ClCG05G008960 (gene) Watermelon (Charleston Gray)

NameClCG05G008960
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr05 : 9811737 .. 9815685 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CAGAGACCAGATTGAGAGCTTGCGCAACAAACCCACATCAGGTTCCGCTTTATCTTTCATTCAACCAAAGTTTTTTGGTCTGAAATTGTTGTGTTCATATGGAAAGTTTCTAGATTTGCAACATCATCTCTATTTTACAACTCAATGTGAAAGAAAACAAATAAGGGAAGTGATTCTTTTTTGGGTTTTGCAGCTGCAACTTCTTCGGCTCTGAGTGAAAAAGAAATGGGATTTTTTGCTGAAAATGTGAAGAAGAAGAAGAAACAGAACTGAAGTTTGCCTTTTTTCTCAACACCCTCTTCTTATTTCCAGACTTCTATTCTGTTGTTTTTCCAAAAAACTTCTGTTCTGATGAAACTGGATCAGCTCGACAATTCTAAAGTACCTAAAGATGAAATGCAAGATGGAGGGCTTTCACTTGAAGATCCAATTAATCTTCATTCCAAGGTTCCACTAGTTACTTTAACATGTTTATTGGATTCTGAGTTTAATGAGAAAAGTTATAAAGTTGTTGTGTTCATTTGGTTCATGCAGAAACTTCAAGATGATTTGCAAACAATGGGGATGAAAATCCAGCTGCATGAGGACAACATAAGATTTCTAAGGACTTTGAAAGACAAATTAGTTGATTCCATCATTGATCTGCAAGGTATTCTCTTTTTTAGATTTTTAAGACATTTTATGTCTTTTCCATTACTTAGACAAGTTTTTATTACAGTTATCCTAGGAAAGTACCATGCTTCCAATACACCTAAGATTGAGAATAAGGATGGTTCTGATACTCAAAGTGAAGATAAGCCATCAGATCAGAAACAGATACTACTACAGGAAAACACTGCTGCTAGCATTTTGTGCCACCTGAAAACTAACCCAAAGATGCTGGCTTCTGACCCTACATTGAGTGATGATGTGCTAGGTGTTGTTGCTGAACTAGGAAATGTAGATGACAATACCCTTAACAGGTCTCTTTTGCTTCCTTACATTTGCTTCTCATCTTTCAAGTAATTATAGTCTCAACTCTCGTGTTAATTTGCACTGATTTGCATTGTTATGAGATCGAGAAACAAAGAAAACAAAAAACGAGAAATTCATAGGTTCACGAAGTGTGTTAGTTATATCCATGGCCAGCAAGACCACGTGCTTGGTCGTTCGGAACACCAGATAACAAATTGCATTCCAACATGCATAAACTTTTTCTTCTTTGAAAGTGAATGTTCAATGACAATGGCATTAGCCTTGGGGATGGGATCATCTAGGGTGCTTGATGGCAGAGCCAAACATGAGATTTGAGCAAACTAGCTAAATTCATTTTAGGTTATGTTATCATTTTAGTCTATGGTTTTCATTTGAAATGTATTAGAAGTATCGATTACTTGTCCCGTTGTCTTGGTTAAATCCCTCAAAATATCCTTAGAAATTACAATATTTGACATGTGCTTTTGGATGTGGTAGTGAGATGATGGGCTCTAATATTCAGTGTATGGTATAGCACGTCGAAGAAAATTTTTAACAATGACATTACATGAGATTTAACCAAACTACAAGGACCAAATTGAAAACTTACGAACCACATGGTCTGCAGTTGTATAACCTTCATTTTGTTACTAACATTTTGCTTCTATCTTTTAGTAAATTCCCAAGTCGAATTTGCGCTTAAAGATAAGGTGTTTCATAGCTCAAGATTTTAGTTTGTTCTTAGCAATAGATTAGCAGATATGGTCAGTTTAACGAGAGGTGGATATTGGGTTTTGTTCATTTTAGTGATTTTTAGGAGAATAACTCACATTTGAAGATAGTTAACGAAGAACGTGGCTGACTGGCCGTTCTATACTTTCATCTACATGTTTTTCTTTATCCTCTACTTTTCTGTTTCTGGTTTGGAGGACAGCCTTTTATCGGAGTACCTAGGAACAGAGACCATGTTGGCTATTGTCTGCAAGACGTACAATGGAGTCAAAGCTCTAGAAAAGTATGACACAGAAGGATGCATAAATAAAACATCCGGGCTTCACGGATTTGGCACTTCACTTGGGAAAACTTTAGAGGGGCGGTTCAATGTCATCTCTCTTGAAACATTAAGGTATTCGTTTCTGACATGGTGTGGTTATTTGGACATTCTTGATTCTGGCACATAAATATTGTGGCACCCTTCTCTTACCGAGAATTCATCACTCTTTTTTTTTTTTTTTTTTTTCCTGCAGACCATATGCTGGTGAATTTGTGGCCGATGATCTGCAAAAAAGGCTTGATATTCCAAATCCAAGATTGCGTAATGGGGACTGTCCAGCCGGTTTTCTTGGTTATGCTGTTAATATGATAAACATAGACAGAACACACTTGTTTTTTCTCACAGCAAGTGGATATGGTCTTAGAGAGACTCTATTTTATTCTCTATTTTCTTGCCTGCAAATCTATAAAACTAGGGCAGAAATGTTACAAGCTGTTCCTTGCATAACCAACGGAGCAATTTCTTTGGATGGCGGGATTATCAAGAAGAGTGGACTGTTTTGTCTTGGCAGTAGGTACTAACTGCTTCTTGACAACTTCAATGATTGCTCGGTTATGGATTTGAATCTCTACCCATGGTCATTGTCCCAACACTTGGGGTTTCTCTGTTTAAGATTATTTACTTTTATGCCTGCTAACCGTGTTAGGGACGACATGAAGGTGAGCTTTTCCAAGACCTCAACAAATTCAAGCCTACCTGACCATTACACAGAATCTGAAAGACAGATGAAAGAAATGAAATGGAAAAAGGAAAAGATACTGGAAGATATGAGGAGAGAACAAGCGTTGCTAGATAGCATGAAGCTCAACTTCGAAAAAAAGAAGGCGGAGTTTGTGCAGTTCCTAGCTGAAGCTGCTAATCGGGTAAGCTCCAAACCAACTTAACAAACATGATGAACTATAAAAAATGGCTTTGCATTTTACATCAATTTGCAACAACCTAGCTTCTGTATTTTGATTTTCTTTGGCATTATTTACTTTATTTTGTGTTTCCTTGTACCGGAATCTTGTTCCTGTGAAACGGCCATCATTAAACTGTTGAATGAGTTAGTTGGAAATTCGGAATAAACCGTGTTCTATTCAAACGGTCACTAACTGTCTTTGCCTTGAATGATCTGATATCCTAGAATAAGTTCTGATATAAGACATAAGGTGCTATTGTCTCTTCTGAACTTGCATGAGTATTTTACAAAGTCAGTTTCTTGCTGCCAATTCCTTTACAAGTCCAATGTGGCTACTGTCATGTATTCTTTAGTCTTCTAACTTGTAGATTGTTCATCAAATCAAGTCATTTCTTACATAATGGCAGCAACAAACTCCAGTTGCAATGGGGAGACCAGCTGGTAGGTGATGCTGGAACACAGAAGGATCGGCCAATCATCGAAGGGATGGCTAAATTTGTCAGGGACGATGCTCGTTGTTGTCGTTCACATTCCACTAGATGAATTGGTCTATTGTATAATATGCATCAGTGTTGGAAAGGTGTCAGCTTTTTCGGAGGAGGAAGGAAATGAGAATGTTTTGCAATACCAATTTTGTGTTGTGAAGTTGATAGTGGTTTCGCATGACCATGTATGTAACGTATCAAGCTTCCTTTGACAGCTCTATGATGTTGCTTGCTTCGGTCTATGCCTTCTGCCTTCTCTTTTATGGGCTATTTATCTGCATGAGCTCATTAAACCCAAATTAATTTCGTTGGAGATAGGAATGCAGGATGCATTACTATTCTGGGACTGTTTGAGGCGATGAATTGGTTATTATAGTCGGTGGTCATTATAGGAGAGAAAAAGAGTTTTCAAATAGTTTTAGAATAATTAAATGTGAGTTATAATAATTGAGAACTCCAACTAAGGCAAGTTGGGAGTTCAAATGCTCCCTAAGTTTTAAATTCTATATTGGTAGAATTCTTAAATTTTATTTTTCAAACTTTTGGAAGTTGTAG

