Csa7G452230 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa7G452230
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr7 : 18970127 .. 18970619 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CACCAATAATCCAAAGAAGTTTGAGTACATACACGTACGTACCCAATAGTACATACCCCTTCACTTCACTGTTATATCTCTTCAAAATATTCTACCAATGGCCATACCTAAACTCCCTCTAACCTCTGTTTTTATCACCGTTCTCGTCTTCGCCATGGTTCTCTCTCCCATGACAACTCCAACCGCCAGTGCCACTCGTGTTCTTCTACAGCAAAGTAAGGATTTTTTTTCCTTTTTTTTGTAAATTAAATATAGACAGTTTGTACATTTGAATTTGATTAATAAACAACAGTAGCTATTTTCTTTAATGGAAAAAACTTGGTTGTTAATATTTAAAGCTAATTATGAGTTGGGGTGGTGTGTGTATGTGTGTGCAGTTAATAGGCCGCCTATATGTCCGGCGTGCGTGTGCTGCGAACCGCCACCGGCGGGATCCTGTTGCCGCTGTTGTGCTTCTCCGATTCAGACTTCATCTCAGAACGGGTCGCCATGA

mRNA sequence

ATGGCCATACCTAAACTCCCTCTAACCTCTGTTTTTATCACCGTTCTCGTCTTCGCCATGGTTCTCTCTCCCATGACAACTCCAACCGCCAGTGCCACTCGTGTTCTTCTACAGCAAATTAATAGGCCGCCTATATGTCCGGCGTGCGTGTGCTGCGAACCGCCACCGGCGGGATCCTGTTGCCGCTGTTGTGCTTCTCCGATTCAGACTTCATCTCAGAACGGGTCGCCATGA

Coding sequence (CDS)

ATGGCCATACCTAAACTCCCTCTAACCTCTGTTTTTATCACCGTTCTCGTCTTCGCCATGGTTCTCTCTCCCATGACAACTCCAACCGCCAGTGCCACTCGTGTTCTTCTACAGCAAATTAATAGGCCGCCTATATGTCCGGCGTGCGTGTGCTGCGAACCGCCACCGGCGGGATCCTGTTGCCGCTGTTGTGCTTCTCCGATTCAGACTTCATCTCAGAACGGGTCGCCATGA

Protein sequence

MAIPKLPLTSVFITVLVFAMVLSPMTTPTASATRVLLQQINRPPICPACVCCEPPPAGSCCRCCASPIQTSSQNGSP*

Homology

[Close]

BLAST of Csa7G452230 vs. TrEMBL
Match: A0A0A0K7Y9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G452230 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 5.3e-38
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 1


Query: 1  MAIPKLPLTSVFITVLVFAMVLSPMTTPTASATRVLLQQINRPPICPACVCCEPPPAGSC 60
          MAIPKLPLTSVFITVLVFAMVLSPMTTPTASATRVLLQQINRPPICPACVCCEPPPAGSC
Sbjct: 1  MAIPKLPLTSVFITVLVFAMVLSPMTTPTASATRVLLQQINRPPICPACVCCEPPPAGSC 60

Query: 61 CRCCASPIQTSSQNGSP 78
          CRCCASPIQTSSQNGSP
Sbjct: 61 CRCCASPIQTSSQNGSP 77

[Close]

BLAST of Csa7G452230 vs. TrEMBL
Match: B9RQB0_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1487280 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.0e-17
Identity = 48/72 (66.67%), Postives = 52/72 (72.22%), Query Frame = 1


Query: 8  LTSVFITVLVFAMVLSPMTTPTASAT--RVLLQQINRPPICPACVCCEPPPAGSCCRCCA 67
          L S F+T LVFAM+LSP+    A+    R LLQ   RPPICPACVCC PPP GSCCRCCA
Sbjct: 6  LKSSFVTFLVFAMILSPIIPSEAARLNHRDLLQ--TRPPICPACVCCAPPPPGSCCRCCA 65

Query: 68 SPIQTSSQNGSP 78
          SPI T S NGSP
Sbjct: 66 SPIVTESTNGSP 75

[Close]

BLAST of Csa7G452230 vs. TrEMBL
Match: B9GWD6_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s05970g PE=4 SV=2)

