Cla009508 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla009508
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Os11g0264600 protein (Fragment) (AHRD V1 -- Q0ITE8_ORYSJ)
Location	Chr3 : 15010092 .. 15010823 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCATTCATTTGGAGAGATAGGTCTATTTGATAACCATTTGATTTTTGGTTTTTGGTTTTTGAAAATTATGCATATTTTCTCACAATTTCTAACAATACTTTTCATCTTTCTTAAGGAAACAATTGAATTCTTAGTCTATTTCTAAAATAAAAAACAAGGTTCTTTTTTTTAATAATAATACTAATAATTAAAAAAAAAAAAGTTGATAACAAAACAAAAATGCCTATAGGTACGAAGGGGTGTTTATAATTTTAATTTTAAAAAATCAACTGGTCATCAAACGAGGCTAACAATTTTCAGGCAGACTGTAAACTAATGTTGTCTAGAATTGCATAGACAACATAACTATTGTATTCTTAGTACATCCTATGCTCAAGTTTAGATTCAATGTTTTTCACAGAACTCCTGTATTGGCTGATGACATTCTTGTTGGTGAGACTGGAGAAGGGGAAGGTGTAAAGCCACCTGAAAAGTCATTTTGGGCTAAATATGTGAGTTTTAAAGAAAAGAATATATGAATGCCATAAATTTTGATATATTCTTACTGGATTTGTATCCCTATTATGCCAGTGGATGTACCTGATACCACTTGGATTGATTGTTATGAATGCCATAACACAAGCAATGAACATGGCTGAAGAACAGGTTAGTGGCCAAGCAGCACAGCCACAGCAGTCAGCCGCTGCAATTCAGCGCGGACCAGGTTCTTCTGCAGTAAGACGACGATAG

mRNA sequence

ATGCCATTCATTTGGAGAGATAGAACTCCTGTATTGGCTGATGACATTCTTGTTGGTGAGACTGGAGAAGGGGAAGGTGTAAAGCCACCTGAAAAGTCATTTTGGGCTAAATATTGGATGTACCTGATACCACTTGGATTGATTGTTATGAATGCCATAACACAAGCAATGAACATGGCTGAAGAACAGGTTAGTGGCCAAGCAGCACAGCCACAGCAGTCAGCCGCTGCAATTCAGCGCGGACCAGGTTCTTCTGCAGTAAGACGACGATAG

Coding sequence (CDS)

ATGCCATTCATTTGGAGAGATAGAACTCCTGTATTGGCTGATGACATTCTTGTTGGTGAGACTGGAGAAGGGGAAGGTGTAAAGCCACCTGAAAAGTCATTTTGGGCTAAATATTGGATGTACCTGATACCACTTGGATTGATTGTTATGAATGCCATAACACAAGCAATGAACATGGCTGAAGAACAGGTTAGTGGCCAAGCAGCACAGCCACAGCAGTCAGCCGCTGCAATTCAGCGCGGACCAGGTTCTTCTGCAGTAAGACGACGATAG

Protein sequence

MPFIWRDRTPVLADDILVGETGEGEGVKPPEKSFWAKYWMYLIPLGLIVMNAITQAMNMAEEQVSGQAAQPQQSAAAIQRGPGSSAVRRR

Homology

[Close]

BLAST of Cla009508 vs. TrEMBL
Match: A0A151TAX9_CAJCA (UPF0510 protein INM02 OS=Cajanus cajan GN=KK1_018776 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 2.0e-25
Identity = 60/85 (70.59%), Postives = 67/85 (78.82%), Query Frame = 1


Query: 8   RTPVLADDILVGETGEGEGVKPPEKSFWAKYWMYLIPLGLIVMNAITQAMNMAEEQVSGQ 67
           RTP+ A+D+L GE G+GE VKP EKSFWAKYWMYLIPLGLIVMNA+TQAMNM +EQ  GQ
Sbjct: 216 RTPIFAEDVLGGEEGDGEAVKPIEKSFWAKYWMYLIPLGLIVMNAVTQAMNMPDEQPGGQ 275

Query: 68  --AAQPQQSAAAIQRGPGSSAVRRR 91
             A   QQ  AA+QRGP S  VRRR
Sbjct: 276 PGAQTQQQPGAAVQRGPSSGGVRRR 300

[Close]

