ClCG03G013860 (gene) Watermelon (Charleston Gray)

NameClCG03G013860
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
Descriptionguanyl-nucleotide exchange factors;GTPase binding;GTP binding LENGTH=1830
LocationCG_Chr03 : 28478231 .. 28480280 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGAATCCACCTTTTTCTGGAAAGACAGCTGGTTGGTACATCTCCTCACAAATGGGTCTTCCTAGGCTTTATGCTCTCTCGCCACAAAGATTCAGCCATGGTGAAACATTGAAAAATAAAGTAGAACGTGCGAGGAAGAGCTTGCTTTGGAAGAAGAAAAAAACGATGAAATCAAGGAACGCTTACATGGAAGATGCACTTCAGGATCCCAAACACAAGGTTCATAAACCTGTAAAAGGTCTTCTTAGGCTGGAAATTGAGGAGCACCAGATTTGCCATGCGGACAATGAAAACATGTCAAAGAGTGGTAATGTGATTAGTGACTCTGTTGATATGATGGAGAGTTTGGTTGATTCCACATTTAAGAAGCTCCCTAATAATGGTTCTGACAGCCATCATGATGTAATAGGTTTCGAATAATTCAGTCAATTCGACCTAATCTAGGTAAATCCTTGATTAGTTACATTTTATTACCAAATTAGGTTTTTAACCTTTTTTAATTATCCTTTAGGACACTTGTAATTCTCTATAAATAGAGAGTTCCTCTATTGTATTTGACATCTTTTCATTCATAATAAAAGACTTTGGTTTGGTTTCTTAGAGATTTCCCTCTTTTAAGTACTTAGGCTACTTCAATTTGGTATCAGAGCATCTGTCTAGCCCAAGCTGATTGCCGCCGGTGGAAGTTCAGGAAACTCTTGTCAACATTGATCGCAAGAGGGAGCTTCGTGAGTTGTGCTCGTTGCCGAACAACACACACTTTACTAGGGGAAACCCTTTAAATTCAAGAAAATCAAGAAAATGTTTGAAAACATCCTAAAATGGAATTTTATAGAAGATCTAGTGCATTTTGGGACAGAAATTATTATTTGTGCTATGAACAAAGATCAGAACATGTTCGAGAAAATTCAAGAATCATTTCTACAACAATTATGATGTTGAAGCTTATTCAAGCACACCCAATTTGTACATCAAACCTGAAGTATTGAAAGAAATAAAGAAGGGAGTCAAGAAAATCCAACGTTTGTAGCGAGAGATGACTCAAAACATGGAGCAACTCTCAGAACATTGGCAAAAACTTAAAAGAGAGTTAATTCAAGAAAATCACTATGAAGACTTTTGTCTGAATTGAGAGCTTTATCCTTCATGGTTGATCTTTGACTAGTACTAGGTTGTGGATGCTTATAGTGCTATTGTTGTTTTTCTTTTTCTCTTTTATTTTTGTTTCTTTGTAATTTTGAGCATTAGTCTCTTTTCATTATGTCAATGAAAAGTTATGTTTCCTTTAAAAAAAAAAAAAAAACACAGTATAAATGAATTAAAGGAAAAATAAAATAAAATAAGAACAAGAATAAGAAGAAAGATAAGTTTCAACAAAATTTAAAAAAAGCATGCAGACAACCTTTGATATTGGTGTTGGCTTTTGAAAAAAAGATTTGCCTTTATGCCATGGCCAACTGAGGTCAAAGCATCTAAGCGACCTGATAAGAAAATGAACAGTGTTAAAAACTTCTTCAGTATGAACTGTTCATTACAAATTAAACATACAGCATTTTGCAACTAACCAGAAATACTCGTTAAAATCATCATAGTTTCTCCATGCAGAATGTGGCGCCTGCCCATTATTATTGTTTGCAGCTTCCTGGGCATTTAATAATCTGGACTTATCAATTTCTTCTTTTTTTTCTTTTTTGAGAAGGAAACAGTCTCTTTCATTGATATAATGAATTGAGACAAAGCTCATAGTACACAAAAGAACTCTACACATCAAAACAAGGTAAGGATCAGGAGGTGCACCGGGGCATCTCAACTAAGTTGACACCCCCTTAGCACCCTCATCATATCCTTGATAATCTGGACTTATCAATTGGCAGCTCATGACAGAAGACTAAATATTCCAGGAACATACTTTAATAAATGGAAAATTCAATAGTCTTTTCTGTGATTTTGTGAAATCTAGCTCAAATGCAATCATTCAACGTGAACAGAGGACAGCTCCATGAAATTGGAAACCAGTGCTTTATGTTCTGTAAACTTAGCACCTTGA

