CSPI01G19310 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI01G19310
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	Chr1 : 14782324 .. 14783642 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGACATATTGTATGTAAATAACTTGCACCTTTCTGTTTTTTCTGATGAGAAGCCTGACGACAAAACTGATAAAGAATGGGAATTATGTCATAGGAAAGTGTGTGGGTTTATGAGGCTATGGGTAGAAGATAACTTTCTAAACCATATTTGTGAAGAAACTCATGCGCGAACTATGTGGAATAAGCTTGAATCGCTATGTGCCTCTAAAACTGGAAATAATAAAATGTTTCTGATTAAACATATGATGGAGTTAAAGTATCAAGATGGAGCGCCTATGTTAGATCACTTGAATACATTTCAAGGTATTTTGAATCAGTTATCTAGAATGAATATCAAGTTTGAGGATGAGATACATGAGTTATCGGTGCTTGGTACATTGCCGGACTCGTGGAAAATATTTAGAACTTCCTTATCGAACTCAGCCCCAAATGGTGTACTAAGTATGGACCTAGTAAAAAGTAGCGTGTTGAACGAGGAGATGAGAAGAAAGTCTCAAAGTTCTTCTTCACAGTCAGATGTTCTGGTTACTGAAAAGAGGGGGAGGAGTAAAAGTAAGAGTCCAAGAGGTAATAACATAAGCAAAAGTAGAAGTGACCGGTTTGCCAATGTTGAGTGTCACTATTGCCATGAAAAGCATATAAAGAAGTATTATTGAAAATTGAAAAGAGACAGTAAAAATCATAAGGGCAAGGAAAAGAAGAATGATGATGATAGTGATGCTGATACAATCATTGTAGCCACTGAAGATTTTTACATCTTGTCTGATGGTGATGTTGTAAATCTTGCCACACAACATAGCATTTGGGTGATTGATAGTGGTGCATCAGTTCATGCTACTTTGAAGAGGGATTTGCATCCTATACTCCTGGTGATTTTGGCAGTGTTAGGATGGGTAATGACAGATCAACAAATACAGTTGGCATCGTTGATGTACACTTGAAGAACAAAAATGGTTTTAGGCTGATTTTGAAAAATGTGAAACATATTCCTGATATTCGCATGAACTTGATTTCCACATGTAAGCTTGATGATGAAGGTTTCTGCAGTACCTTCGACAATGGCATATGGAAGCTTACTAAAGGTTCAATGGTTATAGCAAAGGCACAAAAATTTTCTTCACTGTACTACATGGATGCAAAAATCATGGAGTCTGATATAAATATGGTGAATGATGAAGCAAATGTTGAGCTTTGGCATAAGAGACTTAGCCATATAAGTGAGAAGGGTTTAAAGATTTTAACCAAGAAAAATCATCTTCCTAATTTAAAGAGTACACCTCTAAAACGGTGTCCTCATTGTTTGGCAGGAAAGTAG

mRNA sequence

ATGGAAGACATATTGTATGTAAATAACTTGCACCTTTCTGTTTTTTCTGATGAGAAGCCTGACGACAAAACTGATAAAGAATGGGAATTATGTCATAGGAAAGTGTGTGGGTTTATGAGGCTATGGGTAGAAGATAACTTTCTAAACCATATTTGTGAAGAAACTCATGCGCGAACTATGTGGAATAAGCTTGAATCGCTATGTGCCTCTAAAACTGGAAATAATAAAATGTTTCTGATTAAACATATGATGGAGTTAAAGTATCAAGATGGAGCGCCTATGTTAGATCACTTGAATACATTTCAAGGTATTTTGAATCAGTTATCTAGAATGAATATCAAGTTTGAGGATGAGATACATGAGTTATCGGTGCTTGGTACATTGCCGGACTCGTGGAAAATATTTAGAACTTCCTTATCGAACTCAGCCCCAAATGGTGTACTAAGTATGGACCTAGTAAAAAGTAGCGTGTTGAACGAGGAGATGAGAAGAAAGTCTCAAAGTTCTTCTTCACAGTCAGATGTTCTGGTTACTGAAAAGAGGGGGAGGAGTAAAAGTAAGAGTCCAAGAGACAGTAAAAATCATAAGGGCAAGGAAAAGAAGAATGATGATGATAGTGATGCTGATACAATCATTGTAGCCACTGAAGATTTTTACATCTTGTCTGATGGTGATGTTGTAAATCTTGCCACACAACATAGCATTTGGGTGATTGATAGTGGTGCATCAGTTCATGCTACTTTGAAGAGGGATTTGCATCCTATACTCCTGGTGATTTTGGCAGTGTTAGGATGGAACAAAAATGGTTTTAGGCTGATTTTGAAAAATGTGAAACATATTCCTGATATTCGCATGAACTTGATTTCCACATGTAAGCTTGATGATGAAGGTTTCTGCAGTACCTTCGACAATGGCATATGGAAGCTTACTAAAGGTTCAATGGTTATAGCAAAGGCACAAAAATTTTCTTCACTGTACTACATGGATGCAAAAATCATGGAGTCTGATATAAATATGGTGAATGATGAAGCAAATGTTGAGCTTTGGCATAAGAGACTTAGCCATATAAGTGAGAAGGGTTTAAAGATTTTAACCAAGAAAAATCATCTTCCTAATTTAAAGAGTACACCTCTAAAACGGTGTCCTCATTGTTTGGCAGGAAAGTAG

Coding sequence (CDS)

