ClCG01G011620 (gene) Watermelon (Charleston Gray)
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGCTTCAACAAACAAGAAAAGGAAGCTCCAAGATGGCCGAATATCTGACTTTAATGAAACGCTTTGCTGATAATTTATATTTGGTAGGTTCCCCAGTTAGTACAAAAAATCTAATCTTATACGTGATTACAGGACTTGATGAAGAGTACACTCCCATTGTAGTTGTTTTATAGAACTAAGATTTGAATTGGACCACGGTGCAAAATTAGCTGCTTACCTATGAAAATTTCCAAGAATAACTTCAATCTTACAAAGGGCTAGTCTCTATTAATCAACCCTCAACAAATCTAGCTTCAGTGACTCCTAATCAAGAATCAACCTCCAACAATTAGTTCAGATCTTTCAATTCAAGGAACTTTAGAGGCAAAGGCAGGGCCGTAGTGGAGGTTCATCCAAGCTAATTTGTCAAGTATGTGGTAAAACTGGACACTTAGCAGTTGTTTGCTATTACTGCTTTGAGAAGAATTTGAATAACTCTCAAAACTGTGGAAATGACTCATCAAGTCACAATAAAAACAAGTACTCCAACGGTAATCTAACTGCTTTGATAGATACCCCTGAACATTTCCAAGATTCCTCATGGTACCTTGATAGTGGATCCACGAATCTTTTTACATCTGATTTGGAAATCTGGCTATCAAATATGAATATGGAG ATGCTTCAACAAACAAGAAAAGGAAGCTCCAAGATGGCCGAATATCTGACTTTAATGAAACGCTTTGCTGATAATTTATATTTGGTAGGTTCCCCAGTTAGTACAAAAAATCTAATCTTATACGTGATTACAGGACTTGATGAAGAGTACACTCCCATTAGGCAAAGGCAGGGCCGTAGTGGAGGTTCATCCAAGCTAATTTGTCAAGTATGTGGTAAAACTGGACACTTAGCAGTTGTTTGCTATTACTGCTTTGAGAAGAATTTGAATAACTCTCAAAACTGTGGAAATGACTCATCAAGTCACAATAAAAACAAGTACTCCAACGGTAATCTAACTGCTTTGATAGATACCCCTGAACATTTCCAAGATTCCTCATGGTACCTTGATAGTGGATCCACGAATCTTTTTACATCTGATTTGGAAATCTGGCTATCAAATATGAATATGGAG ATGCTTCAACAAACAAGAAAAGGAAGCTCCAAGATGGCCGAATATCTGACTTTAATGAAACGCTTTGCTGATAATTTATATTTGGTAGGTTCCCCAGTTAGTACAAAAAATCTAATCTTATACGTGATTACAGGACTTGATGAAGAGTACACTCCCATTAGGCAAAGGCAGGGCCGTAGTGGAGGTTCATCCAAGCTAATTTGTCAAGTATGTGGTAAAACTGGACACTTAGCAGTTGTTTGCTATTACTGCTTTGAGAAGAATTTGAATAACTCTCAAAACTGTGGAAATGACTCATCAAGTCACAATAAAAACAAGTACTCCAACGGTAATCTAACTGCTTTGATAGATACCCCTGAACATTTCCAAGATTCCTCATGGTACCTTGATAGTGGATCCACGAATCTTTTTACATCTGATTTGGAAATCTGGCTATCAAATATGAATATGGAG MLQQTRKGSSKMAEYLTLMKRFADNLYLVGSPVSTKNLILYVITGLDEEYTPIRQRQGRSGGSSKLICQVCGKTGHLAVVCYYCFEKNLNNSQNCGNDSSSHNKNKYSNGNLTALIDTPEHFQDSSWYLDSGSTNLFTSDLEIWLSNMNME
BLAST of ClCG01G011620 vs. TrEMBL
Match: A0A151QZ78_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_043331 PE=4 SV=1) HSP 1 Score: 72.8 bits (177), Expect = 4.1e-10 Identity = 42/135 (31.11%), Postives = 73/135 (54.07%), Query Frame = 1
BLAST of ClCG01G011620 vs. TrEMBL
Match: Q2QSB3_ORYSJ (Retrotransposon protein, putative, Ty1-copia subclass OS=Oryza sativa subsp. japonica GN=LOC_Os12g24710 PE=4 SV=2) HSP 1 Score: 68.2 bits (165), Expect = 1.0e-08 Identity = 36/138 (26.09%), Postives = 64/138 (46.38%), Query Frame = 1
BLAST of ClCG01G011620 vs. TrEMBL
Match: A0A151S6M8_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_027809 PE=4 SV=1) HSP 1 Score: 63.5 bits (153), Expect = 2.5e-07 Identity = 42/141 (29.79%), Postives = 63/141 (44.68%), Query Frame = 1
BLAST of ClCG01G011620 vs. TrEMBL
Match: A0A151S6M8_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_027809 PE=4 SV=1) HSP 1 Score: 59.7 bits (143), Expect = 3.6e-06 Identity = 29/50 (58.00%), Postives = 34/50 (68.00%), Query Frame = 1
HSP 2 Score: 63.5 bits (153), Expect = 2.5e-07 Identity = 28/53 (52.83%), Postives = 40/53 (75.47%), Query Frame = 1
BLAST of ClCG01G011620 vs. TrEMBL
Match: A5C2Y5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_038015 PE=4 SV=1) HSP 1 Score: 59.7 bits (143), Expect = 3.6e-06 Identity = 36/109 (33.03%), Postives = 56/109 (51.38%), Query Frame = 1
BLAST of ClCG01G011620 vs. NCBI nr
Match: gi|1012323494|gb|KYP35620.1| (hypothetical protein KK1_043331 [Cajanus cajan]) HSP 1 Score: 72.8 bits (177), Expect = 5.8e-10 Identity = 42/135 (31.11%), Postives = 73/135 (54.07%), Query Frame = 1
BLAST of ClCG01G011620 vs. NCBI nr
Match: gi|108862594|gb|ABA97707.2| (retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group]) HSP 1 Score: 68.2 bits (165), Expect = 1.4e-08 Identity = 36/138 (26.09%), Postives = 64/138 (46.38%), Query Frame = 1
BLAST of ClCG01G011620 vs. NCBI nr
Match: gi|698478226|ref|XP_009786285.1| (PREDICTED: uncharacterized protein LOC104234421, partial [Nicotiana sylvestris]) HSP 1 Score: 67.8 bits (164), Expect = 1.9e-08 Identity = 46/141 (32.62%), Postives = 70/141 (49.65%), Query Frame = 1
BLAST of ClCG01G011620 vs. NCBI nr
Match: gi|955303099|ref|XP_014630772.1| (PREDICTED: uncharacterized protein LOC106798691 [Glycine max]) HSP 1 Score: 65.9 bits (159), Expect = 7.1e-08 Identity = 35/87 (40.23%), Postives = 44/87 (50.57%), Query Frame = 1
BLAST of ClCG01G011620 vs. NCBI nr
Match: gi|955303099|ref|XP_014630772.1| (PREDICTED: uncharacterized protein LOC106798691 [Glycine max]) HSP 1 Score: 55.1 bits (131), Expect = 1.3e-04 Identity = 35/108 (32.41%), Postives = 53/108 (49.07%), Query Frame = 1
HSP 2 Score: 63.5 bits (153), Expect = 3.5e-07 Identity = 42/141 (29.79%), Postives = 63/141 (44.68%), Query Frame = 1
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
The following gene(s) are orthologous to this gene: None The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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