mRNA sequence

ATGGTGAATCCACCTTTTTCTGGAAAGACAGCTGGTTGGTACATCTCCTCACAAATGGGTCTTCCTAGGCTTTATGCTCTCTCGCCACAAAGATTCAGCCATGGTGAAACATTGAAAAATAAAGTAGAACGTGCGAGGAAGAGCTTGCTTTGGAAGAAGAAAAAAACGATGAAATCAAGGAACGCTTACATGGAAGATGCACTTCAGGATCCCAAACACAAGGTTCATAAACCTGTAAAAGGTCTTCTTAGGCTGGAAATTGAGGAGCACCAGATTTGCCATGCGGACAATGAAAACATGTCAAAGAGTGGTAATGTGATTAGTGACTCTGTTGATATGATGGAGAGTTTGGTTGATTCCACATTTAAGAAGCTCCCTAATAATGAGGACAGCTCCATGAAATTGGAAACCAGTGCTTTATGTTCTGTAAACTTAGCACCTTGA

Coding sequence (CDS)

ATGGTGAATCCACCTTTTTCTGGAAAGACAGCTGGTTGGTACATCTCCTCACAAATGGGTCTTCCTAGGCTTTATGCTCTCTCGCCACAAAGATTCAGCCATGGTGAAACATTGAAAAATAAAGTAGAACGTGCGAGGAAGAGCTTGCTTTGGAAGAAGAAAAAAACGATGAAATCAAGGAACGCTTACATGGAAGATGCACTTCAGGATCCCAAACACAAGGTTCATAAACCTGTAAAAGGTCTTCTTAGGCTGGAAATTGAGGAGCACCAGATTTGCCATGCGGACAATGAAAACATGTCAAAGAGTGGTAATGTGATTAGTGACTCTGTTGATATGATGGAGAGTTTGGTTGATTCCACATTTAAGAAGCTCCCTAATAATGAGGACAGCTCCATGAAATTGGAAACCAGTGCTTTATGTTCTGTAAACTTAGCACCTTGA

Protein sequence

MVNPPFSGKTAGWYISSQMGLPRLYALSPQRFSHGETLKNKVERARKSLLWKKKKTMKSRNAYMEDALQDPKHKVHKPVKGLLRLEIEEHQICHADNENMSKSGNVISDSVDMMESLVDSTFKKLPNNEDSSMKLETSALCSVNLAP
BLAST of ClCG03G013860 vs. Swiss-Prot
Match: SPK1_ARATH (Guanine nucleotide exchange factor SPIKE 1 OS=Arabidopsis thaliana GN=SPK1 PE=1 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.0e-14
Identity = 36/71 (50.70%), Postives = 53/71 (74.65%), Query Frame = 1

Query: 58  KSRNAYMEDALQDPKHKVHKPVKGLLRLEIEEHQICHADNENMSKSGNVISDSVDMMESL 117
           K + +Y E+++QDPK KVHKPVKG+LRLEIE+H+  H D E++S++G++I+DS+D  + L
Sbjct: 339 KVKESYSEESIQDPKRKVHKPVKGVLRLEIEKHRNGHGDFEDLSENGSIINDSLDPTDRL 398

Query: 118 VDSTFKKLPNN 129
            D T  K P++
Sbjct: 399 SDLTLMKCPSS 409

BLAST of ClCG03G013860 vs. TrEMBL
Match: A0A0A0K3K4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G238980 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 2.0e-25
Identity = 60/82 (73.17%), Postives = 68/82 (82.93%), Query Frame = 1

Query: 58  KSRNAYMEDALQDPKHKVHKPVKGLLRLEIEEHQICHADNENMSKSGNVISDSVDMMESL 117
           K +  Y EDALQDPKHKVHKPVKG+LRLEIE+HQI HADNENMS+SG+VISDSVDM++ L
Sbjct: 339 KVKEGYTEDALQDPKHKVHKPVKGVLRLEIEKHQISHADNENMSESGSVISDSVDMVDRL 398

