Csa7G374730.1 (mRNA) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa7G374730.1
Type	mRNA
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	U-box domain-containing protein 3
Location	Chr7 : 13636410 .. 13637309 (-)
Sequence length	462

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTGTTTTATCGTGAATGTGAGTCACTGGATGCAGCTGTAAATGAGGCTCGAGAATTCATCGAAAACTGGTGTCTGAAACAAGCATAATTTGCAGTGTGAGTTACCTTGAGAATCAGCCTTCTAATACTCAAGTTCTTTTTTTCATCATCCACTGCATATGCTTCCGTGGTTGTATCAGCGACTCTTTTTCTTTTGCATGTTCTCATGGAATTAGCTGGCCGTTCTTTGTCTGTGGCTGTTAGATTTCAAGAGCTGAATGCTGTGACAAATTCAAAGCTCTTCACAAGTGACCTGCGAGATTGTTTGGAAGTTGTTGGAGTCAGTATCATGCAGCTCGAGTTTAAATGTTGTTCAGGCATGTATAAATTTGAAAACTTTTATAACACATTTTATTTTTGATGTTTTTTCCTGTTTCTAAATAAATTGAGATGTTTGGAGTAGTAAACACTTAGCTAGCTCACACTTTTTTTTCTCTCTTATTTTGAAATATAAGTTTCTTGATTTTGATCCATCTTTTGTCATAATTTTCTGACTATTTGATAAGAATGATATTGACATTTAATGAACTGTCCAGAAATGTCCTGAAGGTCTTCAATCATTGAAACAAGAAAGGACAGCTAGATCTACAGAAGCGGCTCTAATTAGTCAAAGAAGCATTGGCCCAAACTCTGAACATCTTCAAGCACTTCATTTGACGTCAAATCAAGAACTTCTGAAAAAGACTATAGCTGTTGAAAAGGAGAGAATCGATGCTGAATCCAACAATGCGACGGAGGAACTACATCACATCATCCAGATTGTGGATCTAATTATCCGTATACCATTCCGTGGGATAAATGGTGTCTCGGTTCCTTCCTATTTCCATTGCCCAATTGTCATTGGAGCTGATTCTTGA

mRNA sequence

ATGAGTTGTTTTATCGTGAATGTGAGTCACTGGATGCAGCTATTTCAAGAGCTGAATGCTGTGACAAATTCAAAGCTCTTCACAAGTGACCTGCGAGATTGTTTGGAAGTTGTTGGAGTCAGTATCATGCAGCTCGAGTTTAAATGTTGTTCAGGTCTTCAATCATTGAAACAAGAAAGGACAGCTAGATCTACAGAAGCGGCTCTAATTAGTCAAAGAAGCATTGGCCCAAACTCTGAACATCTTCAAGCACTTCATTTGACGTCAAATCAAGAACTTCTGAAAAAGACTATAGCTGTTGAAAAGGAGAGAATCGATGCTGAATCCAACAATGCGACGGAGGAACTACATCACATCATCCAGATTGTGGATCTAATTATCCGTATACCATTCCGTGGGATAAATGGTGTCTCGGTTCCTTCCTATTTCCATTGCCCAATTGTCATTGGAGCTGATTCTTGA

Coding sequence (CDS)

ATGAGTTGTTTTATCGTGAATGTGAGTCACTGGATGCAGCTATTTCAAGAGCTGAATGCTGTGACAAATTCAAAGCTCTTCACAAGTGACCTGCGAGATTGTTTGGAAGTTGTTGGAGTCAGTATCATGCAGCTCGAGTTTAAATGTTGTTCAGGTCTTCAATCATTGAAACAAGAAAGGACAGCTAGATCTACAGAAGCGGCTCTAATTAGTCAAAGAAGCATTGGCCCAAACTCTGAACATCTTCAAGCACTTCATTTGACGTCAAATCAAGAACTTCTGAAAAAGACTATAGCTGTTGAAAAGGAGAGAATCGATGCTGAATCCAACAATGCGACGGAGGAACTACATCACATCATCCAGATTGTGGATCTAATTATCCGTATACCATTCCGTGGGATAAATGGTGTCTCGGTTCCTTCCTATTTCCATTGCCCAATTGTCATTGGAGCTGATTCTTGA

