Cla000090 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla000090
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr0 : 12919451 .. 12919900 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGGAAGCATGTCTGTTGTGGAATATGAGAAGAAATTTACAGAGCTTGCCAAATATGCTTTGGCATTGATAGCAGAGGAAGCTGATAAGTGCAAGCGATTCGAGGAGGGCTTGCGCAGTGAAATCCGGACCCCAGTGACAGCTAGCACAGAGTGGACAGATCTTGTAAAACTAGTAGAAGCAGCCATGGGAGTAGAAAAGAGTTTAGCGGGAGCAGGAGTTGATGGAGGTGGAACTAGGACTGGGCAGACTTACAGTTCATCACAGGTGCAGACTCATCGAGGTGAAGGACGCTGTTTTGCACCAGGAGTATCTAGTAAGGGCAGGTTTAAAGCCCAGTCTAGTGGTTCGTACTTTCCAGGAGGATCACCAAAGGGAAACACATACGAGGGAGGTTTCCTCAGACGCGTCTGTACCTACAGGACGGTCGCAGTTCAGTCAACCTAG

mRNA sequence

ATGGATGGAAGCATGTCTGTTGTGGAATATGAGAAGAAATTTACAGAGCTTGCCAAATATGCTTTGGCATTGATAGCAGAGGAAGCTGATAAGTGCAAGCGATTCGAGGAGGGCTTGCGCAGTGAAATCCGGACCCCAGTGACAGCTAGCACAGAGTGGACAGATCTTGTAAAACTAGTAGAAGCAGCCATGGGAGTAGAAAAGAGTTTAGCGGGAGCAGGAGTTGATGGAGGTGGAACTAGGACTGGGCAGACTTACAGTTCATCACAGGTGCAGACTCATCGAGGTGAAGGACGCTGTTTTGCACCAGGAGTATCTAGTAAGGGCAGGTTTAAAGCCCAGTCTAGTGGTTCGTACTTTCCAGGAGGATCACCAAAGGGAAACACATACGAGGGAGGTTTCCTCAGACGCGTCTGTACCTACAGGACGGTCGCAGTTCAGTCAACCTAG

Coding sequence (CDS)

ATGGATGGAAGCATGTCTGTTGTGGAATATGAGAAGAAATTTACAGAGCTTGCCAAATATGCTTTGGCATTGATAGCAGAGGAAGCTGATAAGTGCAAGCGATTCGAGGAGGGCTTGCGCAGTGAAATCCGGACCCCAGTGACAGCTAGCACAGAGTGGACAGATCTTGTAAAACTAGTAGAAGCAGCCATGGGAGTAGAAAAGAGTTTAGCGGGAGCAGGAGTTGATGGAGGTGGAACTAGGACTGGGCAGACTTACAGTTCATCACAGGTGCAGACTCATCGAGGTGAAGGACGCTGTTTTGCACCAGGAGTATCTAGTAAGGGCAGGTTTAAAGCCCAGTCTAGTGGTTCGTACTTTCCAGGAGGATCACCAAAGGGAAACACATACGAGGGAGGTTTCCTCAGACGCGTCTGTACCTACAGGACGGTCGCAGTTCAGTCAACCTAG

Protein sequence

MDGSMSVVEYEKKFTELAKYALALIAEEADKCKRFEEGLRSEIRTPVTASTEWTDLVKLVEAAMGVEKSLAGAGVDGGGTRTGQTYSSSQVQTHRGEGRCFAPGVSSKGRFKAQSSGSYFPGGSPKGNTYEGGFLRRVCTYRTVAVQST

Homology

[Close]

BLAST of Cla000090 vs. TrEMBL
Match: M5XSR7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb016975mg PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 3.1e-10
Identity = 51/116 (43.97%), Postives = 66/116 (56.90%), Query Frame = 1


Query: 3   GSMSVVEYEKKFTELAKYALALIAEEADKCKRFEEGLRSEIRTPVTASTEWTDLVKLVEA 62
           GSMSVVEYE KF EL+++A  L+A E D+C+RFEEGL  EI+  VTA+T + ++  L +A
Sbjct: 176 GSMSVVEYEHKFNELSRFAPELVATEEDRCRRFEEGLWWEIQAVVTANT-YPNMRALAQA 235

