ClCG03G011180 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG03G011180
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	ER glycerol-phosphate acyltransferase
Location	CG_Chr03 : 21163593 .. 21163838 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGTCATTCAAACTGACTAGTGAGCCACCAACTAAATTAGAGTTCATGTCTGGCAAGAACAAGGCTAAAACGGTTGGACAAATTCTAGAGCTAGATATTGAGATCGGTGACCAGCAAACCGATTACCCCTTTATGAAACTCTGCAAGGAGGGGTACGTGATTCCGATGAAGCAGGAGTTTACGCCAGTTACCGTTGATAAATTGCATAAGTCAGATCGTTTTCCAAGATGTCCTATTGGTTAA

mRNA sequence

ATGAGGTCATTCAAACTGACTAGTGAGCCACCAACTAAATTAGAGTTCATGTCTGGCAAGAACAAGGCTAAAACGGTTGGACAAATTCTAGAGCTAGATATTGAGATCGGTGACCAGCAAACCGATTACCCCTTTATGAAACTCTGCAAGGAGGGGTACGTGATTCCGATGAAGCAGGAGTTTACGCCAGTTACCGTTGATAAATTGCATAAGTCAGATCGTTTTCCAAGATGTCCTATTGGTTAA

Coding sequence (CDS)

ATGAGGTCATTCAAACTGACTAGTGAGCCACCAACTAAATTAGAGTTCATGTCTGGCAAGAACAAGGCTAAAACGGTTGGACAAATTCTAGAGCTAGATATTGAGATCGGTGACCAGCAAACCGATTACCCCTTTATGAAACTCTGCAAGGAGGGGTACGTGATTCCGATGAAGCAGGAGTTTACGCCAGTTACCGTTGATAAATTGCATAAGTCAGATCGTTTTCCAAGATGTCCTATTGGTTAA

Protein sequence

MRSFKLTSEPPTKLEFMSGKNKAKTVGQILELDIEIGDQQTDYPFMKLCKEGYVIPMKQEFTPVTVDKLHKSDRFPRCPIG

Homology

[Close]

BLAST of ClCG03G011180 vs. TrEMBL
Match: A0A0A0LHU1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G828950 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 6.1e-13
Identity = 39/53 (73.58%), Postives = 42/53 (79.25%), Query Frame = 1


Query: 19  GKNKAKTVGQILELDIEIGDQQTDYPFMKLCKEGYVIPMKQEFTPVTVDKLHK 72
           GKNKAK V QI + DI IGD+ TDYPFMKLCKEGYV+P K E  PVTVDKL K
Sbjct: 180 GKNKAKAVQQITQPDIGIGDRLTDYPFMKLCKEGYVVPAKHEVKPVTVDKLPK 232

[Close]

BLAST of ClCG03G011180 vs. TrEMBL
Match: M5XGF9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016335mg PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.5e-06
Identity = 30/59 (50.85%), Postives = 38/59 (64.41%), Query Frame = 1


Query: 19  GKNKAKTVGQILELD------IEIGDQQTDYPFMKLCKEGYVIPMKQEFTPVTVDKLHK 72
           GKNKA  + +    D      I +GD++TD+PFMKLCKE YV+P K E  PV+ DKL K
Sbjct: 177 GKNKADALNKAFGTDPSSAPDIGLGDRKTDFPFMKLCKESYVVPAKPEVEPVSHDKLPK 235

[Close]

BLAST of ClCG03G011180 vs. TrEMBL
Match: A0A0D2QNI7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G078200 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 3.3e-06
Identity = 25/39 (64.10%), Postives = 32/39 (82.05%), Query Frame = 1


Query: 33  DIEIGDQQTDYPFMKLCKEGYVIPMKQEFTPVTVDKLHK 72
           DI +GD++TDYPFMKLCKE YV+P K E  PV+++KL K
Sbjct: 194 DIGLGDRKTDYPFMKLCKESYVVPAKPEVDPVSLNKLPK 232

[Close]

BLAST of ClCG03G011180 vs. TrEMBL
Match: A0A022R3D9_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a022981mg PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 5.6e-06
Identity = 28/63 (44.44%), Postives = 42/63 (66.67%), Query Frame = 1


