ClCG02G009050.1 (mRNA) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG02G009050.1
Type	mRNA
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Gamma-tubulin complex component 2
Location	CG_Chr02 : 12579160 .. 12579492 (+)
Sequence length	333

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTGGCATAAATGAGGAAACAGAGAAGAGTTTTGCAGAGTTGTTGTCGGAGGAACTGAAACTGAGGGAAGCTGAAGCTTTGGAGAGTCATCGGCTCGCCGACATATCCCTGCTAGAAGCAAAGAAGATGACATCTCAATATCAGAAAGAAGCAGATAAGTGCAATTCAGGCATGGAAACATGTGAAGCAGCAAGGGAAAGGGCTGAAGCTACATTAGCTTCGCAAAAGAGGCTAACAGCATTATGGGAGACTAGGGCTCGCCAAAGAGGATGGAGAGACGACATTGTTAGATCCCGTGCTCAGACCCATGGTACCGTCCAAACCTCATAA

mRNA sequence

ATGACTGGCATAAATGAGGAAACAGAGAAGAGTTTTGCAGAGTTGTTGTCGGAGGAACTGAAACTGAGGGAAGCTGAAGCTTTGGAGAGTCATCGGCTCGCCGACATATCCCTGCTAGAAGCAAAGAAGATGACATCTCAATATCAGAAAGAAGCAGATAAGTGCAATTCAGGCATGGAAACATGTGAAGCAGCAAGGGAAAGGGCTGAAGCTACATTAGCTTCGCAAAAGAGGCTAACAGCATTATGGGAGACTAGGGCTCGCCAAAGAGGATGGAGAGACGACATTGTTAGATCCCGTGCTCAGACCCATGGTACCGTCCAAACCTCATAA

Coding sequence (CDS)

ATGACTGGCATAAATGAGGAAACAGAGAAGAGTTTTGCAGAGTTGTTGTCGGAGGAACTGAAACTGAGGGAAGCTGAAGCTTTGGAGAGTCATCGGCTCGCCGACATATCCCTGCTAGAAGCAAAGAAGATGACATCTCAATATCAGAAAGAAGCAGATAAGTGCAATTCAGGCATGGAAACATGTGAAGCAGCAAGGGAAAGGGCTGAAGCTACATTAGCTTCGCAAAAGAGGCTAACAGCATTATGGGAGACTAGGGCTCGCCAAAGAGGATGGAGAGACGACATTGTTAGATCCCGTGCTCAGACCCATGGTACCGTCCAAACCTCATAA

Protein sequence

MTGINEETEKSFAELLSEELKLREAEALESHRLADISLLEAKKMTSQYQKEADKCNSGMETCEAARERAEATLASQKRLTALWETRARQRGWRDDIVRSRAQTHGTVQTS

Homology

[Close]

BLAST of ClCG02G009050.1 vs. TrEMBL
Match: A0A0A0LQC2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G416150 PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 3.1e-44
Identity = 96/109 (88.07%), Postives = 102/109 (93.58%), Query Frame = 1


Query: 2   TGINEETEKSFAELLSEELKLREAEALESHRLADISLLEAKKMTSQYQKEADKCNSGMET 61
           +G+NEETEK+FAELLSEELKLREAEALE+HR ADISLLEAKKMTSQYQKEADKCNSGMET
Sbjct: 85  SGMNEETEKNFAELLSEELKLREAEALENHRRADISLLEAKKMTSQYQKEADKCNSGMET 144

Query: 62  CEAARERAEATLASQKRLTALWETRARQRGWRDDIVRSRAQTHGTVQTS 111
           CEAARERAEATLASQKRLTALWETRARQRGWRD+IV SR    GT+Q S
Sbjct: 145 CEAARERAEATLASQKRLTALWETRARQRGWRDNIVTSR----GTIQGS 189

[Close]

BLAST of ClCG02G009050.1 vs. TrEMBL
Match: B9STL4_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1016720 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 2.6e-38
Identity = 79/107 (73.83%), Postives = 97/107 (90.65%), Query Frame = 1


Query: 3   GINEETEKSFAELLSEELKLREAEALESHRLADISLLEAKKMTSQYQKEADKCNSGMETC 62
           G++E+TEK+FA+LL+EELKLREAEALE+ R AD++LLEAKKMTSQYQKEADKCNSGMETC
Sbjct: 81  GVSEDTEKNFADLLTEELKLREAEALENQRHADMALLEAKKMTSQYQKEADKCNSGMETC 140