HSP 1 Score: 85.5 bits (210), Expect = 3.1e-14
Identity = 37/70 (52.86%), Postives = 49/70 (70.00%), Query Frame = 1


Query: 8  LTSVFITVLVFAMVLSPMTTPTASATRVLLQQINRPPICPACVCCEPPPAGSCCRCCASP 67
          L S+ +T+ +FAMVLSP+  P+A A R+  + +   PICP CVCC PPP GSCC C ++P
Sbjct: 6  LKSIMVTLFIFAMVLSPIL-PSAEAGRLNYRGLQSGPICPTCVCCSPPPPGSCCPCSSTP 65

Query: 68 IQTSSQNGSP 78
          I+T S  GSP
Sbjct: 66 IETESTTGSP 74

[Close]

BLAST of Csa7G452230 vs. TrEMBL
Match: U5GPS2_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s05980g PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 3.1e-14
Identity = 39/71 (54.93%), Postives = 51/71 (71.83%), Query Frame = 1


Query: 8  LTSVFITVLVFAMVLSPMTTPTASATRVLLQQINRP-PICPACVCCEPPPAGSCCRCCAS 67
          L S+ +T+ +FAMVLSP+  P+A A R+  + +    PICPACVCC PPP GSCC CC++
Sbjct: 6  LKSILVTLFIFAMVLSPIL-PSAEAGRLNHRGLQSGRPICPACVCCSPPPPGSCCPCCST 65

Query: 68 PIQTSSQNGSP 78
          PI+T S  GSP
Sbjct: 66 PIETESTTGSP 75

[Close]

BLAST of Csa7G452230 vs. TrEMBL
Match: A0A022Q2P9_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a017424mg PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 7.0e-14
Identity = 40/72 (55.56%), Postives = 49/72 (68.06%), Query Frame = 1


Query: 8  LTSVFITVLVFAMVLSPMTTPTASATRVLLQQ--INRPPICPACVCCEPPPAGSCCRCCA 67
          + SV +T+LVF  VLSPM + T  A RV + Q  +   PICPACVCC PPPAGSCCRCCA
Sbjct: 6  VNSVMVTILVFVFVLSPMLS-TGDAARVTIVQEVLATRPICPACVCCTPPPAGSCCRCCA 65

Query: 68 SPIQTSSQNGSP 78
           P   + +N +P
Sbjct: 66 FPSPIAVENHAP 76

[Close]

BLAST of Csa7G452230 vs. TAIR10
Match: AT1G51920.1 (AT1G51920.1 unknown protein)

HSP 1 Score: 71.6 bits (174), Expect = 2.4e-13
Identity = 35/69 (50.72%), Postives = 47/69 (68.12%), Query Frame = 1


Query: 10 SVFITVLV-FAMVLSPMTTPTASATRVLLQQIN-RPPICPACVCCEPPPAGSCCRCCASP 69
          S+F+ + V F +++ P++   ++ATR+    I+ R PICPACVCCEP P GSCCRCCASP
Sbjct: 9  SIFLKLFVLFLLLVLPLSQ--SNATRIPRAPISSRRPICPACVCCEPAPLGSCCRCCASP 68

Query: 70 IQTSSQNGS 77
          I T + + S
Sbjct: 69 IVTQTHHHS 75

[Close]

BLAST of Csa7G452230 vs. TAIR10
Match: AT1G51915.1 (AT1G51915.1 cryptdin protein-related)

HSP 1 Score: 52.4 bits (124), Expect = 1.5e-07
Identity = 22/55 (40.00%), Postives = 32/55 (58.18%), Query Frame = 1


Query: 9  TSVFITVLVFAMVLSPMTTPTASATRVLLQQINRPPICPACVCCEPPPAGSCCRC 64
          +++ I+VLV A+VLSP+    A+   +  +      +CP+CVCC P P G+CC C
Sbjct: 7  STMLISVLVLALVLSPILPCQATRAHLDAETRMLRRVCPSCVCCAPAPRGACCPC 61

[Close]

BLAST of Csa7G452230 vs. NCBI nr
Match: gi|700190335|gb|KGN45568.1| (hypothetical protein Csa_7G452230 [Cucumis sativus])

HSP 1 Score: 164.5 bits (415), Expect = 7.6e-38
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 1