Query: 12  TKLEFMSGKNKAKTVGQI---LELDIEIGDQQTDYPFMKLCKEGYVIPMKQEFTPVTVDK 71
           TK   + G+NKA  + +    ++ +I +GD++TD+PFM LCKE Y++P K E  PV+ DK
Sbjct: 161 TKPGVLVGENKAHALQKTFTTMKPEIGLGDRKTDFPFMNLCKESYMVPRKPEIRPVSTDK 220

[Close]

BLAST of ClCG03G011180 vs. TrEMBL
Match: A0A067LDX1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09692 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 7.3e-06
Identity = 28/57 (49.12%), Postives = 37/57 (64.91%), Query Frame = 1


Query: 19  GKNKAKTVGQILE----LDIEIGDQQTDYPFMKLCKEGYVIPMKQEFTPVTVDKLHK 72
           GKNKA  + +        DI +GD++TDYPFMKLCKEGY++  K +  PV+  KL K
Sbjct: 179 GKNKADALEKAFNDCPMPDIGLGDRKTDYPFMKLCKEGYIVQSKSQVEPVSRQKLSK 235

[Close]

BLAST of ClCG03G011180 vs. NCBI nr
Match: gi|659085488|ref|XP_008443445.1| (PREDICTED: glycerol-3-phosphate 2-O-acyltransferase 6-like [Cucumis melo])

HSP 1 Score: 82.8 bits (203), Expect = 3.0e-13
Identity = 39/53 (73.58%), Postives = 43/53 (81.13%), Query Frame = 1


Query: 19  GKNKAKTVGQILELDIEIGDQQTDYPFMKLCKEGYVIPMKQEFTPVTVDKLHK 72
           GKNKA+ V QI + DI IGD+QTDYPFMKLCKEGYV+P K E  PVTVDKL K
Sbjct: 170 GKNKARAVQQITQPDIGIGDRQTDYPFMKLCKEGYVVPAKHEVKPVTVDKLPK 222

[Close]

BLAST of ClCG03G011180 vs. NCBI nr
Match: gi|449459508|ref|XP_004147488.1| (PREDICTED: glycerol-3-phosphate 2-O-acyltransferase 6-like [Cucumis sativus])

HSP 1 Score: 81.3 bits (199), Expect = 8.8e-13
Identity = 39/53 (73.58%), Postives = 42/53 (79.25%), Query Frame = 1


Query: 19  GKNKAKTVGQILELDIEIGDQQTDYPFMKLCKEGYVIPMKQEFTPVTVDKLHK 72
           GKNKAK V QI + DI IGD+ TDYPFMKLCKEGYV+P K E  PVTVDKL K
Sbjct: 180 GKNKAKAVQQITQPDIGIGDRLTDYPFMKLCKEGYVVPAKHEVKPVTVDKLPK 232

[Close]

BLAST of ClCG03G011180 vs. NCBI nr
Match: gi|802787660|ref|XP_012091984.1| (PREDICTED: glycerol-3-phosphate 2-O-acyltransferase 6-like [Jatropha curcas])

HSP 1 Score: 60.5 bits (145), Expect = 1.6e-06
Identity = 30/56 (53.57%), Postives = 38/56 (67.86%), Query Frame = 1


Query: 19  GKNKAKTVGQI---LELDIEIGDQQTDYPFMKLCKEGYVIPMKQEFTPVTVDKLHK 72
           GKNKA  + ++   +  DI +GD+ TD PFM LCKEGY++P K E  PVT DKL K
Sbjct: 171 GKNKANVLRKLFPDIRPDIGLGDRHTDIPFMALCKEGYLVPPKTEARPVTGDKLPK 226

[Close]

BLAST of ClCG03G011180 vs. NCBI nr
Match: gi|645249326|ref|XP_008230701.1| (PREDICTED: glycerol-3-phosphate 2-O-acyltransferase 6-like [Prunus mume])

HSP 1 Score: 60.1 bits (144), Expect = 2.1e-06
Identity = 30/59 (50.85%), Postives = 38/59 (64.41%), Query Frame = 1