Query: 63  EAARERAEATLASQKRLTALWETRARQRGWRDDIVRSRAQTHGTVQT 110
           E ARE++EATLA+QK+LTALWE+RARQRGW++   RS AQ+ G V +
Sbjct: 141 EEAREKSEATLAAQKKLTALWESRARQRGWKEGAARSHAQSQGNVDS 187

[Close]

BLAST of ClCG02G009050.1 vs. TrEMBL
Match: A0A067DFQ5_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g036708mg PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 2.2e-37
Identity = 78/105 (74.29%), Postives = 94/105 (89.52%), Query Frame = 1


Query: 4   INEETEKSFAELLSEELKLREAEALESHRLADISLLEAKKMTSQYQKEADKCNSGMETCE 63
           ++E+TEK+FAELL+EELKLREAEALE+ + AD++LLEAKK+TSQYQKEADKCNSGMETCE
Sbjct: 8   VSEDTEKNFAELLTEELKLREAEALENQQRADMALLEAKKLTSQYQKEADKCNSGMETCE 67

Query: 64  AARERAEATLASQKRLTALWETRARQRGWRDDIVRSRAQTHGTVQ 109
            ARE+AEA LA+QK+LTA WE RARQ+GWR+ I RS AQ+ GT Q
Sbjct: 68  EAREKAEAALAAQKKLTATWEQRARQKGWREGITRSHAQSQGTAQ 112

[Close]

BLAST of ClCG02G009050.1 vs. TrEMBL
Match: V4W4A9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016847mg PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 2.2e-37
Identity = 78/105 (74.29%), Postives = 94/105 (89.52%), Query Frame = 1


Query: 4   INEETEKSFAELLSEELKLREAEALESHRLADISLLEAKKMTSQYQKEADKCNSGMETCE 63
           ++E+TEK+FAELL+EELKLREAEALE+ + AD++LLEAKK+TSQYQKEADKCNSGMETCE
Sbjct: 82  VSEDTEKNFAELLAEELKLREAEALENQQRADMALLEAKKLTSQYQKEADKCNSGMETCE 141

Query: 64  AARERAEATLASQKRLTALWETRARQRGWRDDIVRSRAQTHGTVQ 109
            ARE+AEA LA+QK+LTA WE RARQ+GWR+ I RS AQ+ GT Q
Sbjct: 142 EAREKAEAALAAQKKLTATWEQRARQKGWREGITRSHAQSQGTAQ 186

[Close]

BLAST of ClCG02G009050.1 vs. TrEMBL
Match: A0A067KEV8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13718 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 4.8e-37
Identity = 78/99 (78.79%), Postives = 92/99 (92.93%), Query Frame = 1


Query: 4   INEETEKSFAELLSEELKLREAEALESHRLADISLLEAKKMTSQYQKEADKCNSGMETCE 63
           ++E+TEK+FA+LL+EELKLREAEALES R AD++LLEAKKMTSQYQKEADKCNSGMETCE
Sbjct: 81  VSEDTEKNFADLLTEELKLREAEALESQRRADMALLEAKKMTSQYQKEADKCNSGMETCE 140

Query: 64  AARERAEATLASQKRLTALWETRARQRGWRDDIVRSRAQ 103
            ARE+AEA LASQK+LTALWE RARQRGW++ + +SRAQ
Sbjct: 141 EAREKAEAALASQKKLTALWELRARQRGWKEGMTKSRAQ 179

[Close]

BLAST of ClCG02G009050.1 vs. TAIR10
Match: AT1G05070.1 (AT1G05070.1 Protein of unknown function (DUF1068))

HSP 1 Score: 147.9 bits (372), Expect = 3.7e-36
Identity = 69/107 (64.49%), Postives = 85/107 (79.44%), Query Frame = 1


Query: 4   INEETEKSFAELLSEELKLREAEALESHRLADISLLEAKKMTSQYQKEADKCNSGMETCE 63
           +NE+TEK++AELL+EELKLREAE+LE H+ AD+ LLEAKK+TS YQKEADKCNSGMETCE
Sbjct: 78  VNEDTEKNYAELLTEELKLREAESLEKHKRADMGLLEAKKVTSSYQKEADKCNSGMETCE 137

