ClCG04G003880 (gene) Watermelon (Charleston Gray)

NameClCG04G003880
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr04 : 15026822 .. 15027307 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTCCAAGTATCATCCCTAAATCTTTTGTCTTTGATTCTGTTCCAATCTGGATTAAACTTGCTCAAATTTTTTTGGAGATGCAGATGGATAAAGGGCTAGTTGTGATAGCTAGTGCAGTAGGCAATCCAGTTGCTTTAGATATTGCCATTAAGGAGAAAAGAAGGTTGTCGTTTGTTAGGGTTTGTATGGAGGCAGGGGATTCTGTGATGCCGCCCTCAGTGACGGTCTAGATTAGGGGCTAGGATTTTGTTGTGTCAGTTACCTATGACTAGAAGCCAAGAAAATGCCAGAAGTGTTCATCTTTTGGGCATAGGGGAGATCAATGTAAGAAGTCTGTTCCACATTTGGTGGAGAGTAGTGAGTCTGAGAGGTCTGCTCTGCATGATTATGGTGAGGATATGGCTGTATTGACTGAGAAACCTCTAGAAGATTGTCCATTAGGGGATTTGGAGGAGGGAGAGGTTGAGACTGCTATGCAAGAG

mRNA sequence

ATGGTTCCAAGTATCATCCCTAAATCTTTTGTCTTTGATTCTGTTCCAATCTGGATTAAACTTGCTCAAATTTTTTTGGAGATGCAGATGGATAAAGGGCTAGTTGTGATAGCTAGTGCAGTAGGCAATCCAGTTGCTTTAGATATTGCCATTAAGGAGAAAAGAAGGTTGTCGTTTGTTAGGGTTTGTATGGAGGCAGGGGATTCTGTGATGCCGCCCTCAGTGACGAAGCCAAGAAAATGCCAGAAGTGTTCATCTTTTGGGCATAGGGGAGATCAATGTAAGAAGTCTGTTCCACATTTGGTGGAGAGTAGTGAGTCTGAGAGGTCTGCTCTGCATGATTATGGTGAGGATATGGCTGTATTGACTGAGAAACCTCTAGAAGATTGTCCATTAGGGGATTTGGAGGAGGGAGAGGTTGAGACTGCTATGCAAGAG

Coding sequence (CDS)

ATGGTTCCAAGTATCATCCCTAAATCTTTTGTCTTTGATTCTGTTCCAATCTGGATTAAACTTGCTCAAATTTTTTTGGAGATGCAGATGGATAAAGGGCTAGTTGTGATAGCTAGTGCAGTAGGCAATCCAGTTGCTTTAGATATTGCCATTAAGGAGAAAAGAAGGTTGTCGTTTGTTAGGGTTTGTATGGAGGCAGGGGATTCTGTGATGCCGCCCTCAGTGACGAAGCCAAGAAAATGCCAGAAGTGTTCATCTTTTGGGCATAGGGGAGATCAATGTAAGAAGTCTGTTCCACATTTGGTGGAGAGTAGTGAGTCTGAGAGGTCTGCTCTGCATGATTATGGTGAGGATATGGCTGTATTGACTGAGAAACCTCTAGAAGATTGTCCATTAGGGGATTTGGAGGAGGGAGAGGTTGAGACTGCTATGCAAGAG

Protein sequence

MVPSIIPKSFVFDSVPIWIKLAQIFLEMQMDKGLVVIASAVGNPVALDIAIKEKRRLSFVRVCMEAGDSVMPPSVTKPRKCQKCSSFGHRGDQCKKSVPHLVESSESERSALHDYGEDMAVLTEKPLEDCPLGDLEEGEVETAMQE
BLAST of ClCG04G003880 vs. TrEMBL
Match: U5GBD7_POPTR (Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0006s16970g PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.4e-06
Identity = 30/80 (37.50%), Postives = 46/80 (57.50%), Query Frame = 1

Query: 15  VPIWIKLAQIFLEMQMDKGLVVIASAVGNPVALDIAIKEKRRLSFVRVCMEAGDSVMPPS 74
           +P+WIKL  + LE   +KGL  +ASA+G P+ +D+    ++RL++ RVC+E   S +   
Sbjct: 59  IPVWIKLYHVPLEYWTNKGLGYVASALGVPLHVDVTTLMRKRLTYARVCVEIDASKLLYE 118