BLAST of Cla009508 vs. TrEMBL
Match: A0A0L9U3P4_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan03g038500 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 1.3e-24
Identity = 57/85 (67.06%), Postives = 66/85 (77.65%), Query Frame = 1


Query: 8   RTPVLADDILVGETGEGEGVKPPEKSFWAKYWMYLIPLGLIVMNAITQAMNMAEEQVSGQ 67
           RTP+ A+D L GE G+GEG+KP E+SFWAKYWMYLIPLGLI+MNA+TQAMNM E+Q  GQ
Sbjct: 216 RTPIFAEDALGGEEGDGEGIKPIERSFWAKYWMYLIPLGLILMNAVTQAMNMPEDQPGGQ 275

Query: 68  AAQP--QQSAAAIQRGPGSSAVRRR 91
              P  QQ   A+QRGP S  VRRR
Sbjct: 276 PGAPAQQQPGPAVQRGPSSGPVRRR 300

[Close]

BLAST of Cla009508 vs. TrEMBL
Match: A0A0S3RSG5_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.04G066700 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 1.3e-24
Identity = 57/85 (67.06%), Postives = 66/85 (77.65%), Query Frame = 1


Query: 8   RTPVLADDILVGETGEGEGVKPPEKSFWAKYWMYLIPLGLIVMNAITQAMNMAEEQVSGQ 67
           RTP+ A+D L GE G+GEG+KP E+SFWAKYWMYLIPLGLI+MNA+TQAMNM E+Q  GQ
Sbjct: 216 RTPIFAEDALGGEEGDGEGIKPIERSFWAKYWMYLIPLGLILMNAVTQAMNMPEDQPGGQ 275

Query: 68  AAQP--QQSAAAIQRGPGSSAVRRR 91
              P  QQ   A+QRGP S  VRRR
Sbjct: 276 PGAPAQQQPGPAVQRGPSSGPVRRR 300

[Close]

BLAST of Cla009508 vs. TrEMBL
Match: A0A067K3Q3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18048 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 1.7e-24
Identity = 60/83 (72.29%), Postives = 69/83 (83.13%), Query Frame = 1


Query: 8   RTPVLADDILVGETGEGEGVKPPEKSFWAKYWMYLIPLGLIVMNAITQAMNMAEEQVSGQ 67
           RTP+  ++  +GE GEGE V+PPE+SFWAKYWMYLIPLGLIVMNA+TQAMN+ EEQ  GQ
Sbjct: 224 RTPIFTEET-IGENGEGEAVQPPERSFWAKYWMYLIPLGLIVMNAVTQAMNLPEEQAMGQ 283

Query: 68  AAQPQQSAAAIQRGPGSSAVRRR 91
           A  P  SAAA+QRGPG SAVRRR
Sbjct: 284 AGAP--SAAAVQRGPG-SAVRRR 302

[Close]

BLAST of Cla009508 vs. TrEMBL
Match: A0A061F5G1_THECC (UPF0510 protein INM02 OS=Theobroma cacao GN=TCM_025127 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 2.3e-24
Identity = 62/84 (73.81%), Postives = 68/84 (80.95%), Query Frame = 1


Query: 8   RTPVLADDILVGETGEGEGVKPPEKSFWAKYWMYLIPLGLIVMNAITQAMNMAEEQVSGQ 67
           R PV  ++IL GE GEGE V PPE+SFWAKYWMYLIPLGLIVMNAITQAMN+ EEQ +GQ
Sbjct: 218 RAPVFTEEILGGENGEGEVVPPPERSFWAKYWMYLIPLGLIVMNAITQAMNLPEEQATGQ 277

Query: 68  A-AQPQQSAAAIQRGPGSSAVRRR 91
             AQ Q S  A+QRGP SSAVRRR
Sbjct: 278 VPAQGQPSGGAMQRGP-SSAVRRR 300

[Close]

BLAST of Cla009508 vs. NCBI nr
Match: gi|778664033|ref|XP_011660199.1| (PREDICTED: ER membrane protein complex subunit 10 [Cucumis sativus])

HSP 1 Score: 159.1 bits (401), Expect = 3.7e-36
Identity = 80/86 (93.02%), Postives = 82/86 (95.35%), Query Frame = 1