Query: 64  AARERAEATLASQKRLTALWETRARQRGWRDDIVRSRAQTHGTVQTS 111
            ARE+AE  LA QK+LT+ WE RARQ+GWR+   +   ++   VQ +
Sbjct: 138 EAREKAELALAEQKKLTSRWEERARQKGWREGSTKPNVKSKSNVQVA 184

[Close]

BLAST of ClCG02G009050.1 vs. TAIR10
Match: AT2G32580.1 (AT2G32580.1 Protein of unknown function (DUF1068))

HSP 1 Score: 135.6 bits (340), Expect = 1.9e-32
Identity = 62/100 (62.00%), Postives = 79/100 (79.00%), Query Frame = 1


Query: 4   INEETEKSFAELLSEELKLREAEALESHRLADISLLEAKKMTSQYQKEADKCNSGMETCE 63
           +NE+TEK++AELL+EELK REA ++E H+  D  LLEAKK+TS YQKEADKCNSGMETCE
Sbjct: 77  VNEDTEKNYAELLTEELKQREAASMEKHKRVDTGLLEAKKITSSYQKEADKCNSGMETCE 136

Query: 64  AARERAEATLASQKRLTALWETRARQRGWRDDIVRSRAQT 104
            ARE+AE  L  QK+LT++WE RARQ+G++D   +S  ++
Sbjct: 137 EAREKAEKALVEQKKLTSMWEQRARQKGYKDGATKSTVKS 176

[Close]

BLAST of ClCG02G009050.1 vs. TAIR10
Match: AT4G04360.1 (AT4G04360.1 Protein of unknown function (DUF1068))

HSP 1 Score: 120.2 bits (300), Expect = 8.2e-28
Identity = 59/95 (62.11%), Postives = 71/95 (74.74%), Query Frame = 1


Query: 5   NEETEKSFAELLSEELKLREAEALESHRLADISLLEAKKMTSQYQKEADKCNSGMETCEA 64
           +EE+E SF E+++EELKLREA+A E    AD  LL+AKK  SQYQKEADKC+ GMETCE 
Sbjct: 79  SEESESSFTEMVAEELKLREAQAQEDEWRADRLLLDAKKAASQYQKEADKCSMGMETCEL 138

Query: 65  ARERAEATLASQKRLTALWETRARQRGWRDDIVRS 100
           ARE+AEA L  Q+RL+ +WE RARQ GW++  V S
Sbjct: 139 AREKAEAALDEQRRLSYMWELRARQGGWKEGTVAS 173

[Close]

BLAST of ClCG02G009050.1 vs. TAIR10
Match: AT4G30996.1 (AT4G30996.1 Protein of unknown function (DUF1068))

HSP 1 Score: 110.2 bits (274), Expect = 8.5e-25
Identity = 51/92 (55.43%), Postives = 68/92 (73.91%), Query Frame = 1


Query: 4   INEETEKSFAELLSEELKLREAEALESHRLADISLLEAKKMTSQYQKEADKCNSGMETCE 63
           + +E EK F +LL+EELKL+EA A E  R  +++L EAK++ SQYQKEA+KCN+  E CE
Sbjct: 81  LKQEMEKQFVDLLTEELKLQEAVADEHSRHMNVTLAEAKRVASQYQKEAEKCNAATEICE 140

Query: 64  AARERAEATLASQKRLTALWETRARQRGWRDD 96
           +ARERAEA L  ++++T+LWE RARQ GW  +
Sbjct: 141 SARERAEALLIKERKITSLWEKRARQSGWEGE 172

[Close]

BLAST of ClCG02G009050.1 vs. TAIR10
Match: AT2G24290.1 (AT2G24290.1 Protein of unknown function (DUF1068))

HSP 1 Score: 108.2 bits (269), Expect = 3.2e-24
Identity = 51/92 (55.43%), Postives = 67/92 (72.83%), Query Frame = 1


Query: 4   INEETEKSFAELLSEELKLREAEALESHRLADISLLEAKKMTSQYQKEADKCNSGMETCE 63
           + EE EK F +LL+EELKL+EA A E  R  +++L EAK++ SQYQKEA+KCN+  E CE
Sbjct: 82  LKEEMEKPFVDLLTEELKLQEAVADEHSRHMNVTLAEAKRVASQYQKEAEKCNAATEICE 141