ATGGAAGACATATTGTATGTAAATAACTTGCACCTTTCTGTTTTTTCTGATGAGAAGCCTGACGACAAAACTGATAAAGAATGGGAATTATGTCATAGGAAAGTGTGTGGGTTTATGAGGCTATGGGTAGAAGATAACTTTCTAAACCATATTTGTGAAGAAACTCATGCGCGAACTATGTGGAATAAGCTTGAATCGCTATGTGCCTCTAAAACTGGAAATAATAAAATGTTTCTGATTAAACATATGATGGAGTTAAAGTATCAAGATGGAGCGCCTATGTTAGATCACTTGAATACATTTCAAGGTATTTTGAATCAGTTATCTAGAATGAATATCAAGTTTGAGGATGAGATACATGAGTTATCGGTGCTTGGTACATTGCCGGACTCGTGGAAAATATTTAGAACTTCCTTATCGAACTCAGCCCCAAATGGTGTACTAAGTATGGACCTAGTAAAAAGTAGCGTGTTGAACGAGGAGATGAGAAGAAAGTCTCAAAGTTCTTCTTCACAGTCAGATGTTCTGGTTACTGAAAAGAGGGGGAGGAGTAAAAGTAAGAGTCCAAGAGACAGTAAAAATCATAAGGGCAAGGAAAAGAAGAATGATGATGATAGTGATGCTGATACAATCATTGTAGCCACTGAAGATTTTTACATCTTGTCTGATGGTGATGTTGTAAATCTTGCCACACAACATAGCATTTGGGTGATTGATAGTGGTGCATCAGTTCATGCTACTTTGAAGAGGGATTTGCATCCTATACTCCTGGTGATTTTGGCAGTGTTAGGATGGAACAAAAATGGTTTTAGGCTGATTTTGAAAAATGTGAAACATATTCCTGATATTCGCATGAACTTGATTTCCACATGTAAGCTTGATGATGAAGGTTTCTGCAGTACCTTCGACAATGGCATATGGAAGCTTACTAAAGGTTCAATGGTTATAGCAAAGGCACAAAAATTTTCTTCACTGTACTACATGGATGCAAAAATCATGGAGTCTGATATAAATATGGTGAATGATGAAGCAAATGTTGAGCTTTGGCATAAGAGACTTAGCCATATAAGTGAGAAGGGTTTAAAGATTTTAACCAAGAAAAATCATCTTCCTAATTTAAAGAGTACACCTCTAAAACGGTGTCCTCATTGTTTGGCAGGAAAGTAG

Homology

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BLAST of CSPI01G19310 vs. Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 1.5e-57
Identity = 151/448 (33.71%), Postives = 231/448 (51.56%), Query Frame = 1


Query: 1   MEDILYVNNLHLSVFSD-EKPDDKTDKEWELCHRKVCGFMRLWVEDNFLNHICEETHART 60
           M D+L    LH  +  D +KPD    ++W     +    +RL + D+ +N+I +E  AR 
Sbjct: 24  MRDLLIQQGLHKVLDVDSKKPDTMKAEDWADLDERAASAIRLHLSDDVVNNIIDEDTARG 83

Query: 61  MWNKLESLCASKTGNNKMFLIKHMMELKYQDGAPMLDHLNTFQGILNQLSRMNIKFEDEI 120
           +W +LESL  SKT  NK++L K +  L   +G   L HLN F G++ QL+ + +K E+E 
Sbjct: 84  IWTRLESLYMSKTLTNKLYLKKQLYALHMSEGTNFLSHLNVFNGLITQLANLGVKIEEED 143

Query: 121 HELSVLGTLPDSWKIFRTSLSNSAPNGVLSMDLVKSSVLNEEMRRKSQSSSSQSDVLVTE 180
             + +L +LP S+    T++ +      L  D+  + +LNE+MR+K +   +Q   L+TE
Sbjct: 144 KAILLLNSLPSSYDNLATTILHGKTTIELK-DVTSALLLNEKMRKKPE---NQGQALITE 203

Query: 181 KRGRSKSKSPRD--SKNHKGKEK------------------------------------K 240
            RGRS  +S  +      +GK K                                    K
Sbjct: 204 GRGRSYQRSSNNYGRSGARGKSKNRSKSRVRNCYNCNQPGHFKRDCPNPRKGKGETSGQK 263

Query: 241 NDDDSDADTIIVATED---FYILSDGDVVNLATQHSIWVIDSGASVHATLKRDL------ 300
           NDD++ A   +V   D    +I  + + ++L+   S WV+D+ AS HAT  RDL      
Sbjct: 264 NDDNTAA---MVQNNDNVVLFINEEEECMHLSGPESEWVVDTAASHHATPVRDLFCRYVA 323

Query: 301 ------------HPILLVILAVLGWNKNGFRLILKNVKHIPDIRMNLISTCKLDDEGFCS 360
                       +  +  I  +      G  L+LK+V+H+PD+RMNLIS   LD +G+ S
Sbjct: 324 GDFGTVKMGNTSYSKIAGIGDICIKTNVGCTLVLKDVRHVPDLRMNLISGIALDRDGYES 383

Query: 361 TFDNGIWKLTKGSMVIAKAQKFSSLYYMDAKIMESDINMVNDEANVELWHKRLSHISEKG 389
            F N  W+LTKGS+VIAK     +LY  +A+I + ++N   DE +V+LWHKR+ H+SEKG
Sbjct: 384 YFANQKWRLTKGSLVIAKGVARGTLYRTNAEICQGELNAAQDEISVDLWHKRMGHMSEKG 443

[Close]

BLAST of CSPI01G19310 vs. Swiss-Prot
Match: M300_ARATH (Uncharacterized mitochondrial protein AtMg00300 OS=Arabidopsis thaliana GN=AtMg00300 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 3.3e-09
Identity = 32/94 (34.04%), Postives = 50/94 (53.19%), Query Frame = 1


Query: 296 EGFCSTFDNGIWKLTKGSMVIAKAQKFSSLYYMDAKIMESDINMVNDEAN-VELWHKRLS 355
           E  CS    G+ K+ KG   I K  +  SLY +   +   + N+     +   LWH RL+
Sbjct: 21  EASCS---EGVLKVLKGCRTILKGNRHDSLYILQGSVETGESNLAETAKDETRLWHSRLA 80

Query: 356 HISEKGLKILTKKNHLPNLKSTPLKRCPHCLAGK 389
           H+S++G+++L KK  L + K + LK C  C+ GK
Sbjct: 81  HMSQRGMELLVKKGFLDSSKVSSLKFCEDCIYGK 111

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BLAST of CSPI01G19310 vs. TrEMBL
Match: A5C9D7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_007304 PE=4 SV=1)

HSP 1 Score: 456.1 bits (1172), Expect = 4.4e-125
Identity = 246/441 (55.78%), Postives = 292/441 (66.21%), Query Frame = 1


Query: 1   MEDILYVNNLHLSVFSDEKPDDKTDKEWELCHRKVCGFMRLWVEDNFLNHICEETHARTM 60
           MED+LYV + +L VF  E+P++KTD EW L HR+VCG++R WV+DN LNH+ EE H R+ 
Sbjct: 1   MEDLLYVKDYYLXVFXSERPENKTDAEWNLLHRQVCGYIRXWVDDNXLNHVSEEKHXRSX 60