Query: 75  VTKPRKCQKCSSFGHRGDQC 95
                KC  C+ FGH    C
Sbjct: 119 WLH-SKCSSCNVFGHNLTTC 137

BLAST of ClCG04G003880 vs. NCBI nr
Match: gi|659126448|ref|XP_008463187.1| (PREDICTED: uncharacterized protein LOC103501395 [Cucumis melo])

HSP 1 Score: 110.5 bits (275), Expect = 2.4e-21
Identity = 64/159 (40.25%), Postives = 89/159 (55.97%), Query Frame = 1

Query: 3   PSIIPKSFVFDSVPIWIKLAQIFLEMQMDKGLVVIASAVGNPVALDIAIKEKRRLSFVRV 62
           P I+P+ FVF+SVP+WI+L ++ +E+  + GL V+ASAVG P++LD+A KE+RRLS+ RV
Sbjct: 229 PGIVPEFFVFNSVPVWIRLGKLPMELWTEAGLAVVASAVGKPISLDLATKERRRLSYARV 288

Query: 63  CME-AGDSVMPPSVT----------------KPRKCQKCSSFGHRGDQCKKSVPHLVESS 122
           C+E    S MP  +T                KPRKC  C +FGH G  C +S    VES 
Sbjct: 289 CVELEAGSNMPAEITVSLRGVDFNVSVNYEWKPRKCNLCCAFGHSGSNCSRS----VESK 348

Query: 123 ESERSALHDYGE-DMAVLTEKPLEDCPLGDLEEGEVETA 144
             +   +H   + D     E  LE      LEEGE+  +
Sbjct: 349 TIQEEVVHKGDDVDSEPCGEVVLES--FKQLEEGEIRNS 381

BLAST of ClCG04G003880 vs. NCBI nr
Match: gi|659121150|ref|XP_008460523.1| (PREDICTED: uncharacterized protein LOC103499323 isoform X1 [Cucumis melo])

HSP 1 Score: 106.7 bits (265), Expect = 3.5e-20
Identity = 62/157 (39.49%), Postives = 90/157 (57.32%), Query Frame = 1

Query: 3   PSIIPKSFVFDSVPIWIKLAQIFLEMQMDKGLVVIASAVGNPVALDIAIKEKRRLSFVRV 62
           P I+P+SFVF+SVP+WI L ++ +E+  + GL V+A AVG P++LD+A KE+RRLS+ RV
Sbjct: 349 PGIVPESFVFNSVPVWITLGKLPMELWTEAGLAVVAGAVGKPISLDLATKERRRLSYARV 408

Query: 63  CME-AGDSVMPPSVT----------------KPRKCQKCSSFGHRGDQCKKSVPHLVESS 122
           C+E  G S MP  +T                KPRKC  C +FGH   +C +S     E S
Sbjct: 409 CVELEGGSNMPSEITVNLRGVEFNVSVKYEWKPRKCNLCGAFGHSSSKCSRS-----EES 468

Query: 123 ESERSALHDYGEDMAVLTEKPLEDCPL---GDLEEGE 140
           ++ +  +   G+D   +  +P  +  L     LEEGE
Sbjct: 469 KTIQEEVVHKGDD---VYSEPCGEVVLEAFKQLEEGE 497

BLAST of ClCG04G003880 vs. NCBI nr
Match: gi|778681441|ref|XP_011651511.1| (PREDICTED: uncharacterized protein LOC105434909 [Cucumis sativus])

HSP 1 Score: 98.2 bits (243), Expect = 1.3e-17
Identity = 58/159 (36.48%), Postives = 84/159 (52.83%), Query Frame = 1

Query: 3   PSIIPKSFVFDSVPIWIKLAQIFLEMQMDKGLVVIASAVGNPVALDIAIKEKRRLSFVRV 62
           PSI+P+SF+F +V +WIKL +I +E+  D  L V+AS +G P+ LD+A KE+RRLS+ RV
Sbjct: 64  PSIVPESFIFYNVHVWIKLGRIPMELWTDVRLAVVASVIGKPLTLDLATKERRRLSYARV 123