Protein sequence

MSCFIVNVSHWMQLFQELNAVTNSKLFTSDLRDCLEVVGVSIMQLEFKCCSGLQSLKQERTARSTEAALISQRSIGPNSEHLQALHLTSNQELLKKTIAVEKERIDAESNNATEELHHIIQIVDLIIRIPFRGINGVSVPSYFHCPIVIGADS*

Homology

[Close]

BLAST of Csa7G374730.1 vs. Swiss-Prot
Match: PUB3_ARATH (U-box domain-containing protein 3 OS=Arabidopsis thaliana GN=PUB3 PE=2 SV=2)

HSP 1 Score: 60.8 bits (146), Expect = 1.5e-08
Identity = 41/122 (33.61%), Postives = 65/122 (53.28%), Query Frame = 1


Query: 41  SIMQLEFKCCSGLQSLKQERTARST-EAALISQRS--IGPNSEHL----QALHLTSNQEL 100
           S+  +E +C    +S KQE T     E AL +Q+      ++ HL    Q L L SNQ+L
Sbjct: 126 SVQSVE-RCVQETESFKQEGTLMELMENALRNQKDDITSLDNNHLESIIQMLGLISNQDL 185

Query: 101 LKKTIAVEKERIDAESNNATEELHHIIQIVDLIIRIP--------FRGINGVSVPSYFHC 148
           LK++I VEKERI ++++ + E++    Q+++L++ I              G+S+P YF C
Sbjct: 186 LKESITVEKERIRSQASKSEEDMEQTEQLIELVLCIREHMLKTEFLEVAKGISIPPYFRC 245

[Close]

BLAST of Csa7G374730.1 vs. TrEMBL
Match: A0A0A0K4T7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G374730 PE=4 SV=1)

HSP 1 Score: 303.9 bits (777), Expect = 1.1e-79
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 1


Query: 1   MSCFIVNVSHWMQLFQELNAVTNSKLFTSDLRDCLEVVGVSIMQLEFKCCSGLQSLKQER 60
           MSCFIVNVSHWMQLFQELNAVTNSKLFTSDLRDCLEVVGVSIMQLEFKCCSGLQSLKQER
Sbjct: 1   MSCFIVNVSHWMQLFQELNAVTNSKLFTSDLRDCLEVVGVSIMQLEFKCCSGLQSLKQER 60

Query: 61  TARSTEAALISQRSIGPNSEHLQALHLTSNQELLKKTIAVEKERIDAESNNATEELHHII 120
           TARSTEAALISQRSIGPNSEHLQALHLTSNQELLKKTIAVEKERIDAESNNATEELHHII
Sbjct: 61  TARSTEAALISQRSIGPNSEHLQALHLTSNQELLKKTIAVEKERIDAESNNATEELHHII 120

Query: 121 QIVDLIIRIPFRGINGVSVPSYFHCPIVIGADS 154
           QIVDLIIRIPFRGINGVSVPSYFHCPIVIGADS
Sbjct: 121 QIVDLIIRIPFRGINGVSVPSYFHCPIVIGADS 153

[Close]

BLAST of Csa7G374730.1 vs. TrEMBL
Match: A0A0A0K726_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G374670 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 5.6e-31
Identity = 81/113 (71.68%), Postives = 87/113 (76.99%), Query Frame = 1


Query: 48  KCCSGLQSLKQERTARSTEAALISQRS-IGPNSEHL----QALHLTSNQELLKKTIAVEK 107
           KC  GLQSLKQER + S E ALISQRS IGPNSEHL    +ALHLTSNQELLK+TIAVEK
Sbjct: 132 KCLEGLQSLKQERISDSIEEALISQRSGIGPNSEHLLKLIEALHLTSNQELLKETIAVEK 191

Query: 108 ERIDAESNNATEELHHIIQIVDLIIRIP--------FRGINGVSVPSYFHCPI 148
           ERI+A  NNA EELHHI QI+DLIIRI         F GINGVSVPSYF CP+
Sbjct: 192 ERINAARNNAKEELHHINQIMDLIIRIRDWMVRKDYFHGINGVSVPSYFRCPL 244

[Close]

BLAST of Csa7G374730.1 vs. TrEMBL
Match: A0A061DQQ1_THECC (ARM repeat superfamily protein isoform 2 OS=Theobroma cacao GN=TCM_004020 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 4.0e-13
Identity = 51/112 (45.54%), Postives = 70/112 (62.50%), Query Frame = 1