Query: 61  WNKLESLCASKTGNNKMFLIKHMMELKYQDGAPMLDHLNTFQGILNQLSRMNIKFEDEIH 120
           WNKLE L A KT NNK+FLIK MM LKYQDG    DHLNTFQGI+NQL+ MNIKFE+E+ 
Sbjct: 61  WNKLEQLYARKTXNNKLFLIKKMMSLKYQDGTXXTDHLNTFQGIINQLAGMNIKFEEEVQ 120

Query: 121 ELSVLGTLPDSWKIFRTSLSNSAPNGVLSMDLVKSSVLNEEMRRKSQSSSSQSDVLVTEK 180
            L +LGTLPDSW+ FRTSLSNSAP+G+++MDLVKS VLNEEMRRKSQ SSSQS+VLV  K
Sbjct: 121 GLWLLGTLPDSWETFRTSLSNSAPDGIMNMDLVKSCVLNEEMRRKSQGSSSQSNVLVIXK 180

Query: 181 RGRSKSKSP-----------------------------------RDSKNHKGKEKKNDDD 240
            GRSKS+ P                                   RD K  K KEKKND+ 
Sbjct: 181 XGRSKSRGPKNRDRSKSKTNKFANVECHYCHLKGHIKKYCRQLKRDMKQGKVKEKKNDNG 240

Query: 241 SDADTIIVATEDFYILSDGDVVNLATQHSIWVIDSGASVHATLKRDLHPILL------VI 300
            + D +     DF I+ D DVVN A Q S WVID GAS+HAT ++D            V 
Sbjct: 241 GEDDQVATTISDFLIVYDSDVVNFACQESXWVIDXGASIHATPQKDFFTSYTSGDFGSVR 300

Query: 301 LAVLGWNK------------NGFRLILKNVKHIPDIRMNLISTCKLDDEGFCSTFDNGIW 360
           +   G  K            NG  L LKNVKHIPDIRMNLIST KLDDEGFC+TF +  W
Sbjct: 301 MGNDGSAKAIGMGDVRLETSNGTMLTLKNVKHIPDIRMNLISTGKLDDEGFCNTFRDSQW 360

Query: 361 KLTKGSMVIAKAQKFSSLYYMDAKIMESDINMVNDEANVELWHKRLSHISEKGLKILTKK 389
           KLT+GSMVIAK  K SSLY M A++++S IN V+D++  ELWH +L H+SEKGL IL KK
Sbjct: 361 KLTRGSMVIAKGNKSSSLYLMQARVIDSSINAVDDDSTFELWHNKLGHMSEKGLMILAKK 420

[Close]

BLAST of CSPI01G19310 vs. TrEMBL
Match: A5BAF2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027081 PE=4 SV=1)

HSP 1 Score: 454.9 bits (1169), Expect = 9.8e-125
Identity = 242/428 (56.54%), Postives = 290/428 (67.76%), Query Frame = 1


Query: 1   MEDILYVNNLHLSVFSDEKPDDKTDKEWELCHRKVCGFMRLWVEDNFLNHICEETHARTM 60
           MED+LY+ + +L VF+ E+P++KTD EW L HR+VCG++R WV+DN LNH+ +E HAR++
Sbjct: 1   MEDLLYMKDYYLPVFASERPENKTDAEWNLLHRQVCGYIRQWVDDNVLNHVSKEKHARSL 60

Query: 61  WNKLESLCASKTGNNKMFLIKHMMELKYQDGAPMLDHLNTFQGILNQLSRMNIKFEDEIH 120
           WNKLE L A KTGNNK+FLIK MM LKYQDG PM DHLNTFQGI+NQL+RMNIKFE+E+ 
Sbjct: 61  WNKLEQLYARKTGNNKLFLIKKMMSLKYQDGTPMTDHLNTFQGIINQLARMNIKFEEEVQ 120

Query: 121 ELSVLGTLPDSWKIFRTSLSNSAPNGVLSMDLVKSSVLNEEMRRKSQSSSSQSDVLVTEK 180
            L +LGTLPDSW+ FRTSLSNSAP               +EMRRKSQ SSSQS+VLVTEK
Sbjct: 121 GLWLLGTLPDSWETFRTSLSNSAP---------------DEMRRKSQGSSSQSNVLVTEK 180

Query: 181 RGRSKSKSP-----------------------------------RDSKNHKGKEKKNDDD 240
           RGRSKSK P                                   RD K  K KEKKND+ 
Sbjct: 181 RGRSKSKGPKNRDRSKSKTNKFANVECHYCHLKGHIKKYCHQLKRDMKQGKVKEKKNDNG 240

Query: 241 SDADTIIVATEDFYILSDGDVVNLATQHSIWVIDSGASVHATLKRDLHPILLVILAV-LG 300
            + D +   T DF I+ D DVVN A   + WVIDSGAS+HATL++D         A+ +G
Sbjct: 241 GEDDQVATTTSDFLIVYDSDVVNFACXETSWVIDSGASIHATLRKDFFTSYTSAKAIGMG 300

Query: 301 ----WNKNGFRLILKNVKHIPDIRMNLISTCKLDDEGFCSTFDNGIWKLTKGSMVIAKAQ 360
                  NG  L LKNVKHIPDIRMNLIST KLDDEGFC+TF +  W LT+GSMVIAK  
Sbjct: 301 DVRLETSNGTMLTLKNVKHIPDIRMNLISTRKLDDEGFCNTFRDSQWNLTRGSMVIAKGN 360

Query: 361 KFSSLYYMDAKIMESDINMVNDEANVELWHKRLSHISEKGLKILTKKNHLPNLKSTPLKR 389
           K SSLY M A++++S+IN V+D++  ELWH RL H+SEKGL IL KKN L  +K   LKR
Sbjct: 361 KSSSLYLMQARVIDSNINAVDDDSTFELWHNRLGHMSEKGLMILAKKNLLSGMKKGSLKR 413

[Close]

BLAST of CSPI01G19310 vs. TrEMBL
Match: A5AJF5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_010919 PE=4 SV=1)

HSP 1 Score: 422.2 bits (1084), Expect = 7.0e-115
Identity = 233/441 (52.83%), Postives = 285/441 (64.63%), Query Frame = 1


