ClCG08G002230.1 (mRNA) Watermelon (Charleston Gray)
The following sequences are available for this feature:
Legend: five_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.ACTTCTGGCGAGCGTTGTGGCGGTCAAACCCATAGATCAGATCTGCAATGCCAGCGCGATTCTCGACGGCAGCTCCATGGGTTTATGGTCGTAGTGTAACCAAGCAGATGCGACGCCCGTGAGACGGGAACCCACTTTGTACATCTTCGCATCAATGTCTCTCCGTTTCGATAGATTTCGGCATTGACCCACACTTCCATGTCTTCAAATTGGTGTACCCGTATCGTTTAAGGTCCATATCTGCAAGTTCGGACGTGTTCGGACATCAACTGGCAAGGATCAGAGCCTTTTTGGTAACATTCGGTAAGGGTTATTGCTTTAATTTCCTTTTCCAAATAAAGTATTTAAATTTTATTCTGAACTCTTGGAACTTATTTGTTGTTGTGTTTGGGTAAATTTTTAAGTATTTGATTAAGGTTCAGCGAGATTGAACATACTTCGGACTAGTTCGGACTCGATTAATGTGTCTTAGATCAGTCTTTGACTGGTGAAAATTTGTTGGTTGTAGTTTTGGGTTAATTCGGAGTTACTAATTTTGGATAAGAATATTCTTGTTGAAAATTCTCTCCGATTAAGGTTTTCGAACTAAGTTCTAACGCTTAAACATTATGTTTATTGCTATGAAGAACGGATGCAGGATGTGATAGGATATGACACATGAAGGATACGTCATTTTTTGTATATTTTTAAAATTTTTTTTTTTGTATGTATAAATTTAACATAAAAAGGGCATATGATGAAGAAATGGGTTTCTATTCTGGGAAGAAGGGGCAGCGGGGACAAGGCTAGGCGTGGGCGTTGCTTAGTAGAAGTATGGACGCTTTAGTTTGGTTAGCGTGTCTGTGTCGAACACTTGGACACTCTGATACTTGTTGGGCTTTTTTTTCTTTTAAATTTGTTTTTCTTTTAGACTGTTAGATTTGGGCCTTCATAATTAAAAATTTAATAATGGGTAGTGGGTTAAAATATTAAAATCCAACCCAAAAAATGCCATTGGCATGTGTCCCGTCCACGTATATGGAAGGGGACACGCGTGTCCGAAAATAATAATTAAAAATTCTACTTCATTTCAAGTATCTGATACATATCTCCCACGTATCTGGACGAATCAGTATCACATACGTATTTGATATTGATTCTCTACATATTTTGAAGTATTTATGCTTGATAGGTTTATCATTTAGGCTTTTTAAAAGTTGATGTTTGTTTAAGGAAGTGGATTGAGCATTGAGAGTTATAGGATTGTCAATCGAGGTAAGTAGTTTTCACATCCCTTCCACAATGTAAATATTTTTATAAAGATATGTTTTGGTTGTTGTGATTTGATAAATGGTTGAAAGTGTGTTTTGAATGTTTAAAAGTATGTTTTGCACCATTTGAAATTGAATGAAATTGTTTTGGATGTTTTAAATGTTGTTCTATTAGAAAATATGTTTTATGTGATTTGAGAATTGACTAAAGGTATTTTGTATACTTTTAGTTGATTTTGTCAAATAAAATGTATGATTTTTTTGAATGATGGTTGGAAATGTTTTGATTGGTTTTGAATTGGAAATGTTTATGTTTTAGCGTTGGTTATCTCTTAAAAACTTTTGAAAGGTTTGAATGGTTTGATTTGATGAGTTTTGTTGTCGAAGTTGCTATCTTGAAACTACATGTTTTGTATCAATTGTTTTTGAATCATTTGATTGGGGCTATTTGAATATGCCAGTTTCTGTGGTTTGGGGATTGTATGGTATTTTGTTGTAGTCAAATTTGGAATTGACGATATCTATTCTTACTTGAAGCTTATTTGTGAGGAGGCAAACATTCTTTGGAATGAAGATGAGTGTGGTGCAGTCACATGACCTCACACTTAAGTACTTTATGCTATTCTGGTTGGTTGTTAATCGACATTTTTGTTTTTCTGGTCGATTGTTAATCGACATTTCTGATTGGTGTTATTAACAGATAACCATTTATGTTGGGTTACTTTCAACTATGCATCTTTCCCTACTCAGTGTTGAAAGTTTTGAATGATTGATTGAAAGTTGTTTGATTGAAAATATTGAAAGATTAGTATTTTTGAAAACTGAAAAGTATGAAAGTTTGTTTATTGAGGGTTTTAAAAGTTTATTTGAACCTTTTGGTTTTGTTGAAAGACTATTTAAAGGTTTCCACTTCAAAGGTTTGGTTTTGAAGTTTTATTTACTTGAAAGATTTTGATTTCGAAAGTATTGTTTGTAGCAAAGTTTTGACAGAGTTTTTCAATGATTTGTATTTGTATTTCCAAAATTCTTTTTTTAAAGAAAATGAATTTCAAAGCTTAATAGGGCAACTACCTGTCGAGTATTTTTGTACTCACCTTTGTTTTTCCAAAATGCTTTTCGATGAAGAATTAGACATCTTAGAAATTGTTCCTAATAAGTTGCTTCCGCTGAAGTGTGTAAGTTGTAATGTTATATTTTTCTGCATTTTTTTTTTTTTTATTGTTATAATTGTTGTACTGGAAATTTTGTTTTGTGTGTGGAATAAAATTAAGATGATAGGAAATTAGAAAATGATGTTGGGCTTCAAATTGGATATAGTTGGATAAGTGGGCAATATGGCAACAAATTATTCTGATGCTGAAACTGAAGATAATTATTTGGAGACAAAAAACGAGGATTCTCCGCCAATTTCATCCTCGAAGTCAAAACGTGGAAGAGAAGAATATGAAAAATGCAGTCTCGAGATAAATGAGGAATCAAAGAAATACAAAAAAAAGAGTTTTCATTGGAATTGGACTGACGAATGTACCGTCTTGGAGAATTTTTATGAATTTGCAGGTAAAAAAAAAAAAAGTATTGTCATTACTTTTCATCTGTTGTATGTAATGCCCAAATTGTTGAATTATTTTATTGAATGGAACTAGATGTTTATTTGACAGGCAAAAATGGGAGTTATTCAGAGGAGTTCTACCATTTTGTGAAGGGGAAGTTGAGTAGTGAGGTATCCAATTCTCAACTGTCAGATAAAGTGTATAGGTTGAGGAAGAGATTCTTGAAGGATATATCTAATATGGAATTATTAGATGGAAAAATGAGTAAATTTTCAGATAGTAATTACGAGAAGCTGTTTGAGTTGTCGAGCAACATTTGGGGCGACCAAAATCCTAAAACTGGACACCCATCTTCTTCTTCAATAATTCAATGGAAGCCTGAAGAAGTTGATCGGTTCTATGAGAAAAGGTTTAAAATTTTTCTTGAAAACATTAAGCTTGACATCACCTGCATTCCACCTGATGTTTTGCAACACATTAGAAAAGAATGGGAAGATGTGAGGATTGCTAGAAATGCTTATCAGTTGAAGAATGCCAAGTTACTTGTAGAAATCTCTGATATAAGATGTACTCAAAATAACTGCTGA ACTTCTGGCGAGCGTTGTGGCGGTCAAACCCATAGATCAGATCTGCAATGCCAGCGCGATTCTCGACGGCAGCTCCATGGGTTTATGGTCGTAGTGTAACCAAGCAGATGCGACGCCCGTGAGACGGGAACCCACTTTGTACATCTTCGCATCAATGTCTCTCCGTTTCGATAGATTTCGGCATTGACCCACACTTCCATGTCTTCAAATTGGTGTACCCGTATCGTTTAAGGTCCATATCTGCAAGTTCGGACGTGTTCGGACATCAACTGGCAAGGATCAGAGCCTTTTTGGTAACATTCGTTGGATAAGTGGGCAATATGGCAACAAATTATTCTGATGCTGAAACTGAAGATAATTATTTGGAGACAAAAAACGAGGATTCTCCGCCAATTTCATCCTCGAAGTCAAAACGTGGAAGAGAAGAATATGAAAAATGCAGTCTCGAGATAAATGAGGAATCAAAGAAATACAAAAAAAAGAGTTTTCATTGGAATTGGACTGACGAATGTACCGTCTTGGAGAATTTTTATGAATTTGCAGGCAAAAATGGGAGTTATTCAGAGGAGTTCTACCATTTTGTGAAGGGGAAGTTGAGTAGTGAGGTATCCAATTCTCAACTGTCAGATAAAGTGTATAGGTTGAGGAAGAGATTCTTGAAGGATATATCTAATATGGAATTATTAGATGGAAAAATGAGTAAATTTTCAGATAGTAATTACGAGAAGCTGTTTGAGTTGTCGAGCAACATTTGGGGCGACCAAAATCCTAAAACTGGACACCCATCTTCTTCTTCAATAATTCAATGGAAGCCTGAAGAAGTTGATCGGTTCTATGAGAAAAGGTTTAAAATTTTTCTTGAAAACATTAAGCTTGACATCACCTGCATTCCACCTGATGTTTTGCAACACATTAGAAAAGAATGGGAAGATGTGAGGATTGCTAGAAATGCTTATCAGTTGAAGAATGCCAAGTTACTTGTAGAAATCTCTGATATAAGATGTACTCAAAATAACTGCTGA