ClCG06G009160 (gene) Watermelon (Charleston Gray)
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGTGGATGTTTTATTTATTTGTGTAGGAACAACGGGGTGGAGTTTGGAGCTTGTGCTGTATCTTTTTTTTTCCTTGTAGTAGCATTTTGCTTGTTCAACCCTGTTTTCTATTTGTTTTTACTAATCTTGATGTCTATTTGTTCAGGATTCAATTAGCTTAGTGGAGACTGTTCATAATGTAAAGTATGTTTAAACTCTCGTGAGATTAAGCCATCTTCTTCCCTTCCTATTTTCATTTTGTAGAATTTTGTAATTGTATAATCTTTACATTGTACTTTACGGTACATGTCCATAGGGAATTTTCGATTACCAATGTGACTGGCAGCTACCGGAGAGTTTTTCAAAGACCAAAGGACTATGAGTGGTACTCTCTTTAAGTTGTTAAATTATGAATTCCTAGCATTTATCTATTTGTTAGAAGATTAAATTCTGTTGTTTGGCAGGGAATTGATCTCATATGTTGATCGTAATTTACCCCTGGCTCAGAGCGATTTACATAACCTTTTAAAGTCTCAAAGTGTTGAAATTAGTAAGGAAGAAAAGATAGCCGATAAATCTAAAAATGAAGATCTATTGGATTCCACAGAAGAATCAGGGTGCTGTAAAAAGAATGTTCAACTTGAAGCAGGTGAAAATGAAAATGAAAACGAAAATGAAAGTGGGCAAGGCACTCAGGATCCTCAGATGGCTCTCAAGTTGAGCTTTACTCTCCCCGCGTCTTCTTATGCTACTATGGCAATTAGAGAATTGCTGAAAACATCAACTTCTGTGAGATCCGTTTTGTCCCTTTTTCATTACTAG ATGGATTCAATTAGCTTAGTGGAGACTGTTCATAATGTAAAGGAATTTTCGATTACCAATGTGACTGGCAGCTACCGGAGAGTTTTTCAAAGACCAAAGGACTATGAGTGGGAATTGATCTCATATGTTGATCGTAATTTACCCCTGGCTCAGAGCGATTTACATAACCTTTTAAAGTCTCAAAGTGTTGAAATTAGTAAGGAAGAAAAGATAGCCGATAAATCTAAAAATGAAGATCTATTGGATTCCACAGAAGAATCAGGGTGCTGTAAAAAGAATGTTCAACTTGAAGCAGGTGAAAATGAAAATGAAAACGAAAATGAAAGTGGGCAAGGCACTCAGGATCCTCAGATGGCTCTCAAGTTGAGCTTTACTCTCCCCGCGTCTTCTTATGCTACTATGGCAATTAGAGAATTGCTGAAAACATCAACTTCTGTGAGATCCGTTTTGTCCCTTTTTCATTACTAG ATGGATTCAATTAGCTTAGTGGAGACTGTTCATAATGTAAAGGAATTTTCGATTACCAATGTGACTGGCAGCTACCGGAGAGTTTTTCAAAGACCAAAGGACTATGAGTGGGAATTGATCTCATATGTTGATCGTAATTTACCCCTGGCTCAGAGCGATTTACATAACCTTTTAAAGTCTCAAAGTGTTGAAATTAGTAAGGAAGAAAAGATAGCCGATAAATCTAAAAATGAAGATCTATTGGATTCCACAGAAGAATCAGGGTGCTGTAAAAAGAATGTTCAACTTGAAGCAGGTGAAAATGAAAATGAAAACGAAAATGAAAGTGGGCAAGGCACTCAGGATCCTCAGATGGCTCTCAAGTTGAGCTTTACTCTCCCCGCGTCTTCTTATGCTACTATGGCAATTAGAGAATTGCTGAAAACATCAACTTCTGTGAGATCCGTTTTGTCCCTTTTTCATTACTAG MDSISLVETVHNVKEFSITNVTGSYRRVFQRPKDYEWELISYVDRNLPLAQSDLHNLLKSQSVEISKEEKIADKSKNEDLLDSTEESGCCKKNVQLEAGENENENENESGQGTQDPQMALKLSFTLPASSYATMAIRELLKTSTSVRSVLSLFHY
BLAST of ClCG06G009160 vs. TrEMBL
Match: A0A0A0LYD2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G690350 PE=4 SV=1) HSP 1 Score: 250.0 bits (637), Expect = 1.9e-63 Identity = 128/144 (88.89%), Postives = 134/144 (93.06%), Query Frame = 1
BLAST of ClCG06G009160 vs. TrEMBL
Match: U5GGM8_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s05300g PE=4 SV=1) HSP 1 Score: 156.4 bits (394), Expect = 2.9e-35 Identity = 83/150 (55.33%), Postives = 106/150 (70.67%), Query Frame = 1
