Cla001135 (gene) Watermelon (97103) v1

Overview
NameCla001135
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr0 : 7117989 .. 7118210 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCACCTCGAGGCAGGCGAGCTAGGCAAGCAGTAGCCGGAACTCCTGAAGCTACTGGGAACCATGGAGATATGTCTGAGGGTGAATCTAGCCATCCTCAAGCTGAGGTCAATGTCGAGGAACAACTATTTACTAGAATTGCTCAGAGATTGGCTGCAAGTATCGGATCAGTGGAATCCAATCCAGAAAAGAAATATAGTATTGAAAGATTAAAGGCTTAA

mRNA sequence

ATGCCACCTCGAGGCAGGCGAGCTAGGCAAGCAGTAGCCGGAACTCCTGAAGCTACTGGGAACCATGGAGATATGTCTGAGGGTGAATCTAGCCATCCTCAAGCTGAGGTCAATGTCGAGGAACAACTATTTACTAGAATTGCTCAGAGATTGGCTGCAAGTATCGGATCAGTGGAATCCAATCCAGAAAAGAAATATAGTATTGAAAGATTAAAGGCTTAA

Coding sequence (CDS)

ATGCCACCTCGAGGCAGGCGAGCTAGGCAAGCAGTAGCCGGAACTCCTGAAGCTACTGGGAACCATGGAGATATGTCTGAGGGTGAATCTAGCCATCCTCAAGCTGAGGTCAATGTCGAGGAACAACTATTTACTAGAATTGCTCAGAGATTGGCTGCAAGTATCGGATCAGTGGAATCCAATCCAGAAAAGAAATATAGTATTGAAAGATTAAAGGCTTAA

Protein sequence

MPPRGRRARQAVAGTPEATGNHGDMSEGESSHPQAEVNVEEQLFTRIAQRLAASIGSVESNPEKKYSIERLKA
Homology
[Close]
BLAST of Cla001135 vs. NCBI nr
Match: gi|659072264|ref|XP_008464580.1| (PREDICTED: uncharacterized protein LOC103502419 [Cucumis melo])

HSP 1 Score: 65.1 bits (157), Expect = 5.9e-08
Identity = 39/75 (52.00%), Postives = 47/75 (62.67%), Query Frame = 1 

Query: 3  PRGRRARQAVAGTP----EATGNHGDMSEGESSHPQAEVNVEEQLFTRIAQRLAASIGSV 62
          PRGR  +   A T     EA    G+ S+ ESS P  E N+EEQL  R+AQRL + I S 
Sbjct: 21 PRGRPRKHPDAKTSNAAREAAMGSGE-SDAESSRPHVEGNMEEQLLDRLAQRLISGIRSA 80

Query: 63 ESNPEKKYSIERLKA 74
          +S+PEKKY IERLKA
Sbjct: 81 QSDPEKKYGIERLKA 94

[Close]
BLAST of Cla001135 vs. NCBI nr
Match: gi|659068829|ref|XP_008446512.1| (PREDICTED: uncharacterized protein LOC103489219 [Cucumis melo])

HSP 1 Score: 59.7 bits (143), Expect = 2.5e-06
Identity = 36/74 (48.65%), Postives = 43/74 (58.11%), Query Frame = 1 

Query: 3  PRGRRARQAVAGTPEATGNHGDMSE---GESSHPQAEVNVEEQLFTRIAQRLAASIGSVE 62
          PRGR  ++ VA    A       SE    ESS P  E NVEEQL  R+AQR  + I S +
Sbjct: 2  PRGRPRKRPVAEASNAAREAAMESEEPDAESSRPHVEGNVEEQLLDRLAQRFVSRIKSTQ 61

Query: 63 SNPEKKYSIERLKA 74
          S+ EKK+ IERLKA
Sbjct: 62 SDLEKKFEIERLKA 75

The following BLAST results are available for this feature:
BLAST of Cla001135 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659072264|ref|XP_008464580.1|5.9e-0852.00PREDICTED: uncharacterized protein LOC103502419 [Cucumis melo][more]
gi|659068829|ref|XP_008446512.1|2.5e-0648.65PREDICTED: uncharacterized protein LOC103489219 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla001135Cla001135.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla001135Watermelon (97103) v1wmwmB000