Query: 63  AMGVEKSLAGAGVDGGGTRTGQTYSSSQVQTHR-GEGRCFAPGVSSKGRFKAQSSG 118
           A  V + L G  V      T      SQ  + R G     A G  S GR  + SSG
Sbjct: 236 AARVSRKL-GGNVSRRRRDTSGIGGPSQGPSKRGGSSSSSASGGWSGGRGSSSSSG 289

[Close]

BLAST of Cla000090 vs. TrEMBL
Match: A0A0A0KPI9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G034500 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 6.8e-10
Identity = 34/63 (53.97%), Postives = 46/63 (73.02%), Query Frame = 1


Query: 5  MSVVEYEKKFTELAKYALALIAEEADKCKRFEEGLRSEIRTPVTASTEWTDLVKLVEAAM 64
          M++ EYEKK+ +L ++A ++I +EA  CKR EEGLR EIRT VT   +W D  KLVEAA+
Sbjct: 1  MTIAEYEKKYKKLYEHATSVIEDEAKDCKRVEEGLREEIRTSVTPCAKWIDFSKLVEAAI 60

Query: 65 GVE 68
           V+
Sbjct: 61 RVQ 63

[Close]

BLAST of Cla000090 vs. TrEMBL
Match: M5VK25_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015000mg PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 8.9e-10
Identity = 53/135 (39.26%), Postives = 71/135 (52.59%), Query Frame = 1


Query: 3   GSMSVVEYEKKFTELAKYALALIAEEADKCKRFEEGLRSEIRTPVTASTEWTDLVKLVEA 62
           GSMSV+EYE KF EL+++A  L+A E D+C+RFEEGL  EI+  +TA+T + ++  L  A
Sbjct: 176 GSMSVMEYEHKFNELSRFAPELVATEEDRCRRFEEGLWWEIQAVITANT-YPNMRALAHA 235

Query: 63  AMGVEKSLAGAGVDGGGTRTGQTYSSSQVQTHR-GEGRCFAPGVSSKGRFKAQSSGSYFP 122
              V + L G  V      T      SQ  + R G     A G  S+GR  + SSG    
Sbjct: 236 VERVSRKL-GGNVGRRRRDTPGIGGPSQGPSKRGGSSSSSASGGWSEGRGSSSSSGR--S 295

Query: 123 GGSPKGNTYEGGFLR 137
           G  P    Y G  L+
Sbjct: 296 GSRPAWTQYSGHSLQ 306

[Close]

BLAST of Cla000090 vs. TrEMBL
Match: M5XAA1_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppb013312mg PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.6e-09
Identity = 50/134 (37.31%), Postives = 72/134 (53.73%), Query Frame = 1


Query: 3   GSMSVVEYEKKFTELAKYALALIAEEADKCKRFEEGLRSEIRTPVTASTEWTDLVKLVEA 62
           GSMSVVEYE KF +L+++A  L+A E D+C+RFEEGL  +I+  VTA+T + ++  L +A
Sbjct: 89  GSMSVVEYEHKFNKLSRFAPELVATEDDRCRRFEEGLCWKIQAVVTANT-YPNMRALAQA 148

Query: 63  AMGVEKSLAGAGVDGGGTRTGQTYSSSQVQTHRGEGRCFAPGVSSKGRFKAQSSGSYFPG 122
           A  V + L+G+        +G    S       G     A G  S GR  + +SG    G
Sbjct: 149 AERVSRKLSGSAGRRRRDTSGFGGPSQGPLKRGGSSSSSASGGWSGGRGSSSNSGR--SG 208

Query: 123 GSPKGNTYEGGFLR 137
               G + +G  LR
Sbjct: 209 SLQHGLSIQGCSLR 219

[Close]

BLAST of Cla000090 vs. TrEMBL
Match: M5Y283_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa019381mg PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 5.8e-09
Identity = 48/131 (36.64%), Postives = 69/131 (52.67%), Query Frame = 1


Query: 3   GSMSVVEYEKKFTELAKYALALIAEEADKCKRFEEGLRSEIRTPVTASTEWTDLVKLVEA 62
           GSMSV+EYE KF EL+++A  L+  E D+C RFEEGL  +I+  VTA+T +  +  L +A
Sbjct: 181 GSMSVLEYEHKFNELSRFAPELVTTEEDRCTRFEEGLWLDIQAVVTANT-YPTMRALAQA 240