Query: 8   RTPVLADDILVGETGEGEGVKPPEKSFWAKYWMYLIPLGLIVMNAITQAMNMAEEQVSGQ 67
           RTPV A+DILVGETGEGEGVKPPEKSFWAKYWMYLIPLGLIVMNAITQAMNMAEEQVSGQ
Sbjct: 215 RTPVFAEDILVGETGEGEGVKPPEKSFWAKYWMYLIPLGLIVMNAITQAMNMAEEQVSGQ 274

Query: 68  A---AQPQQSAAAIQRGPGSSAVRRR 91
           A   AQPQQSAAA+QRGPGSSAVRRR
Sbjct: 275 AAGQAQPQQSAAAVQRGPGSSAVRRR 300

[Close]

BLAST of Cla009508 vs. NCBI nr
Match: gi|659085886|ref|XP_008443658.1| (PREDICTED: ER membrane protein complex subunit 10 [Cucumis melo])

HSP 1 Score: 159.1 bits (401), Expect = 3.7e-36
Identity = 80/86 (93.02%), Postives = 82/86 (95.35%), Query Frame = 1


Query: 8   RTPVLADDILVGETGEGEGVKPPEKSFWAKYWMYLIPLGLIVMNAITQAMNMAEEQVSGQ 67
           RTPV A+DILVGETGEGEGVKPPEKSFWAKYWMYLIPLGLIVMNAITQAMNMAEEQVSGQ
Sbjct: 215 RTPVFAEDILVGETGEGEGVKPPEKSFWAKYWMYLIPLGLIVMNAITQAMNMAEEQVSGQ 274

Query: 68  A---AQPQQSAAAIQRGPGSSAVRRR 91
           A   AQPQQSAAA+QRGPGSSAVRRR
Sbjct: 275 AAGQAQPQQSAAAVQRGPGSSAVRRR 300

[Close]

BLAST of Cla009508 vs. NCBI nr
Match: gi|1012352998|gb|KYP64186.1| (UPF0510 protein INM02 [Cajanus cajan])

HSP 1 Score: 122.9 bits (307), Expect = 2.9e-25
Identity = 60/85 (70.59%), Postives = 67/85 (78.82%), Query Frame = 1


Query: 8   RTPVLADDILVGETGEGEGVKPPEKSFWAKYWMYLIPLGLIVMNAITQAMNMAEEQVSGQ 67
           RTP+ A+D+L GE G+GE VKP EKSFWAKYWMYLIPLGLIVMNA+TQAMNM +EQ  GQ
Sbjct: 216 RTPIFAEDVLGGEEGDGEAVKPIEKSFWAKYWMYLIPLGLIVMNAVTQAMNMPDEQPGGQ 275

Query: 68  --AAQPQQSAAAIQRGPGSSAVRRR 91
             A   QQ  AA+QRGP S  VRRR
Sbjct: 276 PGAQTQQQPGAAVQRGPSSGGVRRR 300

[Close]

BLAST of Cla009508 vs. NCBI nr
Match: gi|729399743|ref|XP_010553848.1| (PREDICTED: ER membrane protein complex subunit 10-like [Tarenaya hassleriana])

HSP 1 Score: 121.7 bits (304), Expect = 6.5e-25
Identity = 62/86 (72.09%), Postives = 68/86 (79.07%), Query Frame = 1


Query: 8   RTPVLADDILVGETGEGEGVKPPEKSFWAKYWMYLIPLGLIVMNAITQAMNMAEEQVSGQ 67
           RTP+  ++IL GE  EGE   PPE+SFWAKYWMY+IPLGLIVMNA+TQAMNMAEE   GQ
Sbjct: 221 RTPIFTEEILGGEKVEGEAELPPERSFWAKYWMYVIPLGLIVMNAVTQAMNMAEEPAGGQ 280

Query: 68  AA---QPQQSAAAIQRGPGSSAVRRR 91
           A    Q QQSAAAIQRG  SSAVRRR
Sbjct: 281 AGGGPQGQQSAAAIQRGSSSSAVRRR 306

[Close]

BLAST of Cla009508 vs. NCBI nr
Match: gi|951062980|ref|XP_014523176.1| (PREDICTED: ER membrane protein complex subunit 10 [Vigna radiata var. radiata])

HSP 1 Score: 120.9 bits (302), Expect = 1.1e-24
Identity = 59/86 (68.60%), Postives = 68/86 (79.07%), Query Frame = 1