Query: 1   MEDILYVNNLHLSVFSDEKPDDKTDKEWELCHRKVCGFMRLWVEDNFLNHICEETHARTM 60
           MED+LY  + +L VF+ EKP++KTD +W+L HR VCG++R WV++N LNH+ EE HAR++
Sbjct: 23  MEDLLYAKDYYLLVFASEKPENKTDAKWDLLHRHVCGYIRQWVDNNVLNHVSEEKHARSL 82

Query: 61  WNKLESLCASKTGNNKMFLIKHMMELKYQDGAPMLDHLNTFQGILNQLSRMNIKFEDEIH 120
           WNKLE L A KTGNNK+FLIK M+ LKYQD   M DHLNTFQGI+NQL RMNIKFE+E+ 
Sbjct: 83  WNKLEQLYARKTGNNKLFLIKKMISLKYQDETTMTDHLNTFQGIINQLVRMNIKFEEEMQ 142

Query: 121 ELSVLGTLPDSWKIFRTSLSNSAPNGVLSMDLVKSSVLNEEMRRKSQSSSSQSDVLVTEK 180
            L +LGTL DSW+ FRTSLSNSAP+G ++MDLVKS VLNEEM RKSQ SSSQ DVLVT+K
Sbjct: 143 GLWLLGTLSDSWETFRTSLSNSAPDGTMNMDLVKSCVLNEEMGRKSQGSSSQLDVLVTKK 202

Query: 181 RGRSKSKSP-----------------------------------RDSKNHKGKEKKNDDD 240
           + RSKS+ P                                   RD K  K K+KKND+ 
Sbjct: 203 KERSKSRGPNNRDRRKSKTNKFANVECHYFHLKGHIVKYCRQLKRDMKQGKVKDKKNDNG 262

Query: 241 SDADTIIVATEDFYILSDGDVVNLATQHSIWVIDSGASVHATLKRDLHPI---------- 300
            + D +   T DF I+ D DVVN A Q + WVIDSGA +HAT ++D              
Sbjct: 263 GEDDRVATTTSDFLIVYDSDVVNFACQETSWVIDSGALIHATPQKDFFTSYTFGDFGSVX 322

Query: 301 --------LLVILAVLGWNKNGFRLILKNVKHIPDIRMNLISTCKLDDEGFCSTFDNGIW 360
                    + +  V     NG  LILKNVKHIPDIR   IST KLDDEGF +TF +  W
Sbjct: 323 MDNEGSAKAIGMRYVRLETSNGTMLILKNVKHIPDIR---ISTGKLDDEGFYNTFHDSQW 382

Query: 361 KLTKGSMVIAKAQKFSSLYYMDAKIMESDINMVNDEANVELWHKRLSHISEKGLKILTKK 389
           KLT GSMV  K +K SSL  M A++++S IN V+D++ VELWH +L H+SEKGL IL KK
Sbjct: 383 KLTIGSMVATKGKKCSSLCLMQARVIDSSINAVDDDSIVELWHNKLGHMSEKGLMILAKK 442

[Close]

BLAST of CSPI01G19310 vs. TrEMBL
Match: A5C3L0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_007384 PE=4 SV=1)

HSP 1 Score: 389.8 bits (1000), Expect = 3.9e-105
Identity = 216/431 (50.12%), Postives = 266/431 (61.72%), Query Frame = 1


Query: 1   MEDILYVNNLHLSVFSDEKPDDKTDKEWELCHRKVCGFMRLWVEDNFLNHICEETHARTM 60
           MED+LYV + +  VF+ E+P++K D EW L HR+VCG++R WV+DN LNH+ EE HAR++
Sbjct: 1   MEDLLYVKDYYXPVFASERPENKXDAEWNLLHRQVCGYIRQWVDDNVLNHVSEEKHARSL 60

Query: 61  WNKLESLCASKTGNNKMFLIKHMMELKYQDGAPMLDHLNTFQGILNQLSRMNIKFEDEIH 120
           WNKLE L A KTGNNK+ LIK MM LKYQDG PM DHLNTFQGI+NQL  MNIKFE+E+ 
Sbjct: 61  WNKLEQLYARKTGNNKLLLIKKMMSLKYQDGTPMTDHLNTFQGIINQLVGMNIKFEEEVQ 120

Query: 121 ELSVLGTLPDSWKIFRTSLSNSAPNGVLSMDLVKSSVLNEEMRRKSQSSSSQSDVLVTEK 180
            L +LGTLP+ W+ FRTSLSNSA +G+++MDLVKS VLNEEMRRKSQ SSSQS+VLVTEK
Sbjct: 121 GLWLLGTLPNLWETFRTSLSNSALDGIMNMDLVKSCVLNEEMRRKSQGSSSQSNVLVTEK 180

Query: 181 RGRSKSKSP-----------------------------------RDSKNHKGKEKKNDDD 240
           +G+SKS+ P                                   RD K  K KEKKND+ 
Sbjct: 181 KGKSKSRGPKNRDRSKSKTNKFANVECHYCHLKGHIKKYCRQLKRDMKQGKVKEKKNDNG 240

Query: 241 SDADTIIVATEDFYILSDGDVVNLATQHSIWVIDSGASVHATLKRDLHPILLVILAVLGW 300
            + D +   T DF I+ D DVVN A Q + WVIDSGAS+HAT ++D             +
Sbjct: 241 GEDDQVATTTSDFLIVYDSDVVNFACQETSWVIDSGASIHATPRKDFFT---------SY 300

Query: 301 NKNGFRLILKNVKHIPDIRMNLISTCKLDDEGFCSTFDNGI--------WKLTKGSMVIA 360
               F            +RM    + K    G  S    G             +GSMVIA
Sbjct: 301 TSGDFG----------SVRMGNDGSAKAIGMGDESLMMKGSATPSVIVSGSSLRGSMVIA 360

Query: 361 KAQKFSSLYYMDAKIMESDINMVNDEANVELWHKRLSHISEKGLKILTKKNHLPNLKSTP 389
           K  K SSLY M A++++S IN V+D++  ELWH RL H+SEKGL IL K N L  +K   
Sbjct: 361 KGNKSSSLYLMQARVIDSSINAVDDDSTFELWHNRLGHMSEKGLMILAKNNLLSGMKKGS 412

[Close]

BLAST of CSPI01G19310 vs. TrEMBL
Match: Q9ZRJ0_TOBAC (Retrotransposon Tto1 DNA OS=Nicotiana tabacum PE=4 SV=1)