Query: 64  AARERAEATLASQKRLTALWETRARQRGWRDD 96
           +ARERA+A L  ++++T LWE RARQ GW  +
Sbjct: 142 SARERAQALLLKERKITFLWERRARQLGWEGE 173

[Close]

BLAST of ClCG02G009050.1 vs. NCBI nr
Match: gi|659111810|ref|XP_008455918.1| (PREDICTED: uncharacterized protein LOC103495987 isoform X2 [Cucumis melo])

HSP 1 Score: 189.1 bits (479), Expect = 4.1e-45
Identity = 98/109 (89.91%), Postives = 102/109 (93.58%), Query Frame = 1


Query: 2   TGINEETEKSFAELLSEELKLREAEALESHRLADISLLEAKKMTSQYQKEADKCNSGMET 61
           +G+NEETEK+FAELLSEELKLREAEALE+HR ADISLLEAKKMTSQYQKEADKCNSGMET
Sbjct: 77  SGMNEETEKNFAELLSEELKLREAEALENHRRADISLLEAKKMTSQYQKEADKCNSGMET 136

Query: 62  CEAARERAEATLASQKRLTALWETRARQRGWRDDIVRSRAQTHGTVQTS 111
           CEAARERAEATLASQKRLT LWETRARQRGWRDDIV SR    GTVQTS
Sbjct: 137 CEAARERAEATLASQKRLTTLWETRARQRGWRDDIVTSR----GTVQTS 181

[Close]

BLAST of ClCG02G009050.1 vs. NCBI nr
Match: gi|659111808|ref|XP_008455917.1| (PREDICTED: uncharacterized protein LOC103495987 isoform X1 [Cucumis melo])

HSP 1 Score: 189.1 bits (479), Expect = 4.1e-45
Identity = 98/109 (89.91%), Postives = 102/109 (93.58%), Query Frame = 1


Query: 2   TGINEETEKSFAELLSEELKLREAEALESHRLADISLLEAKKMTSQYQKEADKCNSGMET 61
           +G+NEETEK+FAELLSEELKLREAEALE+HR ADISLLEAKKMTSQYQKEADKCNSGMET
Sbjct: 85  SGMNEETEKNFAELLSEELKLREAEALENHRRADISLLEAKKMTSQYQKEADKCNSGMET 144

Query: 62  CEAARERAEATLASQKRLTALWETRARQRGWRDDIVRSRAQTHGTVQTS 111
           CEAARERAEATLASQKRLT LWETRARQRGWRDDIV SR    GTVQTS
Sbjct: 145 CEAARERAEATLASQKRLTTLWETRARQRGWRDDIVTSR----GTVQTS 189

[Close]

BLAST of ClCG02G009050.1 vs. NCBI nr
Match: gi|449468378|ref|XP_004151898.1| (PREDICTED: uncharacterized protein LOC101219040 isoform X1 [Cucumis sativus])

HSP 1 Score: 185.7 bits (470), Expect = 4.5e-44
Identity = 96/109 (88.07%), Postives = 102/109 (93.58%), Query Frame = 1


Query: 2   TGINEETEKSFAELLSEELKLREAEALESHRLADISLLEAKKMTSQYQKEADKCNSGMET 61
           +G+NEETEK+FAELLSEELKLREAEALE+HR ADISLLEAKKMTSQYQKEADKCNSGMET
Sbjct: 85  SGMNEETEKNFAELLSEELKLREAEALENHRRADISLLEAKKMTSQYQKEADKCNSGMET 144

Query: 62  CEAARERAEATLASQKRLTALWETRARQRGWRDDIVRSRAQTHGTVQTS 111
           CEAARERAEATLASQKRLTALWETRARQRGWRD+IV SR    GT+Q S
Sbjct: 145 CEAARERAEATLASQKRLTALWETRARQRGWRDNIVTSR----GTIQGS 189

[Close]

BLAST of ClCG02G009050.1 vs. NCBI nr
Match: gi|449468380|ref|XP_004151899.1| (PREDICTED: uncharacterized protein LOC101219040 isoform X2 [Cucumis sativus])

HSP 1 Score: 185.7 bits (470), Expect = 4.5e-44
Identity = 96/109 (88.07%), Postives = 102/109 (93.58%), Query Frame = 1