Query: 118 VDSTFKKLPNNEDSSMKLETSA 140
           VDSTFKK PNN   S  L  S+
Sbjct: 399 VDSTFKKFPNNGSDSHHLSGSS 420

BLAST of ClCG03G013860 vs. TrEMBL
Match: W9RJH8_9ROSA (Dedicator of cytokinesis protein 6 OS=Morus notabilis GN=L484_003010 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 4.4e-17
Identity = 44/71 (61.97%), Postives = 59/71 (83.10%), Query Frame = 1

Query: 58  KSRNAYMEDALQDPKHKVHKPVKGLLRLEIEEHQICHADNENMSKSGNVISDSVDMMESL 117
           K + +Y ED+LQDPK K+HKPVKG+LRLEIE+HQI HAD EN+S+SG+V +DSVD  + +
Sbjct: 342 KVKESYTEDSLQDPKRKIHKPVKGVLRLEIEKHQIDHADLENISESGSVTNDSVDPGDHI 401

Query: 118 VDSTFKKLPNN 129
            DS++ KLP+N
Sbjct: 402 TDSSYGKLPSN 412

BLAST of ClCG03G013860 vs. TrEMBL
Match: D7TC76_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0016g00100 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 3.7e-16
Identity = 45/84 (53.57%), Postives = 62/84 (73.81%), Query Frame = 1

Query: 45  ARKSLLWKKKKTMKSRNAYMEDALQDPKHKVHKPVKGLLRLEIEEHQICHADNENMSKSG 104
           +R S++ +     K + +Y ED+LQDPK KVHKPVKG+LRLEIE+ Q  HAD EN+S+SG
Sbjct: 340 SRSSVIVEISNLNKVKESYTEDSLQDPKRKVHKPVKGVLRLEIEKLQAGHADLENISESG 399

Query: 105 NVISDSVDMMESLVDSTFKKLPNN 129
           +V +DS+D  + + DSTF K P+N
Sbjct: 400 SVTNDSIDPGDRIADSTFTKCPSN 423

BLAST of ClCG03G013860 vs. TrEMBL
Match: M5X3A7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000097mg PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 4.8e-16
Identity = 45/84 (53.57%), Postives = 62/84 (73.81%), Query Frame = 1

Query: 45  ARKSLLWKKKKTMKSRNAYMEDALQDPKHKVHKPVKGLLRLEIEEHQICHADNENMSKSG 104
           +R S++ +     K +  Y ED+LQDPK K+HKPVKG+LRLEIE+HQ  H D EN+S+SG
Sbjct: 327 SRSSVVVEISNLNKVKECYTEDSLQDPKRKIHKPVKGVLRLEIEKHQNDHVDMENISESG 386

Query: 105 NVISDSVDMMESLVDSTFKKLPNN 129
           +V +DS+D  + + DSTF KLP+N
Sbjct: 387 SVTNDSID--DRITDSTFGKLPSN 408

BLAST of ClCG03G013860 vs. TrEMBL
Match: B9HZJ9_POPTR (SPIKE family protein OS=Populus trichocarpa GN=POPTR_0011s00640g PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 4.8e-16
Identity = 40/71 (56.34%), Postives = 57/71 (80.28%), Query Frame = 1

Query: 58  KSRNAYMEDALQDPKHKVHKPVKGLLRLEIEEHQICHADNENMSKSGNVISDSVDMMESL 117
           K + +Y ED+LQDPK KVHKPVKG+LRLEIE+HQ  HA+ EN+S++G++ +DS+D+ + +
Sbjct: 354 KVKESYTEDSLQDPKRKVHKPVKGVLRLEIEKHQTAHAELENLSETGSITNDSIDLGDRV 413

Query: 118 VDSTFKKLPNN 129
            DS F K P+N
Sbjct: 414 ADSAFTKSPSN 424

BLAST of ClCG03G013860 vs. TAIR10
Match: AT4G16340.1 (AT4G16340.1 guanyl-nucleotide exchange factors;GTPase binding;GTP binding)

HSP 1 Score: 81.3 bits (199), Expect = 5.6e-16
Identity = 36/71 (50.70%), Postives = 53/71 (74.65%), Query Frame = 1

Query: 58  KSRNAYMEDALQDPKHKVHKPVKGLLRLEIEEHQICHADNENMSKSGNVISDSVDMMESL 117
           K + +Y E+++QDPK KVHKPVKG+LRLEIE+H+  H D E++S++G++I+DS+D  + L
Sbjct: 339 KVKESYSEESIQDPKRKVHKPVKGVLRLEIEKHRNGHGDFEDLSENGSIINDSLDPTDRL 398

