Csa6G421750.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa6G421750.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 19508998 .. 19510700 (-)
Sequence length516
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCAGCAAAGCCGGACCCACCCGGGCGAACCCCTCATGGTCGGGCTCATGGTTGTGTGTACCCTTTGCCGCTGGGCTACGCTACCGGCCACCGAACCACGAACCACCAAGCGGCCCCACCCGTACGGTCGGACAATAAAGGAAATAAAGTGGAGTAAGTAGCGTAGATTTTATATTATTAATTTGTTTTACCTTTTTAGAAATGGCCTTTGACATCGTTCGCCATTCACCACCCACATCTAACATTGAAAACAGACGTTCTGATTTGAGATTTCAACCCCTCCAATCGCCATTTTCAAGACCTTTAGATCTGATCCATCCTCATCCACCTTCCTTCTTCTTCGAATTCCATCTGCATATTCTCTCTCATTTCCTCAATTATTTCCTCAGATTCTTCTTCTCAGGTCACCTGTTTCGGTATGTTGAGAATTGCAGATTCTTTTCTTGTATTTTGGAAATGAATTTACGCTTGCTTGCTTATGCACGATAATAATGCTTGTTCTAGTTAACTGATTTTGAATTGTTATTTTTATTTATTGTTTATTTATGCATTCTTGTTACTTTGATTGAGCTCGAGTTCATCCTTATCGATGCTTCATCTTGTTGATCACTGTTTGTTTCTTTAATTAGTTGCGTGTATATTTAATTAATTTGAAGTAGCGAGTCTCTGGAATAGTTTTTTTGAACTGTGCTATTTTGTTTACCTCCATGTGTGCAAATGTTTGCTGTTATGGACGCGCAGTGTTCACGCGCCTCGTTCATAATATCTCTTAAACGACGCACTTGTTGTGAGTCCTGATAACCGCTGATGCTAAAGCTTGATATTTAAGCCTGACTCACTACCTTAGTTTAGTTTGTGCTGCTTCTCTGAAGAATTATTGGAGGCGGGACGGAAGTAATAGAGAATCTTAGGATCTGTGCTGAATTGAAGGAAGTGATGGAGACCATGACTTATTATTGTTTGTTGGCTACTACACTTTAATCATTTGTAGACGAAAATGTTCATAGATCATGAGTTTGTACTTTCTTTTCCAAATTTGTTACGATTGGGAAGTTCCATGGAAGTTGGGTTCTGTGTGTATGTGTATTTAAATTTTGTTTTGGTTAAGAAAGAATTGTATTGAAAGATAGCAAGGCATGGCAAGGAGATCAAGGATAGGTTCTTTAATTTAGGGGAAGAGTTGCTACAAATCTCTGAAAGAGGGCCTGTCTTGGCATTATCATTATGCAATGAAGTCTGCACGCGTCTGTATGACTGGTCATTTTATATGTTCTGTACTCTGTATACCGTACAAGTCTTGTTCGACTCAATCTATCTTTATTTTTATTTCAATTCTTTATTGAATTTCACACAAAGTTTACAACGTGCTCTAGCCTGTCACAATGCATAAAGTTCCTGCTTTCTGTTTACTCATTTGCATCTGTCAGTAATTGTGACGAAGAGCATAGATGGTTTTATCATAGTAGAGAAAAGGAGATGACATGAAATTCTTTGGGTACAGAAAATCATAAACACGCAAGGGTTGATTCTATTGAGCCTGTAAGTCAAGAAGTCAGTGGTTTTCATAGAGTGCCATTTTTTCGAAGATGGTGTGACATAGAGGTACTGTCTCAGTGGATGCTCCATTAATCTATGCAGATTCAAGTGCTCAACACACTGGTTTCAAATTGTTTTCACTTAAACTGGGTCAGGTATTATAA

mRNA sequence

ATGGTCAGCAAAGCCGGACCCACCCGGGCGAACCCCTCATGGTCGGGCTCATGGTTGTGTGTACCCTTTGCCGCTGGGCTACGCTACCGGCCACCGAACCACGAACCACCAAGCGGCCCCACCCAAATGGCCTTTGACATCGTTCGCCATTCACCACCCACATCTAACATTGAAAACAGACGTTCTGATTTGAGATTTCAACCCCTCCAATCGCCATTTTCAAGACCTTTAGATCTGATCCATCCTCATCCACCTTCCTTCTTCTTCGAATTCCATCTGCATATTCTCTCTCATTTCCTCAATTATTTCCTCAGATTCTTCTTCTCAGGTCACCTGTTTCGCCTGACTCACTACCTTAGTTTAGTTTGTGCTGCTTCTCTGAAGAATTATTGGAGGCGGGACGGAAAAAATCATAAACACGCAAGGGTTGATTCTATTGAGCCTGTAAGTCAAGAAGTCAGTGGTTTTCATAGAGTGCCATTTTTTCGAAGATGGTGTGACATAGAGGTATTATAA

Coding sequence (CDS)