Query: 1  MAIPKLPLTSVFITVLVFAMVLSPMTTPTASATRVLLQQINRPPICPACVCCEPPPAGSC 60
          MAIPKLPLTSVFITVLVFAMVLSPMTTPTASATRVLLQQINRPPICPACVCCEPPPAGSC
Sbjct: 1  MAIPKLPLTSVFITVLVFAMVLSPMTTPTASATRVLLQQINRPPICPACVCCEPPPAGSC 60

Query: 61 CRCCASPIQTSSQNGSP 78
          CRCCASPIQTSSQNGSP
Sbjct: 61 CRCCASPIQTSSQNGSP 77

[Close]

BLAST of Csa7G452230 vs. NCBI nr
Match: gi|255549756|ref|XP_002515929.1| (PREDICTED: uncharacterized protein LOC8281613 [Ricinus communis])

HSP 1 Score: 97.1 bits (240), Expect = 1.5e-17
Identity = 48/72 (66.67%), Postives = 52/72 (72.22%), Query Frame = 1


Query: 8  LTSVFITVLVFAMVLSPMTTPTASAT--RVLLQQINRPPICPACVCCEPPPAGSCCRCCA 67
          L S F+T LVFAM+LSP+    A+    R LLQ   RPPICPACVCC PPP GSCCRCCA
Sbjct: 6  LKSSFVTFLVFAMILSPIIPSEAARLNHRDLLQ--TRPPICPACVCCAPPPPGSCCRCCA 65

Query: 68 SPIQTSSQNGSP 78
          SPI T S NGSP
Sbjct: 66 SPIVTESTNGSP 75

[Close]

BLAST of Csa7G452230 vs. NCBI nr
Match: gi|566161093|ref|XP_002304154.2| (hypothetical protein POPTR_0003s05970g [Populus trichocarpa])

HSP 1 Score: 85.5 bits (210), Expect = 4.5e-14
Identity = 37/70 (52.86%), Postives = 49/70 (70.00%), Query Frame = 1


Query: 8  LTSVFITVLVFAMVLSPMTTPTASATRVLLQQINRPPICPACVCCEPPPAGSCCRCCASP 67
          L S+ +T+ +FAMVLSP+  P+A A R+  + +   PICP CVCC PPP GSCC C ++P
Sbjct: 6  LKSIMVTLFIFAMVLSPIL-PSAEAGRLNYRGLQSGPICPTCVCCSPPPPGSCCPCSSTP 65

Query: 68 IQTSSQNGSP 78
          I+T S  GSP
Sbjct: 66 IETESTTGSP 74

[Close]

BLAST of Csa7G452230 vs. NCBI nr
Match: gi|566161095|ref|XP_006385495.1| (hypothetical protein POPTR_0003s05980g [Populus trichocarpa])

HSP 1 Score: 85.5 bits (210), Expect = 4.5e-14
Identity = 39/71 (54.93%), Postives = 51/71 (71.83%), Query Frame = 1


Query: 8  LTSVFITVLVFAMVLSPMTTPTASATRVLLQQINRP-PICPACVCCEPPPAGSCCRCCAS 67
          L S+ +T+ +FAMVLSP+  P+A A R+  + +    PICPACVCC PPP GSCC CC++
Sbjct: 6  LKSILVTLFIFAMVLSPIL-PSAEAGRLNHRGLQSGRPICPACVCCSPPPPGSCCPCCST 65

Query: 68 PIQTSSQNGSP 78
          PI+T S  GSP
Sbjct: 66 PIETESTTGSP 75

[Close]

BLAST of Csa7G452230 vs. NCBI nr
Match: gi|604301852|gb|EYU21438.1| (hypothetical protein MIMGU_mgv1a017424mg [Erythranthe guttata])

HSP 1 Score: 84.3 bits (207), Expect = 1.0e-13
Identity = 40/72 (55.56%), Postives = 49/72 (68.06%), Query Frame = 1


Query: 8  LTSVFITVLVFAMVLSPMTTPTASATRVLLQQ--INRPPICPACVCCEPPPAGSCCRCCA 67
          + SV +T+LVF  VLSPM + T  A RV + Q  +   PICPACVCC PPPAGSCCRCCA
Sbjct: 6  VNSVMVTILVFVFVLSPMLS-TGDAARVTIVQEVLATRPICPACVCCTPPPAGSCCRCCA 65