HSP 1 Score: 385.6 bits (989), Expect = 7.3e-104
Identity = 202/442 (45.70%), Postives = 285/442 (64.48%), Query Frame = 1


Query: 1   MEDILYVNNLHLSVFSDEKPDDKTDKEWELCHRKVCGFMRLWVEDNFLNHICEETHARTM 60
           M+D+L+V  +HL VFS +KP+DK+D++WE  H +VCG++R +VEDN  NHI   THAR++
Sbjct: 23  MKDLLFVTKMHLPVFSSQKPEDKSDEDWEFEHNQVCGYIRQFVEDNVYNHISGVTHARSL 82

Query: 61  WNKLESLCASKTGNNKMFLIKHMMELKYQDGAPMLDHLNTFQGILNQLSRMNIKFEDEIH 120
           W+KLE L ASKTGNNK+F +  +M++KY +G  + DHLN  QGI++QLS M IKF+DE+ 
Sbjct: 83  WDKLEELYASKTGNNKLFYLTKLMQVKYVEGTTVADHLNEIQGIVDQLSGMGIKFDDEVL 142

Query: 121 ELSVLGTLPDSWKIFRTSLSNSAPNGVLSMDLVKSSVLNEEMRRKSQ-SSSSQSDVLVTE 180
            L VL TLP+SW+  + S++NSAPNGV++M+ VKS +LNEEMRR+SQ +SSSQS+VL   
Sbjct: 143 ALMVLATLPESWETLKVSITNSAPNGVVNMETVKSGILNEEMRRRSQGTSSSQSEVLAVT 202

Query: 181 KRGRSKSKSP-----------------------------------RDSKNHKGKEKKNDD 240
            RGRS++KS                                     D K +KGK+ K ++
Sbjct: 203 TRGRSQNKSQSNRDKSRGKSNKFANVECHYCKKKGHIKRFCRQFQNDQKKNKGKKVKPEE 262

Query: 241 DSDADTIIVATEDFYILSDGDVVNLATQHSIWVIDSGASVHATLKRDLHPILLV------ 300
            SD +T      +F ++ D D++NL TQ   WVIDSGA++HAT +R+L     +      
Sbjct: 263 SSDDETNSFG--EFNVVYDDDIINLTTQEMTWVIDSGATIHATPRRELFSSYTLGDFGRV 322

Query: 301 ------ILAVLG------WNKNGFRLILKNVKHIPDIRMNLISTCKLDDEGFCSTFDNGI 360
                    V+G         NG +L+L++V+H+PD+R+NLIS  KLD+EG+C+TF NG 
Sbjct: 323 KMGNANFSTVVGKGDVCLETMNGMKLLLRDVRHVPDMRLNLISVDKLDEEGYCNTFHNGQ 382

Query: 361 WKLTKGSMVIAKAQKFSSLYYMDAKIMESDINMVNDEANVELWHKRLSHISEKGLKILTK 389
           WKLTKGS+++A+  K S LY   A I +  IN+  +++N++LWH+RL H+SEK +  L K
Sbjct: 383 WKLTKGSLMVARGTKQSKLYVTQASISQQVINVAENDSNIKLWHRRLGHMSEKSMARLVK 442

[Close]

BLAST of CSPI01G19310 vs. TAIR10
Match: ATMG00300.1 (ATMG00300.1 Gag-Pol-related retrotransposon family protein)

HSP 1 Score: 64.3 bits (155), Expect = 1.9e-10
Identity = 32/94 (34.04%), Postives = 50/94 (53.19%), Query Frame = 1


Query: 296 EGFCSTFDNGIWKLTKGSMVIAKAQKFSSLYYMDAKIMESDINMVNDEAN-VELWHKRLS 355
           E  CS    G+ K+ KG   I K  +  SLY +   +   + N+     +   LWH RL+
Sbjct: 21  EASCS---EGVLKVLKGCRTILKGNRHDSLYILQGSVETGESNLAETAKDETRLWHSRLA 80

Query: 356 HISEKGLKILTKKNHLPNLKSTPLKRCPHCLAGK 389
           H+S++G+++L KK  L + K + LK C  C+ GK
Sbjct: 81  HMSQRGMELLVKKGFLDSSKVSSLKFCEDCIYGK 111

[Close]

BLAST of CSPI01G19310 vs. NCBI nr
Match: gi|147784778|emb|CAN75440.1| (hypothetical protein VITISV_007304 [Vitis vinifera])

HSP 1 Score: 456.1 bits (1172), Expect = 6.3e-125
Identity = 246/441 (55.78%), Postives = 292/441 (66.21%), Query Frame = 1


Query: 1   MEDILYVNNLHLSVFSDEKPDDKTDKEWELCHRKVCGFMRLWVEDNFLNHICEETHARTM 60
           MED+LYV + +L VF  E+P++KTD EW L HR+VCG++R WV+DN LNH+ EE H R+ 
Sbjct: 1   MEDLLYVKDYYLXVFXSERPENKTDAEWNLLHRQVCGYIRXWVDDNXLNHVSEEKHXRSX 60

Query: 61  WNKLESLCASKTGNNKMFLIKHMMELKYQDGAPMLDHLNTFQGILNQLSRMNIKFEDEIH 120
           WNKLE L A KT NNK+FLIK MM LKYQDG    DHLNTFQGI+NQL+ MNIKFE+E+ 
Sbjct: 61  WNKLEQLYARKTXNNKLFLIKKMMSLKYQDGTXXTDHLNTFQGIINQLAGMNIKFEEEVQ 120

Query: 121 ELSVLGTLPDSWKIFRTSLSNSAPNGVLSMDLVKSSVLNEEMRRKSQSSSSQSDVLVTEK 180
            L +LGTLPDSW+ FRTSLSNSAP+G+++MDLVKS VLNEEMRRKSQ SSSQS+VLV  K
Sbjct: 121 GLWLLGTLPDSWETFRTSLSNSAPDGIMNMDLVKSCVLNEEMRRKSQGSSSQSNVLVIXK 180

Query: 181 RGRSKSKSP-----------------------------------RDSKNHKGKEKKNDDD 240
            GRSKS+ P                                   RD K  K KEKKND+ 
Sbjct: 181 XGRSKSRGPKNRDRSKSKTNKFANVECHYCHLKGHIKKYCRQLKRDMKQGKVKEKKNDNG 240

