ClCG06G004100 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG06G004100
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Unknown protein
Location	CG_Chr06 : 4675522 .. 4675860 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGCTCGTTCGCGGGGAGGCTTGAGAACTTTGGTCCCCTTGAAGACGCAGCCTTTCTATTTCGTAATATTGCTGATGAAGCCGACGTTAAAGTCACATACAAGCGGTTCTCGTTAGTCACCTCCAGCCGTCATACGCCCTTTCGCTTCGTAGCAGAACTCCATATTTTGCCCCATTTTTTCGCCCACTATTCTATTGGTATCCATCGGAATATCAATTCAAGCATTTCTCTCCCACTTTTCCATACATTTATTCGGAACGCTAGAAATTATTATTCTCAATTGACCATCCTTATGGAACCACAAGTCATGGCCCTTAAATTTCGTAATTTCAGTTAG

mRNA sequence

ATGCGCTCGTTCGCGGGGAGGCTTGAGAACTTTGGTCCCCTTGAAGACGCAGCCTTTCTATTTCGTAATATTGCTGATGAAGCCGACGTTAAAGTCACATACAAGCGGTTCTCGTTAGTCACCTCCAGCCGTCATACGCCCTTTCGCTTCGTAGCAGAACTCCATATTTTGCCCCATTTTTTCGCCCACTATTCTATTGGTATCCATCGGAATATCAATTCAAGCATTTCTCTCCCACTTTTCCATACATTTATTCGGAACGCTAGAAATTATTATTCTCAATTGACCATCCTTATGGAACCACAAGTCATGGCCCTTAAATTTCGTAATTTCAGTTAG

Coding sequence (CDS)

ATGCGCTCGTTCGCGGGGAGGCTTGAGAACTTTGGTCCCCTTGAAGACGCAGCCTTTCTATTTCGTAATATTGCTGATGAAGCCGACGTTAAAGTCACATACAAGCGGTTCTCGTTAGTCACCTCCAGCCGTCATACGCCCTTTCGCTTCGTAGCAGAACTCCATATTTTGCCCCATTTTTTCGCCCACTATTCTATTGGTATCCATCGGAATATCAATTCAAGCATTTCTCTCCCACTTTTCCATACATTTATTCGGAACGCTAGAAATTATTATTCTCAATTGACCATCCTTATGGAACCACAAGTCATGGCCCTTAAATTTCGTAATTTCAGTTAG

Protein sequence

MRSFAGRLENFGPLEDAAFLFRNIADEADVKVTYKRFSLVTSSRHTPFRFVAELHILPHFFAHYSIGIHRNINSSISLPLFHTFIRNARNYYSQLTILMEPQVMALKFRNFS

Homology

[Close]

BLAST of ClCG06G004100 vs. TrEMBL
Match: A0A0A0KB79_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G002360 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.8e-07
Identity = 40/84 (47.62%), Postives = 50/84 (59.52%), Query Frame = 1


Query: 8  LENFGPLEDAAFLFRNIADEADVKVTYKRFSLV-TSSRHTPFRFVAELHILPHFFAHYSI 67
          ++NF PL DAA L  NIA EADV+++  +FS++ T   H    FVA LHI   FFA+Y I
Sbjct: 11 IDNFSPLADAAALLTNIAHEADVEISRTQFSIIATGYSHW---FVASLHIWEPFFANYYI 70

Query: 68 GIHRNINSSISLPLFHTFIRNARN 91
               I S ISLP  H  +  ARN
Sbjct: 71 D-EDPITSRISLPALHHSLNRARN 90

[Close]

BLAST of ClCG06G004100 vs. NCBI nr
Match: gi|659116796|ref|XP_008458264.1| (PREDICTED: uncharacterized protein LOC103497732 [Cucumis melo])

HSP 1 Score: 68.6 bits (166), Expect = 8.2e-09
Identity = 47/106 (44.34%), Postives = 62/106 (58.49%), Query Frame = 1


Query: 8   LENFGPLEDAAFLFRNIADEADVKVTYKRFSLVTSSRHTPFRFVAELHILPHFFAHYSIG 67
           L NF PL DAA LF NI  EADVKV+  + S++T+ R     FVA LHI   FF  Y   
Sbjct: 9   LHNFAPLADAAALFSNIFYEADVKVSRTQLSMITADRSR--WFVAVLHIWEPFFNDYY-- 68

Query: 68  IHRNINSSISLPLFHTFIRNAR-NYYSQLTILMEP--QVMALKFRN 111
           I ++I S ISLP FH  +  AR ++ S + I M+     + L+F+N
Sbjct: 69  IDKDITSRISLPTFHCHMNRARKDHCSSMNIRMQKGHNYLFLEFKN 110

[Close]

BLAST of ClCG06G004100 vs. NCBI nr
Match: gi|700190438|gb|KGN45642.1| (hypothetical protein Csa_6G002360 [Cucumis sativus])

HSP 1 Score: 63.5 bits (153), Expect = 2.6e-07
Identity = 40/84 (47.62%), Postives = 50/84 (59.52%), Query Frame = 1


Query: 8  LENFGPLEDAAFLFRNIADEADVKVTYKRFSLV-TSSRHTPFRFVAELHILPHFFAHYSI 67
          ++NF PL DAA L  NIA EADV+++  +FS++ T   H    FVA LHI   FFA+Y I
Sbjct: 11 IDNFSPLADAAALLTNIAHEADVEISRTQFSIIATGYSHW---FVASLHIWEPFFANYYI 70

Query: 68 GIHRNINSSISLPLFHTFIRNARN 91
               I S ISLP  H  +  ARN
Sbjct: 71 D-EDPITSRISLPALHHSLNRARN 90

The following BLAST results are available for this feature:

BLAST of ClCG06G004100 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KB79_CUCSA	1.8e-07	47.62	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G002360 PE=4 SV=1	[more]

BLAST of ClCG06G004100 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659116796\|ref\|XP_008458264.1\|	8.2e-09	44.34	PREDICTED: uncharacterized protein LOC103497732 [Cucumis melo]	[more]
gi\|700190438\|gb\|KGN45642.1\|	2.6e-07	47.62	hypothetical protein Csa_6G002360 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG06G004100.1	ClCG06G004100.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG06G004100	Cucurbita pepo (Zucchini)	cpewcgB144
ClCG06G004100	Bottle gourd (USVL1VR-Ls)	lsiwcgB029
ClCG06G004100	Cucumber (Gy14) v2	cgybwcgB443
ClCG06G004100	Melon (DHL92) v3.6.1	medwcgB119
ClCG06G004100	Silver-seed gourd	carwcgB0073
ClCG06G004100	Cucumber (Chinese Long) v3	cucwcgB502
ClCG06G004100	Watermelon (97103) v2	wcgwmbB273
ClCG06G004100	Cucumber (Gy14) v1	cgywcgB228
ClCG06G004100	Cucurbita maxima (Rimu)	cmawcgB328
ClCG06G004100	Cucurbita moschata (Rifu)	cmowcgB325
ClCG06G004100	Wild cucumber (PI 183967)	cpiwcgB507
ClCG06G004100	Cucumber (Chinese Long) v2	cuwcgB480
ClCG06G004100	Melon (DHL92) v3.5.1	mewcgB124
ClCG06G004100	Watermelon (97103) v1	wcgwmB344