mRNA sequence

CAGAGACCAGATTGAGAGCTTGCGCAACAAACCCACATCAGCTGCAACTTCTTCGGCTCTGAGTGAAAAAGAAATGGGATTTTTTGCTGAAAATGTGAAGAAGAAGAAGAAACAGAACTGAAGTTTGCCTTTTTTCTCAACACCCTCTTCTTATTTCCAGACTTCTATTCTGTTGTTTTTCCAAAAAACTTCTGTTCTGATGAAACTGGATCAGCTCGACAATTCTAAAGTACCTAAAGATGAAATGCAAGATGGAGGGCTTTCACTTGAAGATCCAATTAATCTTCATTCCAAGAAACTTCAAGATGATTTGCAAACAATGGGGATGAAAATCCAGCTGCATGAGGACAACATAAGATTTCTAAGGACTTTGAAAGACAAATTAGTTGATTCCATCATTGATCTGCAAGTTATCCTAGGAAAGTACCATGCTTCCAATACACCTAAGATTGAGAATAAGGATGGTTCTGATACTCAAAGTGAAGATAAGCCATCAGATCAGAAACAGATACTACTACAGGAAAACACTGCTGCTAGCATTTTGTGCCACCTGAAAACTAACCCAAAGATGCTGGCTTCTGACCCTACATTGAGTGATGATGTGCTAGGTGTTGTTGCTGAACTAGGAAATGTAGATGACAATACCCTTAACAGCCTTTTATCGGAGTACCTAGGAACAGAGACCATGTTGGCTATTGTCTGCAAGACGTACAATGGAGTCAAAGCTCTAGAAAAGTATGACACAGAAGGATGCATAAATAAAACATCCGGGCTTCACGGATTTGGCACTTCACTTGGGAAAACTTTAGAGGGGCGGTTCAATGTCATCTCTCTTGAAACATTAAGACCATATGCTGGTGAATTTGTGGCCGATGATCTGCAAAAAAGGCTTGATATTCCAAATCCAAGATTGCGTAATGGGGACTGTCCAGCCGGTTTTCTTGGTTATGCTGTTAATATGATAAACATAGACAGAACACACTTGTTTTTTCTCACAGCAAGTGGATATGGTCTTAGAGAGACTCTATTTTATTCTCTATTTTCTTGCCTGCAAATCTATAAAACTAGGGCAGAAATGTTACAAGCTGTTCCTTGCATAACCAACGGAGCAATTTCTTTGGATGGCGGGATTATCAAGAAGAGTGGACTGTTTTGTCTTGGCAGTAGGGACGACATGAAGGTGAGCTTTTCCAAGACCTCAACAAATTCAAGCCTACCTGACCATTACACAGAATCTGAAAGACAGATGAAAGAAATGAAATGGAAAAAGGAAAAGATACTGGAAGATATGAGGAGAGAACAAGCGTTGCTAGATAGCATGAAGCTCAACTTCGAAAAAAAGAAGGCGGAGTTTGTGCAGTTCCTAGCTGAAGCTGCTAATCGGCAACAAACTCCAGTTGCAATGGGGAGACCAGCTGGTAGGTGATGCTGGAACACAGAAGGATCGGCCAATCATCGAAGGGATGGCTAAATTTGTCAGGGACGATGCTCGTTGTTGTCGTTCACATTCCACTAGATGAATTGGTCTATTGTATAATATGCATCAGTGTTGGAAAGGTGTCAGCTTTTTCGGAGGAGGAAGGAAATGAGAATGTTTTGCAATACCAATTTTGTGTTGTGAAGTTGATAGTGGTTTCGCATGACCATTTGTAG

Coding sequence (CDS)

ATGCTGGAACACAGAAGGATCGGCCAATCATCGAAGGGATGGCTAAATTTGTCAGGGACGATGCTCGTTGTTGTCGTTCACATTCCACTAGATGAATTGGTCTATTGTATAATATGCATCAGTGTTGGAAAGGTGTCAGCTTTTTCGGAGGAGGAAGGAAATGAGAATGTTTTGCAATACCAATTTTGTGTTGTGAAGTTGATAGTGGTTTCGCATGACCATTTGTAG