Query: 63  AMGVEKSLA-GAGVDGGGTRTGQTYSSSQVQTHRGEGRCFAPGVSSKGRFKAQSSGSYFP 122
           A  V +  + GAG+      +      SQ  + RG     + G    G  +  SSGS   
Sbjct: 241 ADRVARKYSLGAGISRRRRDSSGFGEPSQGPSKRGGSSSSSAGSEWSGG-RGSSSGSRRS 300

Query: 123 GGSPKGNTYEG 133
           G  P  + + G
Sbjct: 301 GSRPAWSQHSG 309

[Close]

BLAST of Cla000090 vs. NCBI nr
Match: gi|659116534|ref|XP_008458118.1| (PREDICTED: uncharacterized protein LOC103497647 [Cucumis melo])

HSP 1 Score: 114.4 bits (285), Expect = 1.7e-22
Identity = 60/120 (50.00%), Postives = 84/120 (70.00%), Query Frame = 1


Query: 3   GSMSVVEYEKKFTELAKYALALIAEEADKCKRFEEGLRSEIRTPVTASTEWTDLVKLVEA 62
           GSM++ EYEKK+ +L+KYA ++I +E D+CKRFE+GLR EIRTPVTAS+EW +  KLVE 
Sbjct: 173 GSMTIAEYEKKYIKLSKYATSMIEDEIDRCKRFEDGLREEIRTPVTASSEWKEFSKLVET 232

Query: 63  AMGVEKSLAGAGVDGGGTR---TGQTYSSSQVQTHRGEGRCFAPGVSSKGRFKAQSSGSY 120
           A+ VEKSLA    +   +R   T  T   S+ +++R   R F  GV+S+G FK++  GS+
Sbjct: 233 AVRVEKSLAERKNEKEVSRNVSTAITQGVSRDKSNRQGNRRFVQGVASRGNFKSRRRGSF 292

[Close]

BLAST of Cla000090 vs. NCBI nr
Match: gi|659133542|ref|XP_008466780.1| (PREDICTED: uncharacterized protein LOC103504112 [Cucumis melo])

HSP 1 Score: 91.3 bits (225), Expect = 1.6e-15
Identity = 53/117 (45.30%), Postives = 74/117 (63.25%), Query Frame = 1


Query: 3   GSMSVVEYEKKFTELAKYALALIAEEADKCKRFEEGLRSEIRTPVTASTEWTDLVKLVEA 62
           GS+ VVEYE K+TEL++YA  ++A E+D+C+RFE GLR E+RTPVTA  +WT+  +LVE 
Sbjct: 74  GSLLVVEYEMKYTELSRYAEMIVASESDRCRRFERGLRFELRTPVTAIAKWTNFSQLVET 133

Query: 63  AMGVEKSLAGAGVDGGGTRTGQTYSSSQVQTHRGEGRCFAPGVSSKG--RFKAQSSG 118
           A+ VE+S+         +R   T S  + +    E R F PGV+  G   FK +S G
Sbjct: 134 ALRVEQSIVEEKSAMELSRGVSTTSGIRGR----EQRRFTPGVNVSGCQDFKRRSGG 186

[Close]

BLAST of Cla000090 vs. NCBI nr
Match: gi|659130058|ref|XP_008464978.1| (PREDICTED: uncharacterized protein LOC103502718 [Cucumis melo])

HSP 1 Score: 90.9 bits (224), Expect = 2.0e-15
Identity = 50/113 (44.25%), Postives = 72/113 (63.72%), Query Frame = 1


Query: 3   GSMSVVEYEKKFTELAKYALALIAEEADKCKRFEEGLRSEIRTPVTASTEWTDLVKLVEA 62
           GS+SVVEYE+K+TEL++YA  ++A E+D+C+RFE GLR EIRTP+TA  +W +  +LVE 
Sbjct: 54  GSLSVVEYERKYTELSRYAEMIVASESDRCRRFERGLRFEIRTPMTAIAKWMNFSQLVET 113

Query: 63  AMGVEKSLAGAGVDGGGTRTGQTYSSSQVQTHRGEGRCFAPGVSSKGRFKAQS 116
           A+ VE+S+         +R   T S  Q   HR  G+     +SS   ++ QS
Sbjct: 114 ALRVEQSIVEEKSTMELSRGVSTTSGCQDFKHRSGGKPLRQ-MSSGSAYQRQS 165