ATGGTCAGCAAAGCCGGACCCACCCGGGCGAACCCCTCATGGTCGGGCTCATGGTTGTGTGTACCCTTTGCCGCTGGGCTACGCTACCGGCCACCGAACCACGAACCACCAAGCGGCCCCACCCAAATGGCCTTTGACATCGTTCGCCATTCACCACCCACATCTAACATTGAAAACAGACGTTCTGATTTGAGATTTCAACCCCTCCAATCGCCATTTTCAAGACCTTTAGATCTGATCCATCCTCATCCACCTTCCTTCTTCTTCGAATTCCATCTGCATATTCTCTCTCATTTCCTCAATTATTTCCTCAGATTCTTCTTCTCAGGTCACCTGTTTCGCCTGACTCACTACCTTAGTTTAGTTTGTGCTGCTTCTCTGAAGAATTATTGGAGGCGGGACGGAAAAAATCATAAACACGCAAGGGTTGATTCTATTGAGCCTGTAAGTCAAGAAGTCAGTGGTTTTCATAGAGTGCCATTTTTTCGAAGATGGTGTGACATAGAGGTATTATAA

Protein sequence

MVSKAGPTRANPSWSGSWLCVPFAAGLRYRPPNHEPPSGPTQMAFDIVRHSPPTSNIENRRSDLRFQPLQSPFSRPLDLIHPHPPSFFFEFHLHILSHFLNYFLRFFFSGHLFRLTHYLSLVCAASLKNYWRRDGKNHKHARVDSIEPVSQEVSGFHRVPFFRRWCDIEVL*
Homology
[Close]
BLAST of Csa6G421750.1 vs. TrEMBL
Match: A0A0A0KJP7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G421750 PE=4 SV=1)

HSP 1 Score: 370.9 bits (951), Expect = 8.2e-100
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 1 

Query: 1   MVSKAGPTRANPSWSGSWLCVPFAAGLRYRPPNHEPPSGPTQMAFDIVRHSPPTSNIENR 60
           MVSKAGPTRANPSWSGSWLCVPFAAGLRYRPPNHEPPSGPTQMAFDIVRHSPPTSNIENR
Sbjct: 1   MVSKAGPTRANPSWSGSWLCVPFAAGLRYRPPNHEPPSGPTQMAFDIVRHSPPTSNIENR 60

Query: 61  RSDLRFQPLQSPFSRPLDLIHPHPPSFFFEFHLHILSHFLNYFLRFFFSGHLFRLTHYLS 120
           RSDLRFQPLQSPFSRPLDLIHPHPPSFFFEFHLHILSHFLNYFLRFFFSGHLFRLTHYLS
Sbjct: 61  RSDLRFQPLQSPFSRPLDLIHPHPPSFFFEFHLHILSHFLNYFLRFFFSGHLFRLTHYLS 120

Query: 121 LVCAASLKNYWRRDGKNHKHARVDSIEPVSQEVSGFHRVPFFRRWCDIEVL 172
           LVCAASLKNYWRRDGKNHKHARVDSIEPVSQEVSGFHRVPFFRRWCDIEVL
Sbjct: 121 LVCAASLKNYWRRDGKNHKHARVDSIEPVSQEVSGFHRVPFFRRWCDIEVL 171

[Close]
BLAST of Csa6G421750.1 vs. NCBI nr
Match: gi|700192777|gb|KGN47981.1| (hypothetical protein Csa_6G421750 [Cucumis sativus])

HSP 1 Score: 370.9 bits (951), Expect = 1.2e-99
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 1 

Query: 1   MVSKAGPTRANPSWSGSWLCVPFAAGLRYRPPNHEPPSGPTQMAFDIVRHSPPTSNIENR 60
           MVSKAGPTRANPSWSGSWLCVPFAAGLRYRPPNHEPPSGPTQMAFDIVRHSPPTSNIENR
Sbjct: 1   MVSKAGPTRANPSWSGSWLCVPFAAGLRYRPPNHEPPSGPTQMAFDIVRHSPPTSNIENR 60

Query: 61  RSDLRFQPLQSPFSRPLDLIHPHPPSFFFEFHLHILSHFLNYFLRFFFSGHLFRLTHYLS 120
           RSDLRFQPLQSPFSRPLDLIHPHPPSFFFEFHLHILSHFLNYFLRFFFSGHLFRLTHYLS
Sbjct: 61  RSDLRFQPLQSPFSRPLDLIHPHPPSFFFEFHLHILSHFLNYFLRFFFSGHLFRLTHYLS 120

Query: 121 LVCAASLKNYWRRDGKNHKHARVDSIEPVSQEVSGFHRVPFFRRWCDIEVL 172
           LVCAASLKNYWRRDGKNHKHARVDSIEPVSQEVSGFHRVPFFRRWCDIEVL
Sbjct: 121 LVCAASLKNYWRRDGKNHKHARVDSIEPVSQEVSGFHRVPFFRRWCDIEVL 171

The following BLAST results are available for this feature:
BLAST of Csa6G421750.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KJP7_CUCSA8.2e-100100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G421750 PE=4 SV=1[more]
BLAST of Csa6G421750.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700192777|gb|KGN47981.1|1.2e-99100.00hypothetical protein Csa_6G421750 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa6G421750Csa6G421750gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa6G421750.1Csa6G421750.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa6G421750.1.cds5Csa6G421750.1.cds5CDS
Csa6G421750.1.cds4Csa6G421750.1.cds4CDS
Csa6G421750.1.cds3Csa6G421750.1.cds3CDS
Csa6G421750.1.cds2Csa6G421750.1.cds2CDS
Csa6G421750.1.cds1Csa6G421750.1.cds1CDS