Query: 2   TGINEETEKSFAELLSEELKLREAEALESHRLADISLLEAKKMTSQYQKEADKCNSGMET 61
           +G+NEETEK+FAELLSEELKLREAEALE+HR ADISLLEAKKMTSQYQKEADKCNSGMET
Sbjct: 77  SGMNEETEKNFAELLSEELKLREAEALENHRRADISLLEAKKMTSQYQKEADKCNSGMET 136

Query: 62  CEAARERAEATLASQKRLTALWETRARQRGWRDDIVRSRAQTHGTVQTS 111
           CEAARERAEATLASQKRLTALWETRARQRGWRD+IV SR    GT+Q S
Sbjct: 137 CEAARERAEATLASQKRLTALWETRARQRGWRDNIVTSR----GTIQGS 181

[Close]

BLAST of ClCG02G009050.1 vs. NCBI nr
Match: gi|255576895|ref|XP_002529333.1| (PREDICTED: uncharacterized protein LOC8276185 [Ricinus communis])

HSP 1 Score: 166.0 bits (419), Expect = 3.7e-38
Identity = 79/107 (73.83%), Postives = 97/107 (90.65%), Query Frame = 1


Query: 3   GINEETEKSFAELLSEELKLREAEALESHRLADISLLEAKKMTSQYQKEADKCNSGMETC 62
           G++E+TEK+FA+LL+EELKLREAEALE+ R AD++LLEAKKMTSQYQKEADKCNSGMETC
Sbjct: 81  GVSEDTEKNFADLLTEELKLREAEALENQRHADMALLEAKKMTSQYQKEADKCNSGMETC 140

Query: 63  EAARERAEATLASQKRLTALWETRARQRGWRDDIVRSRAQTHGTVQT 110
           E ARE++EATLA+QK+LTALWE+RARQRGW++   RS AQ+ G V +
Sbjct: 141 EEAREKSEATLAAQKKLTALWESRARQRGWKEGAARSHAQSQGNVDS 187

The following BLAST results are available for this feature:

BLAST of ClCG02G009050.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQC2_CUCSA	3.1e-44	88.07	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G416150 PE=4 SV=1	[more]
B9STL4_RICCO	2.6e-38	73.83	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1016720 PE=4 SV=1	[more]
A0A067DFQ5_CITSI	2.2e-37	74.29	Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g036708mg PE=4 S...	[more]
V4W4A9_9ROSI	2.2e-37	74.29	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016847mg PE=4 SV=1	[more]
A0A067KEV8_JATCU	4.8e-37	78.79	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13718 PE=4 SV=1	[more]

BLAST of ClCG02G009050.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G05070.1	3.7e-36	64.49	Protein of unknown function (DUF1068)	[more]
AT2G32580.1	1.9e-32	62.00	Protein of unknown function (DUF1068)	[more]
AT4G04360.1	8.2e-28	62.11	Protein of unknown function (DUF1068)	[more]
AT4G30996.1	8.5e-25	55.43	Protein of unknown function (DUF1068)	[more]
AT2G24290.1	3.2e-24	55.43	Protein of unknown function (DUF1068)	[more]

BLAST of ClCG02G009050.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659111810\|ref\|XP_008455918.1\|	4.1e-45	89.91	PREDICTED: uncharacterized protein LOC103495987 isoform X2 [Cucumis melo]	[more]
gi\|659111808\|ref\|XP_008455917.1\|	4.1e-45	89.91	PREDICTED: uncharacterized protein LOC103495987 isoform X1 [Cucumis melo]	[more]
gi\|449468378\|ref\|XP_004151898.1\|	4.5e-44	88.07	PREDICTED: uncharacterized protein LOC101219040 isoform X1 [Cucumis sativus]	[more]
gi\|449468380\|ref\|XP_004151899.1\|	4.5e-44	88.07	PREDICTED: uncharacterized protein LOC101219040 isoform X2 [Cucumis sativus]	[more]
gi\|255576895\|ref\|XP_002529333.1\|	3.7e-38	73.83	PREDICTED: uncharacterized protein LOC8276185 [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR010471	DUF1068

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
ClCG02G009050	ClCG02G009050	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
ClCG02G009050.1	ClCG02G009050.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG02G009050.1.cds1	ClCG02G009050.1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010471	Protein of unknown function DUF1068	PFAM	PF06364	DUF1068	coord: 4..94 score: 9.1
None	No IPR available	unknown	Coil	Coil	coord: 59..79 scor
None	No IPR available	PANTHER	PTHR32254	FAMILY NOT NAMED	coord: 4..110 score: 1.1