Protein sequence

MLEHRRIGQSSKGWLNLSGTMLVVVVHIPLDELVYCIICISVGKVSAFSEEEGNENVLQYQFCVVKLIVVSHDHL
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0070921 regulation of production of siRNA involved in chromatin silencing by small RNA
biological_process GO:0080188 RNA-directed DNA methylation
cellular_component GO:0005575 cellular_component
cellular_component GO:0000419 DNA-directed RNA polymerase V complex
molecular_function GO:0003674 molecular_function
molecular_function GO:0042803 protein homodimerization activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG05G008960.1ClCG05G008960.1mRNA


The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG05G008960Lsi05G001050Bottle gourd (USVL1VR-Ls)lsiwcgB332
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG05G008960Silver-seed gourdcarwcgB0495
ClCG05G008960Silver-seed gourdcarwcgB0524
ClCG05G008960Silver-seed gourdcarwcgB0525
ClCG05G008960Silver-seed gourdcarwcgB0965
ClCG05G008960Cucumber (Chinese Long) v3cucwcgB238
ClCG05G008960Cucumber (Chinese Long) v3cucwcgB245
ClCG05G008960Cucumber (Chinese Long) v3cucwcgB417
ClCG05G008960Watermelon (97103) v2wcgwmbB213
ClCG05G008960Watermelon (97103) v2wcgwmbB229
ClCG05G008960Watermelon (97103) v2wcgwmbB231
ClCG05G008960Wax gourdwcgwgoB413
ClCG05G008960Wax gourdwcgwgoB427
ClCG05G008960Wax gourdwcgwgoB437
ClCG05G008960Watermelon (Charleston Gray)wcgwcgB099
ClCG05G008960Watermelon (Charleston Gray)wcgwcgB154
ClCG05G008960Cucumber (Gy14) v1cgywcgB003
ClCG05G008960Cucumber (Gy14) v1cgywcgB376
ClCG05G008960Cucumber (Gy14) v1cgywcgB449
ClCG05G008960Cucurbita maxima (Rimu)cmawcgB266
ClCG05G008960Cucurbita maxima (Rimu)cmawcgB296
ClCG05G008960Cucurbita maxima (Rimu)cmawcgB365
ClCG05G008960Cucurbita maxima (Rimu)cmawcgB368
ClCG05G008960Cucurbita maxima (Rimu)cmawcgB559
ClCG05G008960Cucurbita moschata (Rifu)cmowcgB256
ClCG05G008960Cucurbita moschata (Rifu)cmowcgB290
ClCG05G008960Cucurbita moschata (Rifu)cmowcgB359
ClCG05G008960Cucurbita moschata (Rifu)cmowcgB362
ClCG05G008960Cucurbita moschata (Rifu)cmowcgB557
ClCG05G008960Wild cucumber (PI 183967)cpiwcgB237
ClCG05G008960Wild cucumber (PI 183967)cpiwcgB246
ClCG05G008960Wild cucumber (PI 183967)cpiwcgB413
ClCG05G008960Cucumber (Chinese Long) v2cuwcgB230
ClCG05G008960Cucumber (Chinese Long) v2cuwcgB238
ClCG05G008960Cucumber (Chinese Long) v2cuwcgB395
ClCG05G008960Melon (DHL92) v3.5.1mewcgB026
ClCG05G008960Melon (DHL92) v3.5.1mewcgB427
ClCG05G008960Melon (DHL92) v3.5.1mewcgB430
ClCG05G008960Watermelon (97103) v1wcgwmB286
ClCG05G008960Watermelon (97103) v1wcgwmB291
ClCG05G008960Watermelon (97103) v1wcgwmB299
ClCG05G008960Cucurbita pepo (Zucchini)cpewcgB043
ClCG05G008960Cucurbita pepo (Zucchini)cpewcgB046
ClCG05G008960Cucurbita pepo (Zucchini)cpewcgB173
ClCG05G008960Cucurbita pepo (Zucchini)cpewcgB207
ClCG05G008960Cucurbita pepo (Zucchini)cpewcgB678
ClCG05G008960Bottle gourd (USVL1VR-Ls)lsiwcgB021
ClCG05G008960Bottle gourd (USVL1VR-Ls)lsiwcgB334
ClCG05G008960Cucumber (Gy14) v2cgybwcgB214
ClCG05G008960Cucumber (Gy14) v2cgybwcgB221
ClCG05G008960Cucumber (Gy14) v2cgybwcgB361
ClCG05G008960Melon (DHL92) v3.6.1medwcgB024
ClCG05G008960Melon (DHL92) v3.6.1medwcgB417
ClCG05G008960Melon (DHL92) v3.6.1medwcgB428