Query: 241 SDADTIIVATEDFYILSDGDVVNLATQHSIWVIDSGASVHATLKRDLHPILL------VI 300
            + D +     DF I+ D DVVN A Q S WVID GAS+HAT ++D            V 
Sbjct: 241 GEDDQVATTISDFLIVYDSDVVNFACQESXWVIDXGASIHATPQKDFFTSYTSGDFGSVR 300

Query: 301 LAVLGWNK------------NGFRLILKNVKHIPDIRMNLISTCKLDDEGFCSTFDNGIW 360
           +   G  K            NG  L LKNVKHIPDIRMNLIST KLDDEGFC+TF +  W
Sbjct: 301 MGNDGSAKAIGMGDVRLETSNGTMLTLKNVKHIPDIRMNLISTGKLDDEGFCNTFRDSQW 360

Query: 361 KLTKGSMVIAKAQKFSSLYYMDAKIMESDINMVNDEANVELWHKRLSHISEKGLKILTKK 389
           KLT+GSMVIAK  K SSLY M A++++S IN V+D++  ELWH +L H+SEKGL IL KK
Sbjct: 361 KLTRGSMVIAKGNKSSSLYLMQARVIDSSINAVDDDSTFELWHNKLGHMSEKGLMILAKK 420

[Close]

BLAST of CSPI01G19310 vs. NCBI nr
Match: gi|147776056|emb|CAN69911.1| (hypothetical protein VITISV_027081 [Vitis vinifera])

HSP 1 Score: 454.9 bits (1169), Expect = 1.4e-124
Identity = 242/428 (56.54%), Postives = 290/428 (67.76%), Query Frame = 1


Query: 1   MEDILYVNNLHLSVFSDEKPDDKTDKEWELCHRKVCGFMRLWVEDNFLNHICEETHARTM 60
           MED+LY+ + +L VF+ E+P++KTD EW L HR+VCG++R WV+DN LNH+ +E HAR++
Sbjct: 1   MEDLLYMKDYYLPVFASERPENKTDAEWNLLHRQVCGYIRQWVDDNVLNHVSKEKHARSL 60

Query: 61  WNKLESLCASKTGNNKMFLIKHMMELKYQDGAPMLDHLNTFQGILNQLSRMNIKFEDEIH 120
           WNKLE L A KTGNNK+FLIK MM LKYQDG PM DHLNTFQGI+NQL+RMNIKFE+E+ 
Sbjct: 61  WNKLEQLYARKTGNNKLFLIKKMMSLKYQDGTPMTDHLNTFQGIINQLARMNIKFEEEVQ 120

Query: 121 ELSVLGTLPDSWKIFRTSLSNSAPNGVLSMDLVKSSVLNEEMRRKSQSSSSQSDVLVTEK 180
            L +LGTLPDSW+ FRTSLSNSAP               +EMRRKSQ SSSQS+VLVTEK
Sbjct: 121 GLWLLGTLPDSWETFRTSLSNSAP---------------DEMRRKSQGSSSQSNVLVTEK 180

Query: 181 RGRSKSKSP-----------------------------------RDSKNHKGKEKKNDDD 240
           RGRSKSK P                                   RD K  K KEKKND+ 
Sbjct: 181 RGRSKSKGPKNRDRSKSKTNKFANVECHYCHLKGHIKKYCHQLKRDMKQGKVKEKKNDNG 240

Query: 241 SDADTIIVATEDFYILSDGDVVNLATQHSIWVIDSGASVHATLKRDLHPILLVILAV-LG 300
            + D +   T DF I+ D DVVN A   + WVIDSGAS+HATL++D         A+ +G
Sbjct: 241 GEDDQVATTTSDFLIVYDSDVVNFACXETSWVIDSGASIHATLRKDFFTSYTSAKAIGMG 300

Query: 301 ----WNKNGFRLILKNVKHIPDIRMNLISTCKLDDEGFCSTFDNGIWKLTKGSMVIAKAQ 360
                  NG  L LKNVKHIPDIRMNLIST KLDDEGFC+TF +  W LT+GSMVIAK  
Sbjct: 301 DVRLETSNGTMLTLKNVKHIPDIRMNLISTRKLDDEGFCNTFRDSQWNLTRGSMVIAKGN 360

Query: 361 KFSSLYYMDAKIMESDINMVNDEANVELWHKRLSHISEKGLKILTKKNHLPNLKSTPLKR 389
           K SSLY M A++++S+IN V+D++  ELWH RL H+SEKGL IL KKN L  +K   LKR
Sbjct: 361 KSSSLYLMQARVIDSNINAVDDDSTFELWHNRLGHMSEKGLMILAKKNLLSGMKKGSLKR 413

[Close]

BLAST of CSPI01G19310 vs. NCBI nr
Match: gi|147777716|emb|CAN66809.1| (hypothetical protein VITISV_010919 [Vitis vinifera])

HSP 1 Score: 422.2 bits (1084), Expect = 1.0e-114
Identity = 233/441 (52.83%), Postives = 285/441 (64.63%), Query Frame = 1


Query: 1   MEDILYVNNLHLSVFSDEKPDDKTDKEWELCHRKVCGFMRLWVEDNFLNHICEETHARTM 60
           MED+LY  + +L VF+ EKP++KTD +W+L HR VCG++R WV++N LNH+ EE HAR++
Sbjct: 23  MEDLLYAKDYYLLVFASEKPENKTDAKWDLLHRHVCGYIRQWVDNNVLNHVSEEKHARSL 82

Query: 61  WNKLESLCASKTGNNKMFLIKHMMELKYQDGAPMLDHLNTFQGILNQLSRMNIKFEDEIH 120
           WNKLE L A KTGNNK+FLIK M+ LKYQD   M DHLNTFQGI+NQL RMNIKFE+E+ 
Sbjct: 83  WNKLEQLYARKTGNNKLFLIKKMISLKYQDETTMTDHLNTFQGIINQLVRMNIKFEEEMQ 142

Query: 121 ELSVLGTLPDSWKIFRTSLSNSAPNGVLSMDLVKSSVLNEEMRRKSQSSSSQSDVLVTEK 180
            L +LGTL DSW+ FRTSLSNSAP+G ++MDLVKS VLNEEM RKSQ SSSQ DVLVT+K
Sbjct: 143 GLWLLGTLSDSWETFRTSLSNSAPDGTMNMDLVKSCVLNEEMGRKSQGSSSQLDVLVTKK 202