Query: 63  CMEAG-DSVMPPSVT----------------KPRKCQKCSSFGHRGDQCKKSVPHLVESS 122
           C+E   DS M   +                 KP+KC  C SFGH      KSV H  + S
Sbjct: 124 CVELNVDSPMRADIIVNLRGEDFIVTINYEWKPQKCNLCRSFGHSSASYPKSVEHKEDVS 183

Query: 123 ESERSALHDYGEDMAVLTEKPLEDCPLGDLEEGEVETAM 145
             +        ED+  +    +       LEEGE+ +++
Sbjct: 184 NKD--------EDLTSVAYGDVVMESFKQLEEGEINSSL 214

BLAST of ClCG04G003880 vs. NCBI nr
Match: gi|659114595|ref|XP_008457134.1| (PREDICTED: uncharacterized protein LOC103496880 [Cucumis melo])

HSP 1 Score: 83.2 bits (204), Expect = 4.2e-13
Identity = 55/143 (38.46%), Postives = 75/143 (52.45%), Query Frame = 1

Query: 20  KLAQIFLEMQMDKGLVVIASAVGNPVALDIAIKEKRRLSFVRVCMEA-GDSVMPPSVT-- 79
           +L +I +E+  + GL V+ASAVG P+ LD+A KE+RRLS+ RVC++  GDS MP  +T  
Sbjct: 218 RLGRIPMELWTEAGLAVVASAVGKPITLDLATKERRRLSYARVCVKLDGDSHMPAEITVS 277

Query: 80  --------------KPRKCQKCSSFGHRGDQCKKSVPHLVESSE--SERSALHDYGEDMA 139
                         KP KC  C  FGH G +C ++V   V   E  S+ S     G D  
Sbjct: 278 LRGVDFIVSINYEWKPWKCNLCCVFGHSGGKCHRNVESKVIQEEVVSKVSPSKGDGLDSE 337

Query: 140 VLTEKPLEDCPLGDLEEGEVETA 144
              E  LE      LEEGE+ ++
Sbjct: 338 PCGEVVLES--FKQLEEGEIRSS 358

BLAST of ClCG04G003880 vs. NCBI nr
Match: gi|778697698|ref|XP_004142722.2| (PREDICTED: uncharacterized protein LOC101204295 [Cucumis sativus])

HSP 1 Score: 80.9 bits (198), Expect = 2.1e-12
Identity = 47/126 (37.30%), Postives = 71/126 (56.35%), Query Frame = 1

Query: 1   MVPSIIPKSFVFDSVPIWIKLAQIFLEMQMDKGLVVIASAVGNPVALDIAIKEKRRLSFV 60
           M   ++ +SFVF+S+P WIKL +I +E+ ++  L V+ASA+G  ++LD+A KE+R+LSF 
Sbjct: 1   MDSKLVSESFVFNSIPKWIKLGRIPMELWINIRLDVVASAIGKHLSLDLATKERRKLSFA 60

Query: 61  RVCMEAG-DSVMPPSVT----------------KPRKCQKCSSFGHRGDQCKKSVPHLVE 110
           RVC+E   +S M   +T                KPRKC    +F H   +C + V + V 
Sbjct: 61  RVCVELNVESPMLAEITVNLRRVDFIVTVNYEWKPRKCNLYRAFRHCSGKCPRIVENKVH 120

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
U5GBD7_POPTR3.4e-0637.50Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0006s16970g P... [more]
Match NameE-valueIdentityDescription
gi|659126448|ref|XP_008463187.1|2.4e-2140.25PREDICTED: uncharacterized protein LOC103501395 [Cucumis melo][more]
gi|659121150|ref|XP_008460523.1|3.5e-2039.49PREDICTED: uncharacterized protein LOC103499323 isoform X1 [Cucumis melo][more]
gi|778681441|ref|XP_011651511.1|1.3e-1736.48PREDICTED: uncharacterized protein LOC105434909 [Cucumis sativus][more]
gi|659114595|ref|XP_008457134.1|4.2e-1338.46PREDICTED: uncharacterized protein LOC103496880 [Cucumis melo][more]
gi|778697698|ref|XP_004142722.2|2.1e-1237.30PREDICTED: uncharacterized protein LOC101204295 [Cucumis sativus][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR025558DUF4283
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG04G003880.1ClCG04G003880.1mRNA


Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025558Domain of unknown function DUF4283PFAMPF14111DUF4283coord: 5..63
score: 3.

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None