Query: 8   RTPVLADDILVGETGEGEGVKPPEKSFWAKYWMYLIPLGLIVMNAITQAMNMAEEQVSGQ 67
           RTP+ A+D L GE G+GEGVKP E+SFWAKYWMYLIPLGLI+MNA+TQAMNM E+Q  GQ
Sbjct: 216 RTPIFAEDALSGEEGDGEGVKPIERSFWAKYWMYLIPLGLILMNAVTQAMNMPEDQPGGQ 275

Query: 68  ---AAQPQQSAAAIQRGPGSSAVRRR 91
               AQ QQ  +A+QRG  S AVRRR
Sbjct: 276 PGAPAQQQQPGSAVQRGASSGAVRRR 301

The following BLAST results are available for this feature:

BLAST of Cla009508 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A151TAX9_CAJCA	2.0e-25	70.59	UPF0510 protein INM02 OS=Cajanus cajan GN=KK1_018776 PE=4 SV=1	[more]
A0A0L9U3P4_PHAAN	1.3e-24	67.06	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan03g038500 PE=4 SV=1	[more]
A0A0S3RSG5_PHAAN	1.3e-24	67.06	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.04G066700 PE=...	[more]
A0A067K3Q3_JATCU	1.7e-24	72.29	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18048 PE=4 SV=1	[more]
A0A061F5G1_THECC	2.3e-24	73.81	UPF0510 protein INM02 OS=Theobroma cacao GN=TCM_025127 PE=4 SV=1	[more]

BLAST of Cla009508 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778664033\|ref\|XP_011660199.1\|	3.7e-36	93.02	PREDICTED: ER membrane protein complex subunit 10 [Cucumis sativus]	[more]
gi\|659085886\|ref\|XP_008443658.1\|	3.7e-36	93.02	PREDICTED: ER membrane protein complex subunit 10 [Cucumis melo]	[more]
gi\|1012352998\|gb\|KYP64186.1\|	2.9e-25	70.59	UPF0510 protein INM02 [Cajanus cajan]	[more]
gi\|729399743\|ref\|XP_010553848.1\|	6.5e-25	72.09	PREDICTED: ER membrane protein complex subunit 10-like [Tarenaya hassleriana]	[more]
gi\|951062980\|ref\|XP_014523176.1\|	1.1e-24	68.60	PREDICTED: ER membrane protein complex subunit 10 [Vigna radiata var. radiata]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0005774	vacuolar membrane
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0044444	cytoplasmic part
cellular_component	GO:0043231	intracellular membrane-bounded organelle
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU58799	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla009508	Cla009508.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU58799	WMU58799	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR21397	NUCLEIC ACID BINGING PROTEIN	coord: 23..82 score: 3.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla009508	Cla97C03G061010	Watermelon (97103) v2	wmwmbB126
Cla009508	MELO3C010021	Melon (DHL92) v3.5.1	mewmB263
Cla009508	ClCG03G010290	Watermelon (Charleston Gray)	wcgwmB225
Cla009508	CSPI01G32000	Wild cucumber (PI 183967)	cpiwmB013
Cla009508	Cucsa.356400	Cucumber (Gy14) v1	cgywmB638
Cla009508	CmaCh10G008430	Cucurbita maxima (Rimu)	cmawmB051
Cla009508	CmoCh10G008770	Cucurbita moschata (Rifu)	cmowmB043
Cla009508	Lsi06G006750	Bottle gourd (USVL1VR-Ls)	lsiwmB391
Cla009508	Cp4.1LG18g02430	Cucurbita pepo (Zucchini)	cpewmB350
Cla009508	CsGy1G031000	Cucumber (Gy14) v2	cgybwmB013
Cla009508	MELO3C010021.2	Melon (DHL92) v3.6.1	medwmB254
Cla009508	Carg17808	Silver-seed gourd	carwmB0970
Cla009508	CsaV3_1G044270	Cucumber (Chinese Long) v3	cucwmB016
Cla009508	Bhi02G001112	Wax gourd	wgowmB661

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla009508	Cucurbita moschata (Rifu)	cmowmB084
Cla009508	Cucumber (Chinese Long) v2	cuwmB011
Cla009508	Cucurbita pepo (Zucchini)	cpewmB006
Cla009508	Silver-seed gourd	carwmB0531
Cla009508	Cucurbita maxima (Rimu)	cmawmB093