Query: 19  GKNKAKTVGQILELD------IEIGDQQTDYPFMKLCKEGYVIPMKQEFTPVTVDKLHK 72
           GKNKA  + +    D      I +GD++TD+PFMKLCKE YV+P K E  PV+ DKL K
Sbjct: 177 GKNKADALNKAFGTDPSSAPDIGLGDRKTDFPFMKLCKESYVVPAKPEVEPVSHDKLPK 235

[Close]

BLAST of ClCG03G011180 vs. NCBI nr
Match: gi|595961496|ref|XP_007216946.1| (hypothetical protein PRUPE_ppa016335mg [Prunus persica])

HSP 1 Score: 60.1 bits (144), Expect = 2.1e-06
Identity = 30/59 (50.85%), Postives = 38/59 (64.41%), Query Frame = 1


Query: 19  GKNKAKTVGQILELD------IEIGDQQTDYPFMKLCKEGYVIPMKQEFTPVTVDKLHK 72
           GKNKA  + +    D      I +GD++TD+PFMKLCKE YV+P K E  PV+ DKL K
Sbjct: 177 GKNKADALNKAFGTDPSSAPDIGLGDRKTDFPFMKLCKESYVVPAKPEVEPVSHDKLPK 235

The following BLAST results are available for this feature:

BLAST of ClCG03G011180 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LHU1_CUCSA	6.1e-13	73.58	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G828950 PE=4 SV=1	[more]
M5XGF9_PRUPE	1.5e-06	50.85	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016335mg PE=4 SV=1	[more]
A0A0D2QNI7_GOSRA	3.3e-06	64.10	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G078200 PE=4 SV=1	[more]
A0A022R3D9_ERYGU	5.6e-06	44.44	Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a022981mg PE=4 SV=1	[more]
A0A067LDX1_JATCU	7.3e-06	49.12	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09692 PE=4 SV=1	[more]

BLAST of ClCG03G011180 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659085488\|ref\|XP_008443445.1\|	3.0e-13	73.58	PREDICTED: glycerol-3-phosphate 2-O-acyltransferase 6-like [Cucumis melo]	[more]
gi\|449459508\|ref\|XP_004147488.1\|	8.8e-13	73.58	PREDICTED: glycerol-3-phosphate 2-O-acyltransferase 6-like [Cucumis sativus]	[more]
gi\|802787660\|ref\|XP_012091984.1\|	1.6e-06	53.57	PREDICTED: glycerol-3-phosphate 2-O-acyltransferase 6-like [Jatropha curcas]	[more]
gi\|645249326\|ref\|XP_008230701.1\|	2.1e-06	50.85	PREDICTED: glycerol-3-phosphate 2-O-acyltransferase 6-like [Prunus mume]	[more]
gi\|595961496\|ref\|XP_007216946.1\|	2.1e-06	50.85	hypothetical protein PRUPE_ppa016335mg [Prunus persica]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016746	transferase activity, transferring acyl groups

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG03G011180.1	ClCG03G011180.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG03G011180	Cla002536	Watermelon (97103) v1	wcgwmB225

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG03G011180	Silver-seed gourd	carwcgB0890
ClCG03G011180	Cucumber (Chinese Long) v3	cucwcgB041
ClCG03G011180	Watermelon (97103) v2	wcgwmbB186
ClCG03G011180	Cucumber (Gy14) v1	cgywcgB605
ClCG03G011180	Cucurbita maxima (Rimu)	cmawcgB058
ClCG03G011180	Cucurbita maxima (Rimu)	cmawcgB108
ClCG03G011180	Cucurbita moschata (Rifu)	cmowcgB050
ClCG03G011180	Cucurbita moschata (Rifu)	cmowcgB098
ClCG03G011180	Wild cucumber (PI 183967)	cpiwcgB041
ClCG03G011180	Cucumber (Chinese Long) v2	cuwcgB038
ClCG03G011180	Melon (DHL92) v3.5.1	mewcgB239
ClCG03G011180	Watermelon (97103) v1	wcgwmB228
ClCG03G011180	Cucurbita pepo (Zucchini)	cpewcgB322
ClCG03G011180	Bottle gourd (USVL1VR-Ls)	lsiwcgB361
ClCG03G011180	Cucumber (Gy14) v2	cgybwcgB036
ClCG03G011180	Melon (DHL92) v3.6.1	medwcgB230