Query: 181 RGRSKSKSP-----------------------------------RDSKNHKGKEKKNDDD 240
           + RSKS+ P                                   RD K  K K+KKND+ 
Sbjct: 203 KERSKSRGPNNRDRRKSKTNKFANVECHYFHLKGHIVKYCRQLKRDMKQGKVKDKKNDNG 262

Query: 241 SDADTIIVATEDFYILSDGDVVNLATQHSIWVIDSGASVHATLKRDLHPI---------- 300
            + D +   T DF I+ D DVVN A Q + WVIDSGA +HAT ++D              
Sbjct: 263 GEDDRVATTTSDFLIVYDSDVVNFACQETSWVIDSGALIHATPQKDFFTSYTFGDFGSVX 322

Query: 301 --------LLVILAVLGWNKNGFRLILKNVKHIPDIRMNLISTCKLDDEGFCSTFDNGIW 360
                    + +  V     NG  LILKNVKHIPDIR   IST KLDDEGF +TF +  W
Sbjct: 323 MDNEGSAKAIGMRYVRLETSNGTMLILKNVKHIPDIR---ISTGKLDDEGFYNTFHDSQW 382

Query: 361 KLTKGSMVIAKAQKFSSLYYMDAKIMESDINMVNDEANVELWHKRLSHISEKGLKILTKK 389
           KLT GSMV  K +K SSL  M A++++S IN V+D++ VELWH +L H+SEKGL IL KK
Sbjct: 383 KLTIGSMVATKGKKCSSLCLMQARVIDSSINAVDDDSIVELWHNKLGHMSEKGLMILAKK 442

[Close]

BLAST of CSPI01G19310 vs. NCBI nr
Match: gi|147816208|emb|CAN66323.1| (hypothetical protein VITISV_007384 [Vitis vinifera])

HSP 1 Score: 389.8 bits (1000), Expect = 5.5e-105
Identity = 216/431 (50.12%), Postives = 266/431 (61.72%), Query Frame = 1


Query: 1   MEDILYVNNLHLSVFSDEKPDDKTDKEWELCHRKVCGFMRLWVEDNFLNHICEETHARTM 60
           MED+LYV + +  VF+ E+P++K D EW L HR+VCG++R WV+DN LNH+ EE HAR++
Sbjct: 1   MEDLLYVKDYYXPVFASERPENKXDAEWNLLHRQVCGYIRQWVDDNVLNHVSEEKHARSL 60

Query: 61  WNKLESLCASKTGNNKMFLIKHMMELKYQDGAPMLDHLNTFQGILNQLSRMNIKFEDEIH 120
           WNKLE L A KTGNNK+ LIK MM LKYQDG PM DHLNTFQGI+NQL  MNIKFE+E+ 
Sbjct: 61  WNKLEQLYARKTGNNKLLLIKKMMSLKYQDGTPMTDHLNTFQGIINQLVGMNIKFEEEVQ 120

Query: 121 ELSVLGTLPDSWKIFRTSLSNSAPNGVLSMDLVKSSVLNEEMRRKSQSSSSQSDVLVTEK 180
            L +LGTLP+ W+ FRTSLSNSA +G+++MDLVKS VLNEEMRRKSQ SSSQS+VLVTEK
Sbjct: 121 GLWLLGTLPNLWETFRTSLSNSALDGIMNMDLVKSCVLNEEMRRKSQGSSSQSNVLVTEK 180

Query: 181 RGRSKSKSP-----------------------------------RDSKNHKGKEKKNDDD 240
           +G+SKS+ P                                   RD K  K KEKKND+ 
Sbjct: 181 KGKSKSRGPKNRDRSKSKTNKFANVECHYCHLKGHIKKYCRQLKRDMKQGKVKEKKNDNG 240

Query: 241 SDADTIIVATEDFYILSDGDVVNLATQHSIWVIDSGASVHATLKRDLHPILLVILAVLGW 300
            + D +   T DF I+ D DVVN A Q + WVIDSGAS+HAT ++D             +
Sbjct: 241 GEDDQVATTTSDFLIVYDSDVVNFACQETSWVIDSGASIHATPRKDFFT---------SY 300

Query: 301 NKNGFRLILKNVKHIPDIRMNLISTCKLDDEGFCSTFDNGI--------WKLTKGSMVIA 360
               F            +RM    + K    G  S    G             +GSMVIA
Sbjct: 301 TSGDFG----------SVRMGNDGSAKAIGMGDESLMMKGSATPSVIVSGSSLRGSMVIA 360

Query: 361 KAQKFSSLYYMDAKIMESDINMVNDEANVELWHKRLSHISEKGLKILTKKNHLPNLKSTP 389
           K  K SSLY M A++++S IN V+D++  ELWH RL H+SEKGL IL K N L  +K   
Sbjct: 361 KGNKSSSLYLMQARVIDSSINAVDDDSTFELWHNRLGHMSEKGLMILAKNNLLSGMKKGS 412

[Close]

BLAST of CSPI01G19310 vs. NCBI nr
Match: gi|1167523|dbj|BAA11674.1| (unnamed protein product [Nicotiana tabacum])

HSP 1 Score: 385.6 bits (989), Expect = 1.0e-103
Identity = 202/442 (45.70%), Postives = 285/442 (64.48%), Query Frame = 1


Query: 1   MEDILYVNNLHLSVFSDEKPDDKTDKEWELCHRKVCGFMRLWVEDNFLNHICEETHARTM 60
           M+D+L+V  +HL VFS +KP+DK+D++WE  H +VCG++R +VEDN  NHI   THAR++
Sbjct: 23  MKDLLFVTKMHLPVFSSQKPEDKSDEDWEFEHNQVCGYIRQFVEDNVYNHISGVTHARSL 82

Query: 61  WNKLESLCASKTGNNKMFLIKHMMELKYQDGAPMLDHLNTFQGILNQLSRMNIKFEDEIH 120
           W+KLE L ASKTGNNK+F +  +M++KY +G  + DHLN  QGI++QLS M IKF+DE+ 
Sbjct: 83  WDKLEELYASKTGNNKLFYLTKLMQVKYVEGTTVADHLNEIQGIVDQLSGMGIKFDDEVL 142