Query: 49  CCSGLQSLKQERTARSTEAALISQRSIG-PNSEHL----QALHLTSNQELLKKTIAVEKE 108
           C   ++ LKQER + + E AL SQR+   P  +HL    ++L+LTSNQELLK+T+AVEKE
Sbjct: 97  CMREIKCLKQERVSENIEEALRSQRNDAIPCPDHLVEVIKSLNLTSNQELLKETVAVEKE 156

Query: 109 RIDAESNNATEELHHIIQIVDLIIRI--------PFRGINGVSVPSYFHCPI 148
           R++A+ NNA  +L  I QIVDLI  +         F    GV +P +F CP+
Sbjct: 157 RMNAQVNNAKGKLDQINQIVDLISHVRDYLLKIEHFEPTTGVLIPPHFLCPL 208

[Close]

BLAST of Csa7G374730.1 vs. TrEMBL
Match: A0A061DNZ3_THECC (ARM repeat superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_004020 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 4.0e-13
Identity = 51/112 (45.54%), Postives = 70/112 (62.50%), Query Frame = 1


Query: 49  CCSGLQSLKQERTARSTEAALISQRSIG-PNSEHL----QALHLTSNQELLKKTIAVEKE 108
           C   ++ LKQER + + E AL SQR+   P  +HL    ++L+LTSNQELLK+T+AVEKE
Sbjct: 133 CMREIKCLKQERVSENIEEALRSQRNDAIPCPDHLVEVIKSLNLTSNQELLKETVAVEKE 192

Query: 109 RIDAESNNATEELHHIIQIVDLIIRI--------PFRGINGVSVPSYFHCPI 148
           R++A+ NNA  +L  I QIVDLI  +         F    GV +P +F CP+
Sbjct: 193 RMNAQVNNAKGKLDQINQIVDLISHVRDYLLKIEHFEPTTGVLIPPHFLCPL 244

[Close]

BLAST of Csa7G374730.1 vs. TrEMBL
Match: F6HZL0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g03520 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 5.2e-13
Identity = 50/112 (44.64%), Postives = 69/112 (61.61%), Query Frame = 1


Query: 49  CCSGLQSLKQERTARSTEAALISQRS-IGPNSEHL----QALHLTSNQELLKKTIAVEKE 108
           C   LQ L+Q+R +   E AL SQR  I P+++ L    ++L LTS QELLK+++AVE+E
Sbjct: 133 CMQKLQHLEQKRISEYIEQALRSQRDEIIPHTQQLAKIIESLSLTSKQELLKESVAVERE 192

Query: 109 RIDAESNNATEELHHIIQIVDLIIRI--------PFRGINGVSVPSYFHCPI 148
           R++A+ N    EL  I QIV+L+  I         F  INGV +PSYF CP+
Sbjct: 193 RMNAQVNKTAYELDQINQIVELVSHIRDCMVRLGGFEAINGVRIPSYFRCPL 244

[Close]

BLAST of Csa7G374730.1 vs. TAIR10
Match: AT3G54790.1 (AT3G54790.1 ARM repeat superfamily protein)

HSP 1 Score: 60.8 bits (146), Expect = 8.2e-10
Identity = 41/122 (33.61%), Postives = 65/122 (53.28%), Query Frame = 1


Query: 41  SIMQLEFKCCSGLQSLKQERTARST-EAALISQRS--IGPNSEHL----QALHLTSNQEL 100
           S+  +E +C    +S KQE T     E AL +Q+      ++ HL    Q L L SNQ+L
Sbjct: 126 SVQSVE-RCVQETESFKQEGTLMELMENALRNQKDDITSLDNNHLESIIQMLGLISNQDL 185

Query: 101 LKKTIAVEKERIDAESNNATEELHHIIQIVDLIIRIP--------FRGINGVSVPSYFHC 148
           LK++I VEKERI ++++ + E++    Q+++L++ I              G+S+P YF C
Sbjct: 186 LKESITVEKERIRSQASKSEEDMEQTEQLIELVLCIREHMLKTEFLEVAKGISIPPYFRC 245

[Close]

BLAST of Csa7G374730.1 vs. NCBI nr
Match: gi|700189497|gb|KGN44730.1| (hypothetical protein Csa_7G374730 [Cucumis sativus])