ATGGCAACAAATTATTCTGATGCTGAAACTGAAGATAATTATTTGGAGACAAAAAACGAGGATTCTCCGCCAATTTCATCCTCGAAGTCAAAACGTGGAAGAGAAGAATATGAAAAATGCAGTCTCGAGATAAATGAGGAATCAAAGAAATACAAAAAAAAGAGTTTTCATTGGAATTGGACTGACGAATGTACCGTCTTGGAGAATTTTTATGAATTTGCAGGCAAAAATGGGAGTTATTCAGAGGAGTTCTACCATTTTGTGAAGGGGAAGTTGAGTAGTGAGGTATCCAATTCTCAACTGTCAGATAAAGTGTATAGGTTGAGGAAGAGATTCTTGAAGGATATATCTAATATGGAATTATTAGATGGAAAAATGAGTAAATTTTCAGATAGTAATTACGAGAAGCTGTTTGAGTTGTCGAGCAACATTTGGGGCGACCAAAATCCTAAAACTGGACACCCATCTTCTTCTTCAATAATTCAATGGAAGCCTGAAGAAGTTGATCGGTTCTATGAGAAAAGGTTTAAAATTTTTCTTGAAAACATTAAGCTTGACATCACCTGCATTCCACCTGATGTTTTGCAACACATTAGAAAAGAATGGGAAGATGTGAGGATTGCTAGAAATGCTTATCAGTTGAAGAATGCCAAGTTACTTGTAGAAATCTCTGATATAAGATGTACTCAAAATAACTGCTGA MATNYSDAETEDNYLETKNEDSPPISSSKSKRGREEYEKCSLEINEESKKYKKKSFHWNWTDECTVLENFYEFAGKNGSYSEEFYHFVKGKLSSEVSNSQLSDKVYRLRKRFLKDISNMELLDGKMSKFSDSNYEKLFELSSNIWGDQNPKTGHPSSSSIIQWKPEEVDRFYEKRFKIFLENIKLDITCIPPDVLQHIRKEWEDVRIARNAYQLKNAKLLVEISDIRCTQNNC
BLAST of ClCG08G002230.1 vs. TrEMBL
Match: A0A0A0L833_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G498910 PE=4 SV=1) HSP 1 Score: 160.6 bits (405), Expect = 2.3e-36 Identity = 106/227 (46.70%), Postives = 128/227 (56.39%), Query Frame = 1
BLAST of ClCG08G002230.1 vs. TrEMBL
Match: D7TRY0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0868g00010 PE=4 SV=1) HSP 1 Score: 74.3 bits (181), Expect = 2.2e-10 Identity = 46/146 (31.51%), Postives = 74/146 (50.68%), Query Frame = 1
BLAST of ClCG08G002230.1 vs. TrEMBL
Match: A0A151S0W4_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_029836 PE=4 SV=1) HSP 1 Score: 72.0 bits (175), Expect = 1.1e-09 Identity = 56/231 (24.24%), Postives = 99/231 (42.86%), Query Frame = 1
BLAST of ClCG08G002230.1 vs. TrEMBL
Match: A0A161XIQ2_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_007866 PE=4 SV=1) HSP 1 Score: 67.4 bits (163), Expect = 2.6e-08 Identity = 40/115 (34.78%), Postives = 62/115 (53.91%), Query Frame = 1
BLAST of ClCG08G002230.1 vs. TrEMBL
Match: B9RXV5_RICCO (Transcription regulator, putative OS=Ricinus communis GN=RCOM_0906550 PE=4 SV=1) HSP 1 Score: 67.0 bits (162), Expect = 3.4e-08 Identity = 42/132 (31.82%), Postives = 69/132 (52.27%), Query Frame = 1
BLAST of ClCG08G002230.1 vs. TAIR10
Match: AT5G14280.1 (AT5G14280.1 DNA-binding storekeeper protein-related) HSP 1 Score: 58.5 bits (140), Expect = 6.2e-09 Identity = 41/143 (28.67%), Postives = 64/143 (44.76%), Query Frame = 1
BLAST of ClCG08G002230.1 vs. TAIR10