Query: 121 ELSVLGTLPDSWKIFRTSLSNSAPNGVLSMDLVKSSVLNEEMRRKSQ-SSSSQSDVLVTE 180
            L VL TLP+SW+  + S++NSAPNGV++M+ VKS +LNEEMRR+SQ +SSSQS+VL   
Sbjct: 143 ALMVLATLPESWETLKVSITNSAPNGVVNMETVKSGILNEEMRRRSQGTSSSQSEVLAVT 202

Query: 181 KRGRSKSKSP-----------------------------------RDSKNHKGKEKKNDD 240
            RGRS++KS                                     D K +KGK+ K ++
Sbjct: 203 TRGRSQNKSQSNRDKSRGKSNKFANVECHYCKKKGHIKRFCRQFQNDQKKNKGKKVKPEE 262

Query: 241 DSDADTIIVATEDFYILSDGDVVNLATQHSIWVIDSGASVHATLKRDLHPILLV------ 300
            SD +T      +F ++ D D++NL TQ   WVIDSGA++HAT +R+L     +      
Sbjct: 263 SSDDETNSFG--EFNVVYDDDIINLTTQEMTWVIDSGATIHATPRRELFSSYTLGDFGRV 322

Query: 301 ------ILAVLG------WNKNGFRLILKNVKHIPDIRMNLISTCKLDDEGFCSTFDNGI 360
                    V+G         NG +L+L++V+H+PD+R+NLIS  KLD+EG+C+TF NG 
Sbjct: 323 KMGNANFSTVVGKGDVCLETMNGMKLLLRDVRHVPDMRLNLISVDKLDEEGYCNTFHNGQ 382

Query: 361 WKLTKGSMVIAKAQKFSSLYYMDAKIMESDINMVNDEANVELWHKRLSHISEKGLKILTK 389
           WKLTKGS+++A+  K S LY   A I +  IN+  +++N++LWH+RL H+SEK +  L K
Sbjct: 383 WKLTKGSLMVARGTKQSKLYVTQASISQQVINVAENDSNIKLWHRRLGHMSEKSMARLVK 442

The following BLAST results are available for this feature:

BLAST of CSPI01G19310 vs. Swiss-Prot


Match Name	E-value	Identity	Description
POLX_TOBAC	1.5e-57	33.71	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
M300_ARATH	3.3e-09	34.04	Uncharacterized mitochondrial protein AtMg00300 OS=Arabidopsis thaliana GN=AtMg0...	[more]

BLAST of CSPI01G19310 vs. TrEMBL


Match Name	E-value	Identity	Description
A5C9D7_VITVI	4.4e-125	55.78	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_007304 PE=4 SV=1	[more]
A5BAF2_VITVI	9.8e-125	56.54	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027081 PE=4 SV=1	[more]
A5AJF5_VITVI	7.0e-115	52.83	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_010919 PE=4 SV=1	[more]
A5C3L0_VITVI	3.9e-105	50.12	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_007384 PE=4 SV=1	[more]
Q9ZRJ0_TOBAC	7.3e-104	45.70	Retrotransposon Tto1 DNA OS=Nicotiana tabacum PE=4 SV=1	[more]

BLAST of CSPI01G19310 vs. TAIR10


Match Name	E-value	Identity	Description
ATMG00300.1	1.9e-10	34.04	ATMG00300.1 Gag-Pol-related retrotransposon family protein	[more]

BLAST of CSPI01G19310 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|147784778\|emb\|CAN75440.1\|	6.3e-125	55.78	hypothetical protein VITISV_007304 [Vitis vinifera]	[more]
gi\|147776056\|emb\|CAN69911.1\|	1.4e-124	56.54	hypothetical protein VITISV_027081 [Vitis vinifera]	[more]
gi\|147777716\|emb\|CAN66809.1\|	1.0e-114	52.83	hypothetical protein VITISV_010919 [Vitis vinifera]	[more]
gi\|147816208\|emb\|CAN66323.1\|	5.5e-105	50.12	hypothetical protein VITISV_007384 [Vitis vinifera]	[more]
gi\|1167523\|dbj\|BAA11674.1\|	1.0e-103	45.70	unnamed protein product [Nicotiana tabacum]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR025724	GAG-pre-integrase_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090304	nucleic acid metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005488	binding
molecular_function	GO:0016787	hydrolase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G19310.1	CSPI01G19310.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025724	GAG-pre-integrase domain	PFAM	PF13976	gag_pre-integrs	coord: 325..388 score: 8.1
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 1..388 score: 1.1
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 28..166 score: 1.8

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI01G19310	Cucurbita pepo (Zucchini)	cpecpiB356
CSPI01G19310	Cucurbita pepo (Zucchini)	cpecpiB643
CSPI01G19310	Bottle gourd (USVL1VR-Ls)	cpilsiB063
CSPI01G19310	Melon (DHL92) v3.6.1	cpimedB053
CSPI01G19310	Cucumber (Gy14) v2	cgybcpiB002
CSPI01G19310	Silver-seed gourd	carcpiB0041
CSPI01G19310	Silver-seed gourd	carcpiB0140
CSPI01G19310	Silver-seed gourd	carcpiB0601
CSPI01G19310	Cucumber (Chinese Long) v3	cpicucB000
CSPI01G19310	Cucumber (Chinese Long) v3	cpicucB023
CSPI01G19310	Watermelon (97103) v2	cpiwmbB084
CSPI01G19310	Wax gourd	cpiwgoB102
CSPI01G19310	Wild cucumber (PI 183967)	cpicpiB009
CSPI01G19310	Cucumber (Gy14) v1	cgycpiB151
CSPI01G19310	Cucumber (Gy14) v1	cgycpiB348
CSPI01G19310	Cucurbita maxima (Rimu)	cmacpiB065
CSPI01G19310	Cucurbita maxima (Rimu)	cmacpiB102
CSPI01G19310	Cucurbita maxima (Rimu)	cmacpiB792
CSPI01G19310	Cucurbita moschata (Rifu)	cmocpiB057
CSPI01G19310	Cucurbita moschata (Rifu)	cmocpiB094
CSPI01G19310	Cucumber (Chinese Long) v2	cpicuB001
CSPI01G19310	Melon (DHL92) v3.5.1	cpimeB059
CSPI01G19310	Melon (DHL92) v3.5.1	cpimeB077
CSPI01G19310	Watermelon (Charleston Gray)	cpiwcgB009
CSPI01G19310	Watermelon (97103) v1	cpiwmB084
CSPI01G19310	Watermelon (97103) v1	cpiwmB090
CSPI01G19310	Watermelon (97103) v1	cpiwmB103