HSP 1 Score: 303.9 bits (777), Expect = 1.6e-79
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 1


Query: 1   MSCFIVNVSHWMQLFQELNAVTNSKLFTSDLRDCLEVVGVSIMQLEFKCCSGLQSLKQER 60
           MSCFIVNVSHWMQLFQELNAVTNSKLFTSDLRDCLEVVGVSIMQLEFKCCSGLQSLKQER
Sbjct: 1   MSCFIVNVSHWMQLFQELNAVTNSKLFTSDLRDCLEVVGVSIMQLEFKCCSGLQSLKQER 60

Query: 61  TARSTEAALISQRSIGPNSEHLQALHLTSNQELLKKTIAVEKERIDAESNNATEELHHII 120
           TARSTEAALISQRSIGPNSEHLQALHLTSNQELLKKTIAVEKERIDAESNNATEELHHII
Sbjct: 61  TARSTEAALISQRSIGPNSEHLQALHLTSNQELLKKTIAVEKERIDAESNNATEELHHII 120

Query: 121 QIVDLIIRIPFRGINGVSVPSYFHCPIVIGADS 154
           QIVDLIIRIPFRGINGVSVPSYFHCPIVIGADS
Sbjct: 121 QIVDLIIRIPFRGINGVSVPSYFHCPIVIGADS 153

[Close]

BLAST of Csa7G374730.1 vs. NCBI nr
Match: gi|659100738|ref|XP_008451242.1| (PREDICTED: U-box domain-containing protein 3 [Cucumis melo])

HSP 1 Score: 142.9 bits (359), Expect = 4.7e-31
Identity = 81/113 (71.68%), Postives = 88/113 (77.88%), Query Frame = 1


Query: 48  KCCSGLQSLKQERTARSTEAALISQRS-IGPNSEHL----QALHLTSNQELLKKTIAVEK 107
           KC  GLQSLKQER + S E ALISQRS IGPNSEHL    +ALHLTSNQELLK+TIAVEK
Sbjct: 132 KCLEGLQSLKQERISDSIEEALISQRSGIGPNSEHLLKLIEALHLTSNQELLKETIAVEK 191

Query: 108 ERIDAESNNATEELHHIIQIVDLIIRIP--------FRGINGVSVPSYFHCPI 148
           ERI+AE NNA +ELHHI QI+DLIIRI         F GINGVSVPSYF CP+
Sbjct: 192 ERINAERNNAKKELHHINQIMDLIIRIRDWMVRKDYFHGINGVSVPSYFRCPL 244

[Close]

BLAST of Csa7G374730.1 vs. NCBI nr
Match: gi|778727334|ref|XP_011659243.1| (PREDICTED: U-box domain-containing protein 3 [Cucumis sativus])

HSP 1 Score: 142.1 bits (357), Expect = 8.0e-31
Identity = 81/113 (71.68%), Postives = 87/113 (76.99%), Query Frame = 1


Query: 48  KCCSGLQSLKQERTARSTEAALISQRS-IGPNSEHL----QALHLTSNQELLKKTIAVEK 107
           KC  GLQSLKQER + S E ALISQRS IGPNSEHL    +ALHLTSNQELLK+TIAVEK
Sbjct: 132 KCLEGLQSLKQERISDSIEEALISQRSGIGPNSEHLLKLIEALHLTSNQELLKETIAVEK 191

Query: 108 ERIDAESNNATEELHHIIQIVDLIIRIP--------FRGINGVSVPSYFHCPI 148
           ERI+A  NNA EELHHI QI+DLIIRI         F GINGVSVPSYF CP+
Sbjct: 192 ERINAARNNAKEELHHINQIMDLIIRIRDWMVRKDYFHGINGVSVPSYFRCPL 244

[Close]

BLAST of Csa7G374730.1 vs. NCBI nr
Match: gi|590715742|ref|XP_007050278.1| (ARM repeat superfamily protein isoform 1 [Theobroma cacao])

HSP 1 Score: 82.8 bits (203), Expect = 5.7e-13
Identity = 51/112 (45.54%), Postives = 70/112 (62.50%), Query Frame = 1