Query: 118 VDSTFKKLPNN 129
            D T  K P++
Sbjct: 399 SDLTLMKCPSS 409

BLAST of ClCG03G013860 vs. NCBI nr
Match: gi|659092519|ref|XP_008447101.1| (PREDICTED: dedicator of cytokinesis protein 7 isoform X2 [Cucumis melo])

HSP 1 Score: 124.8 bits (312), Expect = 1.3e-25
Identity = 60/82 (73.17%), Postives = 68/82 (82.93%), Query Frame = 1

Query: 58  KSRNAYMEDALQDPKHKVHKPVKGLLRLEIEEHQICHADNENMSKSGNVISDSVDMMESL 117
           K +  Y EDALQDPKHKVHKPVKG+LRLEIE+HQI HADNENMS+SG+VISDSVDM++ L
Sbjct: 338 KVKEGYTEDALQDPKHKVHKPVKGVLRLEIEKHQISHADNENMSESGSVISDSVDMVDRL 397

Query: 118 VDSTFKKLPNNEDSSMKLETSA 140
           VDSTFKK PNN   S  L  S+
Sbjct: 398 VDSTFKKFPNNGSDSQHLSCSS 419

BLAST of ClCG03G013860 vs. NCBI nr
Match: gi|659092517|ref|XP_008447100.1| (PREDICTED: dedicator of cytokinesis protein 7 isoform X1 [Cucumis melo])

HSP 1 Score: 124.8 bits (312), Expect = 1.3e-25
Identity = 60/82 (73.17%), Postives = 68/82 (82.93%), Query Frame = 1

Query: 58  KSRNAYMEDALQDPKHKVHKPVKGLLRLEIEEHQICHADNENMSKSGNVISDSVDMMESL 117
           K +  Y EDALQDPKHKVHKPVKG+LRLEIE+HQI HADNENMS+SG+VISDSVDM++ L
Sbjct: 339 KVKEGYTEDALQDPKHKVHKPVKGVLRLEIEKHQISHADNENMSESGSVISDSVDMVDRL 398

Query: 118 VDSTFKKLPNNEDSSMKLETSA 140
           VDSTFKK PNN   S  L  S+
Sbjct: 399 VDSTFKKFPNNGSDSQHLSCSS 420

BLAST of ClCG03G013860 vs. NCBI nr
Match: gi|778726026|ref|XP_011659041.1| (PREDICTED: dedicator of cytokinesis protein 7 isoform X2 [Cucumis sativus])

HSP 1 Score: 123.6 bits (309), Expect = 2.8e-25
Identity = 60/82 (73.17%), Postives = 68/82 (82.93%), Query Frame = 1

Query: 58  KSRNAYMEDALQDPKHKVHKPVKGLLRLEIEEHQICHADNENMSKSGNVISDSVDMMESL 117
           K +  Y EDALQDPKHKVHKPVKG+LRLEIE+HQI HADNENMS+SG+VISDSVDM++ L
Sbjct: 338 KVKEGYTEDALQDPKHKVHKPVKGVLRLEIEKHQISHADNENMSESGSVISDSVDMVDRL 397

Query: 118 VDSTFKKLPNNEDSSMKLETSA 140
           VDSTFKK PNN   S  L  S+
Sbjct: 398 VDSTFKKFPNNGSDSHHLSGSS 419

BLAST of ClCG03G013860 vs. NCBI nr
Match: gi|778726024|ref|XP_011659040.1| (PREDICTED: dedicator of cytokinesis protein 7 isoform X1 [Cucumis sativus])

HSP 1 Score: 123.6 bits (309), Expect = 2.8e-25
Identity = 60/82 (73.17%), Postives = 68/82 (82.93%), Query Frame = 1

Query: 58  KSRNAYMEDALQDPKHKVHKPVKGLLRLEIEEHQICHADNENMSKSGNVISDSVDMMESL 117
           K +  Y EDALQDPKHKVHKPVKG+LRLEIE+HQI HADNENMS+SG+VISDSVDM++ L
Sbjct: 339 KVKEGYTEDALQDPKHKVHKPVKGVLRLEIEKHQISHADNENMSESGSVISDSVDMVDRL 398