Query: 68 SPIQTSSQNGSP 78
           P   + +N +P
Sbjct: 66 FPSPIAVENHAP 76

The following BLAST results are available for this feature:

BLAST of Csa7G452230 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K7Y9_CUCSA	5.3e-38	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G452230 PE=4 SV=1	[more]
B9RQB0_RICCO	1.0e-17	66.67	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1487280 PE=4 SV=1	[more]
B9GWD6_POPTR	3.1e-14	52.86	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s05970g PE=4 SV=2	[more]
U5GPS2_POPTR	3.1e-14	54.93	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s05980g PE=4 SV=1	[more]
A0A022Q2P9_ERYGU	7.0e-14	55.56	Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a017424mg PE=4 SV=1	[more]

BLAST of Csa7G452230 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G51920.1	2.4e-13	50.72	unknown protein	[more]
AT1G51915.1	1.5e-07	40.00	cryptdin protein-related	[more]

BLAST of Csa7G452230 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700190335\|gb\|KGN45568.1\|	7.6e-38	100.00	hypothetical protein Csa_7G452230 [Cucumis sativus]	[more]
gi\|255549756\|ref\|XP_002515929.1\|	1.5e-17	66.67	PREDICTED: uncharacterized protein LOC8281613 [Ricinus communis]	[more]
gi\|566161093\|ref\|XP_002304154.2\|	4.5e-14	52.86	hypothetical protein POPTR_0003s05970g [Populus trichocarpa]	[more]
gi\|566161095\|ref\|XP_006385495.1\|	4.5e-14	54.93	hypothetical protein POPTR_0003s05980g [Populus trichocarpa]	[more]
gi\|604301852\|gb\|EYU21438.1\|	1.0e-13	55.56	hypothetical protein MIMGU_mgv1a017424mg [Erythranthe guttata]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa7G452230.1	Csa7G452230.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36328	FAMILY NOT NAMED	coord: 3..77 score: 3.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa7G452230	Cla015616	Watermelon (97103) v1	cuwmB566
Csa7G452230	ClCG09G000350	Watermelon (Charleston Gray)	cuwcgB524
Csa7G452230	Lsi02G029710	Bottle gourd (USVL1VR-Ls)	culsiB503
Csa7G452230	Cla97C09G162230	Watermelon (97103) v2	cuwmbB570
Csa7G452230	Bhi09G000340	Wax gourd	cuwgoB690
Csa7G452230	Cucsa.360880	Cucumber (Gy14) v1	cgycuB508
Csa7G452230	CmaCh17G007540	Cucurbita maxima (Rimu)	cmacuB383
Csa7G452230	CmoCh17G007230	Cucurbita moschata (Rifu)	cmocuB373
Csa7G452230	Cp4.1LG12g08700	Cucurbita pepo (Zucchini)	cpecuB156
Csa7G452230	CsGy7G021420	Cucumber (Gy14) v2	cgybcuB323

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa7G452230	Cucurbita pepo (Zucchini)	cpecuB336
Csa7G452230	Cucurbita pepo (Zucchini)	cpecuB594
Csa7G452230	Bottle gourd (USVL1VR-Ls)	culsiB533
Csa7G452230	Melon (DHL92) v3.6.1	cumedB501
Csa7G452230	Melon (DHL92) v3.6.1	cumedB531
Csa7G452230	Silver-seed gourd	carcuB0761
Csa7G452230	Watermelon (97103) v2	cuwmbB552
Csa7G452230	Wax gourd	cuwgoB656
Csa7G452230	Cucurbita maxima (Rimu)	cmacuB273
Csa7G452230	Cucurbita maxima (Rimu)	cmacuB490
Csa7G452230	Cucurbita maxima (Rimu)	cmacuB919
Csa7G452230	Cucurbita moschata (Rifu)	cmocuB261
Csa7G452230	Cucurbita moschata (Rifu)	cmocuB480
Csa7G452230	Cucurbita moschata (Rifu)	cmocuB905
Csa7G452230	Melon (DHL92) v3.5.1	cumeB521
Csa7G452230	Melon (DHL92) v3.5.1	cumeB554
Csa7G452230	Watermelon (Charleston Gray)	cuwcgB567
Csa7G452230	Watermelon (97103) v1	cuwmB551
Csa7G452230	Watermelon (97103) v1	cuwmB583