[Close]

BLAST of Cla000090 vs. NCBI nr
Match: gi|659118041|ref|XP_008458920.1| (PREDICTED: uncharacterized protein LOC103498182 [Cucumis melo])

HSP 1 Score: 88.2 bits (217), Expect = 1.3e-14
Identity = 55/121 (45.45%), Postives = 74/121 (61.16%), Query Frame = 1


Query: 3   GSMSVVEYEKKFTELAKYALALIAEEADKCKRFEEGLRSEIRTPVTASTEWTDLVKLVEA 62
           GS+S+ EYE+K+TEL++YA  ++A E+D+C RFE GLR EIRTPVTA  +WT+  +LVE 
Sbjct: 69  GSLSMAEYERKYTELSRYAGMIMASESDRCHRFERGLRFEIRTPVTAIAKWTNFSQLVET 128

Query: 63  AMGVEKSLAGAGVDGGGTRTGQTYSSSQVQTHRG-EGRCFAPGVSSKG--RFKAQSSGSY 121
           A+ VE+S+         +R   T S       RG E R F  GV+  G   FK +S G  
Sbjct: 129 ALRVEQSIVEEKSAMELSRGVSTTSGI-----RGPEQRRFTSGVNVSGCQDFKRRSGGKP 184

[Close]

BLAST of Cla000090 vs. NCBI nr
Match: gi|659112465|ref|XP_008456237.1| (PREDICTED: uncharacterized protein LOC103496240 [Cucumis melo])

HSP 1 Score: 88.2 bits (217), Expect = 1.3e-14
Identity = 53/117 (45.30%), Postives = 72/117 (61.54%), Query Frame = 1


Query: 3   GSMSVVEYEKKFTELAKYALALIAEEADKCKRFEEGLRSEIRTPVTASTEWTDLVKLVEA 62
           GS SV EYE+K+TEL++YA  ++A E+D C+RFE GLR EIRT VTA  +WT+  +LVE 
Sbjct: 94  GSFSVAEYERKYTELSRYAEMIVASESDMCRRFERGLRFEIRTLVTAIAKWTNFSQLVET 153

Query: 63  AMGVEKSLAGAGVDGGGTRTGQTYSSSQVQTHRGEGRCFAPGVSSKG--RFKAQSSG 118
           A+ VE+S+         +R   T S  + +    E R F PGV+  G   FK +S G
Sbjct: 154 ALRVEQSIVEEKSAMELSRGVSTTSGIRGR----EQRRFTPGVNVSGCQDFKRRSGG 206

The following BLAST results are available for this feature:

BLAST of Cla000090 vs. TrEMBL


Match Name	E-value	Identity	Description
M5XSR7_PRUPE	3.1e-10	43.97	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb016975mg PE=4 SV=1	[more]
A0A0A0KPI9_CUCSA	6.8e-10	53.97	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G034500 PE=4 SV=1	[more]
M5VK25_PRUPE	8.9e-10	39.26	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015000mg PE=4 SV=1	[more]
M5XAA1_PRUPE	2.6e-09	37.31	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppb013312mg PE=4 S...	[more]
M5Y283_PRUPE	5.8e-09	36.64	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa019381mg PE=4 SV=1	[more]

BLAST of Cla000090 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659116534\|ref\|XP_008458118.1\|	1.7e-22	50.00	PREDICTED: uncharacterized protein LOC103497647 [Cucumis melo]	[more]
gi\|659133542\|ref\|XP_008466780.1\|	1.6e-15	45.30	PREDICTED: uncharacterized protein LOC103504112 [Cucumis melo]	[more]
gi\|659130058\|ref\|XP_008464978.1\|	2.0e-15	44.25	PREDICTED: uncharacterized protein LOC103502718 [Cucumis melo]	[more]
gi\|659118041\|ref\|XP_008458920.1\|	1.3e-14	45.45	PREDICTED: uncharacterized protein LOC103498182 [Cucumis melo]	[more]
gi\|659112465\|ref\|XP_008456237.1\|	1.3e-14	45.30	PREDICTED: uncharacterized protein LOC103496240 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046872	metal ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla000090	Cla000090.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla000090	Watermelon (97103) v1	wmwmB001
Cla000090	Watermelon (97103) v1	wmwmB005