Query: 118 VDSTFKKLPNNEDSSMKLETSA 140
           VDSTFKK PNN   S  L  S+
Sbjct: 399 VDSTFKKFPNNGSDSHHLSGSS 420

BLAST of ClCG03G013860 vs. NCBI nr
Match: gi|703092693|ref|XP_010094702.1| (Dedicator of cytokinesis protein 6 [Morus notabilis])

HSP 1 Score: 95.9 bits (237), Expect = 6.3e-17
Identity = 44/71 (61.97%), Postives = 59/71 (83.10%), Query Frame = 1

Query: 58  KSRNAYMEDALQDPKHKVHKPVKGLLRLEIEEHQICHADNENMSKSGNVISDSVDMMESL 117
           K + +Y ED+LQDPK K+HKPVKG+LRLEIE+HQI HAD EN+S+SG+V +DSVD  + +
Sbjct: 342 KVKESYTEDSLQDPKRKIHKPVKGVLRLEIEKHQIDHADLENISESGSVTNDSVDPGDHI 401

Query: 118 VDSTFKKLPNN 129
            DS++ KLP+N
Sbjct: 402 TDSSYGKLPSN 412

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
SPK1_ARATH1.0e-1450.70Guanine nucleotide exchange factor SPIKE 1 OS=Arabidopsis thaliana GN=SPK1 PE=1 ... [more]
Match NameE-valueIdentityDescription
A0A0A0K3K4_CUCSA2.0e-2573.17Uncharacterized protein OS=Cucumis sativus GN=Csa_7G238980 PE=4 SV=1[more]
W9RJH8_9ROSA4.4e-1761.97Dedicator of cytokinesis protein 6 OS=Morus notabilis GN=L484_003010 PE=4 SV=1[more]
D7TC76_VITVI3.7e-1653.57Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0016g00100 PE=4 SV=... [more]
M5X3A7_PRUPE4.8e-1653.57Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000097mg PE=4 SV=1[more]
B9HZJ9_POPTR4.8e-1656.34SPIKE family protein OS=Populus trichocarpa GN=POPTR_0011s00640g PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT4G16340.15.6e-1650.70 guanyl-nucleotide exchange factors;GTPase binding;GTP binding[more]
Match NameE-valueIdentityDescription
gi|659092519|ref|XP_008447101.1|1.3e-2573.17PREDICTED: dedicator of cytokinesis protein 7 isoform X2 [Cucumis melo][more]
gi|659092517|ref|XP_008447100.1|1.3e-2573.17PREDICTED: dedicator of cytokinesis protein 7 isoform X1 [Cucumis melo][more]
gi|778726026|ref|XP_011659041.1|2.8e-2573.17PREDICTED: dedicator of cytokinesis protein 7 isoform X2 [Cucumis sativus][more]
gi|778726024|ref|XP_011659040.1|2.8e-2573.17PREDICTED: dedicator of cytokinesis protein 7 isoform X1 [Cucumis sativus][more]
gi|703092693|ref|XP_010094702.1|6.3e-1761.97Dedicator of cytokinesis protein 6 [Morus notabilis][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006084 acetyl-CoA metabolic process
biological_process GO:0010928 regulation of auxin mediated signaling pathway
biological_process GO:0016192 vesicle-mediated transport
biological_process GO:0010090 trichome morphogenesis
biological_process GO:0016126 sterol biosynthetic process
biological_process GO:0007264 small GTPase mediated signal transduction
biological_process GO:0045010 actin nucleation
biological_process GO:0008360 regulation of cell shape
biological_process GO:0010075 regulation of meristem growth
biological_process GO:0043547 positive regulation of GTPase activity
biological_process GO:0009958 positive gravitropism
biological_process GO:0007020 microtubule nucleation
biological_process GO:0010014 meristem initiation
biological_process GO:0009855 determination of bilateral symmetry
biological_process GO:0000911 cytokinesis by cell plate formation
biological_process GO:0016132 brassinosteroid biosynthetic process
cellular_component GO:0005829 cytosol
cellular_component GO:0070971 endoplasmic reticulum exit site
cellular_component GO:0019898 extrinsic component of membrane
cellular_component GO:0005634 nucleus
cellular_component GO:0005886 plasma membrane
molecular_function GO:0005089 Rho guanyl-nucleotide exchange factor activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG03G013860.1ClCG03G013860.1mRNA


The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG03G013860Cla004772Watermelon (97103) v1wcgwmB224
The following gene(s) are paralogous to this gene:

None