Query: 49  CCSGLQSLKQERTARSTEAALISQRSIG-PNSEHL----QALHLTSNQELLKKTIAVEKE 108
           C   ++ LKQER + + E AL SQR+   P  +HL    ++L+LTSNQELLK+T+AVEKE
Sbjct: 133 CMREIKCLKQERVSENIEEALRSQRNDAIPCPDHLVEVIKSLNLTSNQELLKETVAVEKE 192

Query: 109 RIDAESNNATEELHHIIQIVDLIIRI--------PFRGINGVSVPSYFHCPI 148
           R++A+ NNA  +L  I QIVDLI  +         F    GV +P +F CP+
Sbjct: 193 RMNAQVNNAKGKLDQINQIVDLISHVRDYLLKIEHFEPTTGVLIPPHFLCPL 244

[Close]

BLAST of Csa7G374730.1 vs. NCBI nr
Match: gi|590715753|ref|XP_007050279.1| (ARM repeat superfamily protein isoform 2 [Theobroma cacao])

HSP 1 Score: 82.8 bits (203), Expect = 5.7e-13
Identity = 51/112 (45.54%), Postives = 70/112 (62.50%), Query Frame = 1


Query: 49  CCSGLQSLKQERTARSTEAALISQRSIG-PNSEHL----QALHLTSNQELLKKTIAVEKE 108
           C   ++ LKQER + + E AL SQR+   P  +HL    ++L+LTSNQELLK+T+AVEKE
Sbjct: 97  CMREIKCLKQERVSENIEEALRSQRNDAIPCPDHLVEVIKSLNLTSNQELLKETVAVEKE 156

Query: 109 RIDAESNNATEELHHIIQIVDLIIRI--------PFRGINGVSVPSYFHCPI 148
           R++A+ NNA  +L  I QIVDLI  +         F    GV +P +F CP+
Sbjct: 157 RMNAQVNNAKGKLDQINQIVDLISHVRDYLLKIEHFEPTTGVLIPPHFLCPL 208

The following BLAST results are available for this feature:

BLAST of Csa7G374730.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PUB3_ARATH	1.5e-08	33.61	U-box domain-containing protein 3 OS=Arabidopsis thaliana GN=PUB3 PE=2 SV=2	[more]

BLAST of Csa7G374730.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K4T7_CUCSA	1.1e-79	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G374730 PE=4 SV=1	[more]
A0A0A0K726_CUCSA	5.6e-31	71.68	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G374670 PE=4 SV=1	[more]
A0A061DQQ1_THECC	4.0e-13	45.54	ARM repeat superfamily protein isoform 2 OS=Theobroma cacao GN=TCM_004020 PE=4 S...	[more]
A0A061DNZ3_THECC	4.0e-13	45.54	ARM repeat superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_004020 PE=4 S...	[more]
F6HZL0_VITVI	5.2e-13	44.64	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g03520 PE=4 SV=...	[more]

BLAST of Csa7G374730.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G54790.1	8.2e-10	33.61	ARM repeat superfamily protein	[more]

BLAST of Csa7G374730.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700189497\|gb\|KGN44730.1\|	1.6e-79	100.00	hypothetical protein Csa_7G374730 [Cucumis sativus]	[more]
gi\|659100738\|ref\|XP_008451242.1\|	4.7e-31	71.68	PREDICTED: U-box domain-containing protein 3 [Cucumis melo]	[more]
gi\|778727334\|ref\|XP_011659243.1\|	8.0e-31	71.68	PREDICTED: U-box domain-containing protein 3 [Cucumis sativus]	[more]
gi\|590715742\|ref\|XP_007050278.1\|	5.7e-13	45.54	ARM repeat superfamily protein isoform 1 [Theobroma cacao]	[more]
gi\|590715753\|ref\|XP_007050279.1\|	5.7e-13	45.54	ARM repeat superfamily protein isoform 2 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003824	catalytic activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Csa7G374730	Csa7G374730	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Csa7G374730.1	Csa7G374730.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csa7G374730.1.cds3	Csa7G374730.1.cds3	CDS
Csa7G374730.1.cds2	Csa7G374730.1.cds2	CDS
Csa7G374730.1.cds1	Csa7G374730.1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR23315	BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAINING	coord: 53..147 score: 6.7
None	No IPR available	PANTHER	PTHR23315:SF119	U-BOX DOMAIN-CONTAINING PROTEIN 3	coord: 53..147 score: 6.7