ClCG04G003880 (gene) Watermelon (Charleston Gray)
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGTTCCAAGTATCATCCCTAAATCTTTTGTCTTTGATTCTGTTCCAATCTGGATTAAACTTGCTCAAATTTTTTTGGAGATGCAGATGGATAAAGGGCTAGTTGTGATAGCTAGTGCAGTAGGCAATCCAGTTGCTTTAGATATTGCCATTAAGGAGAAAAGAAGGTTGTCGTTTGTTAGGGTTTGTATGGAGGCAGGGGATTCTGTGATGCCGCCCTCAGTGACGGTCTAGATTAGGGGCTAGGATTTTGTTGTGTCAGTTACCTATGACTAGAAGCCAAGAAAATGCCAGAAGTGTTCATCTTTTGGGCATAGGGGAGATCAATGTAAGAAGTCTGTTCCACATTTGGTGGAGAGTAGTGAGTCTGAGAGGTCTGCTCTGCATGATTATGGTGAGGATATGGCTGTATTGACTGAGAAACCTCTAGAAGATTGTCCATTAGGGGATTTGGAGGAGGGAGAGGTTGAGACTGCTATGCAAGAG ATGGTTCCAAGTATCATCCCTAAATCTTTTGTCTTTGATTCTGTTCCAATCTGGATTAAACTTGCTCAAATTTTTTTGGAGATGCAGATGGATAAAGGGCTAGTTGTGATAGCTAGTGCAGTAGGCAATCCAGTTGCTTTAGATATTGCCATTAAGGAGAAAAGAAGGTTGTCGTTTGTTAGGGTTTGTATGGAGGCAGGGGATTCTGTGATGCCGCCCTCAGTGACGAAGCCAAGAAAATGCCAGAAGTGTTCATCTTTTGGGCATAGGGGAGATCAATGTAAGAAGTCTGTTCCACATTTGGTGGAGAGTAGTGAGTCTGAGAGGTCTGCTCTGCATGATTATGGTGAGGATATGGCTGTATTGACTGAGAAACCTCTAGAAGATTGTCCATTAGGGGATTTGGAGGAGGGAGAGGTTGAGACTGCTATGCAAGAG ATGGTTCCAAGTATCATCCCTAAATCTTTTGTCTTTGATTCTGTTCCAATCTGGATTAAACTTGCTCAAATTTTTTTGGAGATGCAGATGGATAAAGGGCTAGTTGTGATAGCTAGTGCAGTAGGCAATCCAGTTGCTTTAGATATTGCCATTAAGGAGAAAAGAAGGTTGTCGTTTGTTAGGGTTTGTATGGAGGCAGGGGATTCTGTGATGCCGCCCTCAGTGACGAAGCCAAGAAAATGCCAGAAGTGTTCATCTTTTGGGCATAGGGGAGATCAATGTAAGAAGTCTGTTCCACATTTGGTGGAGAGTAGTGAGTCTGAGAGGTCTGCTCTGCATGATTATGGTGAGGATATGGCTGTATTGACTGAGAAACCTCTAGAAGATTGTCCATTAGGGGATTTGGAGGAGGGAGAGGTTGAGACTGCTATGCAAGAG MVPSIIPKSFVFDSVPIWIKLAQIFLEMQMDKGLVVIASAVGNPVALDIAIKEKRRLSFVRVCMEAGDSVMPPSVTKPRKCQKCSSFGHRGDQCKKSVPHLVESSESERSALHDYGEDMAVLTEKPLEDCPLGDLEEGEVETAMQE
BLAST of ClCG04G003880 vs. TrEMBL
Match: U5GBD7_POPTR (Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0006s16970g PE=4 SV=1) HSP 1 Score: 59.7 bits (143), Expect = 3.4e-06 Identity = 30/80 (37.50%), Postives = 46/80 (57.50%), Query Frame = 1
BLAST of ClCG04G003880 vs. NCBI nr
Match: gi|659126448|ref|XP_008463187.1| (PREDICTED: uncharacterized protein LOC103501395 [Cucumis melo]) HSP 1 Score: 110.5 bits (275), Expect = 2.4e-21 Identity = 64/159 (40.25%), Postives = 89/159 (55.97%), Query Frame = 1
BLAST of ClCG04G003880 vs. NCBI nr
Match: gi|659121150|ref|XP_008460523.1| (PREDICTED: uncharacterized protein LOC103499323 isoform X1 [Cucumis melo]) HSP 1 Score: 106.7 bits (265), Expect = 3.5e-20 Identity = 62/157 (39.49%), Postives = 90/157 (57.32%), Query Frame = 1
BLAST of ClCG04G003880 vs. NCBI nr
Match: gi|778681441|ref|XP_011651511.1| (PREDICTED: uncharacterized protein LOC105434909 [Cucumis sativus]) HSP 1 Score: 98.2 bits (243), Expect = 1.3e-17 Identity = 58/159 (36.48%), Postives = 84/159 (52.83%), Query Frame = 1
BLAST of ClCG04G003880 vs. NCBI nr
Match: gi|659114595|ref|XP_008457134.1| (PREDICTED: uncharacterized protein LOC103496880 [Cucumis melo]) HSP 1 Score: 83.2 bits (204), Expect = 4.2e-13 Identity = 55/143 (38.46%), Postives = 75/143 (52.45%), Query Frame = 1
BLAST of ClCG04G003880 vs. NCBI nr
Match: gi|778697698|ref|XP_004142722.2| (PREDICTED: uncharacterized protein LOC101204295 [Cucumis sativus]) HSP 1 Score: 80.9 bits (198), Expect = 2.1e-12 Identity = 47/126 (37.30%), Postives = 71/126 (56.35%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
The following gene(s) are orthologous to this gene: None The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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