Match: AT4G00390.1 (AT4G00390.1 DNA-binding storekeeper protein-related transcriptional regulator) HSP 1 Score: 57.4 bits (137), Expect = 1.4e-08 Identity = 56/195 (28.72%), Postives = 85/195 (43.59%), Query Frame = 1
BLAST of ClCG08G002230.1 vs. TAIR10
Match: AT1G61730.1 (AT1G61730.1 DNA-binding storekeeper protein-related transcriptional regulator) HSP 1 Score: 56.6 bits (135), Expect = 2.4e-08 Identity = 49/164 (29.88%), Postives = 72/164 (43.90%), Query Frame = 1
BLAST of ClCG08G002230.1 vs. TAIR10
Match: AT4G01260.1 (AT4G01260.1 DNA-binding storekeeper protein-related transcriptional regulator) HSP 1 Score: 53.9 bits (128), Expect = 1.5e-07 Identity = 43/143 (30.07%), Postives = 64/143 (44.76%), Query Frame = 1
BLAST of ClCG08G002230.1 vs. TAIR10
Match: AT1G11510.1 (AT1G11510.1 DNA-binding storekeeper protein-related transcriptional regulator) HSP 1 Score: 52.4 bits (124), Expect = 4.4e-07 Identity = 37/126 (29.37%), Postives = 57/126 (45.24%), Query Frame = 1
BLAST of ClCG08G002230.1 vs. NCBI nr
Match: gi|700202957|gb|KGN58090.1| (hypothetical protein Csa_3G498910 [Cucumis sativus]) HSP 1 Score: 160.6 bits (405), Expect = 3.3e-36 Identity = 106/227 (46.70%), Postives = 128/227 (56.39%), Query Frame = 1
BLAST of ClCG08G002230.1 vs. NCBI nr
Match: gi|359497352|ref|XP_003635491.1| (PREDICTED: mediator-associated protein 1 [Vitis vinifera]) HSP 1 Score: 74.3 bits (181), Expect = 3.1e-10 Identity = 46/146 (31.51%), Postives = 74/146 (50.68%), Query Frame = 1
BLAST of ClCG08G002230.1 vs. NCBI nr
Match: gi|1012337180|gb|KYP48461.1| (hypothetical protein KK1_029836 [Cajanus cajan]) HSP 1 Score: 72.0 bits (175), Expect = 1.5e-09 Identity = 56/231 (24.24%), Postives = 99/231 (42.86%), Query Frame = 1
BLAST of ClCG08G002230.1 vs. NCBI nr
Match: gi|698534093|ref|XP_009763764.1| (PREDICTED: uncharacterized protein LOC104215616 [Nicotiana sylvestris]) HSP 1 Score: 72.0 bits (175), Expect = 1.5e-09 Identity = 49/144 (34.03%), Postives = 76/144 (52.78%), Query Frame = 1
BLAST of ClCG08G002230.1 vs. NCBI nr
Match: gi|697151307|ref|XP_009629872.1| (PREDICTED: uncharacterized protein LOC104119944 [Nicotiana tomentosiformis]) HSP 1 Score: 68.9 bits (167), Expect = 1.3e-08 Identity = 43/140 (30.71%), Postives = 75/140 (53.57%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
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