPI01G23590Watermelon (97103) v2cpiwmbB015
CSPI01G23590Watermelon (97103) v2cpiwmbB044