BLAST of ClCG06G009160 vs. TrEMBL
Match: W9QVC1_9ROSA (Multisubstrate pseudouridine synthase 7 OS=Morus notabilis GN=L484_006163 PE=4 SV=1) HSP 1 Score: 151.8 bits (382), Expect = 7.1e-34 Identity = 79/148 (53.38%), Postives = 104/148 (70.27%), Query Frame = 1
BLAST of ClCG06G009160 vs. TrEMBL
Match: A0A067DBE6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g009530mg PE=4 SV=1) HSP 1 Score: 147.9 bits (372), Expect = 1.0e-32 Identity = 78/154 (50.65%), Postives = 105/154 (68.18%), Query Frame = 1
BLAST of ClCG06G009160 vs. TrEMBL
Match: V4V316_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10003382mg PE=4 SV=1) HSP 1 Score: 146.4 bits (368), Expect = 3.0e-32 Identity = 78/159 (49.06%), Postives = 104/159 (65.41%), Query Frame = 1
BLAST of ClCG06G009160 vs. TAIR10
Match: AT3G04820.1 (AT3G04820.1 Pseudouridine synthase family protein) HSP 1 Score: 136.0 bits (341), Expect = 2.0e-32 Identity = 74/146 (50.68%), Postives = 97/146 (66.44%), Query Frame = 1
BLAST of ClCG06G009160 vs. NCBI nr
Match: gi|778664378|ref|XP_011660284.1| (PREDICTED: pseudouridylate synthase 7 homolog [Cucumis sativus]) HSP 1 Score: 251.5 bits (641), Expect = 9.4e-64 Identity = 129/145 (88.97%), Postives = 135/145 (93.10%), Query Frame = 1
BLAST of ClCG06G009160 vs. NCBI nr
Match: gi|700211702|gb|KGN66798.1| (hypothetical protein Csa_1G690350 [Cucumis sativus]) HSP 1 Score: 250.0 bits (637), Expect = 2.7e-63 Identity = 128/144 (88.89%), Postives = 134/144 (93.06%), Query Frame = 1
BLAST of ClCG06G009160 vs. NCBI nr
Match: gi|659125508|ref|XP_008462718.1| (PREDICTED: pseudouridylate synthase 7 homolog isoform X2 [Cucumis melo]) HSP 1 Score: 238.4 bits (607), Expect = 8.2e-60 Identity = 124/145 (85.52%), Postives = 132/145 (91.03%), Query Frame = 1
BLAST of ClCG06G009160 vs. NCBI nr
Match: gi|659125504|ref|XP_008462716.1| (PREDICTED: pseudouridylate synthase 7 homolog isoform X1 [Cucumis melo]) HSP 1 Score: 238.4 bits (607), Expect = 8.2e-60 Identity = 124/145 (85.52%), Postives = 132/145 (91.03%), Query Frame = 1
BLAST of ClCG06G009160 vs. NCBI nr
Match: gi|743866321|ref|XP_011032429.1| (PREDICTED: multisubstrate pseudouridine synthase 7 isoform X1 [Populus euphratica]) HSP 1 Score: 158.3 bits (399), Expect = 1.1e-35 Identity = 84/150 (56.00%), Postives = 107/150 (71.33%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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