Csa6G170410 (gene) Cucumber (Chinese Long) v2
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGTGTTCCCAGAAGAAGAAATCACCAAACTCTTTAGAGTCCGAAAAACTGTGTTGCAGATGTTGAAAGACAGAGGCTATTTTGTTGGGGATTTCGAGCTTGATATGTCTAAAGTACAATTTAAGAATAAGTTTGGTGAGAACATGAAAAGAGAAGATCTGGTTATCAATAAATCCAAGAGAAATAATAGCTCTGATCAGGTATAGTTTCATACTACACAATGATAATCTCATTTATGTATGACTCTCTTATAACTATTTAGTTTTCAATTTTTAGTTTTTCAAGATTGTGTTTGATGCTCCCAACTCATTGACTATGATTTTCATTTTCTAATGTAAACATTGAATTCGGAGCAAGTTTCAATAGAAAAATGTTTTTAAAAATTACTATTCTTTAGTTTTCAAAACTTGGCTTAAATTTTGAAGACTCACGTAAAAAGAAGAATATAACGAAACATAGAAATCAATAGGTTTAAGTAATATTTACAAGCTTAATTTTCAAGAACCAAAAGCTTAGGGTGTGTTTGGCCCAAGGAGTTGTGAAATATAAGGTAAGAGCTGAGAAGTAGTAGTTGTGAACTTCACTCCTTGTTTGGCTCGAGGAGTTGGTGGGTCCTACTCCTAAATAACTTCAATTTTATATGGTGGACCTCAAAGTTCACAACTCTCTGAGTTTCATTACTCCTTAGTCCTCAATATTTCACTCCGTATCCCAAACACTTGTCTGGCTCACCAACTTCTAAGTTAGTGTTAAATATTTCAACCTCAATGGTTTTCACTACCAAAGTTGCACATTTATTAAGGAACTCCGTCTTGCAATTCTGTAACCCCAAACACATGGTTAATAACTATAACATATTAACTCCAAACTTCCTCACTCAACTTAGCACCCCAACACCCCTCAATTGTTATAAAACAGGGTCTCATTGACTCATGAAATTTATTGTGTATTTAAACATGTTTAAACTTTACCTTAATAAAGGGTTGCAGTAAGTTTCCTCGGAAGAAGTTTCTATTTAAGTCATTCTCAAGTACTGTTACTGTTTGACATGGAAAATAGTTAACTATCGAAAAATATTTACCACATTTATATAAAGTTTGGTTATAGGGATGCACAGGTTATTTGTTAACCCTTTTATTTGTTACCTTCTTTTGATTTATGACTCTTTTACACAGATATATGTTTTCTTTCCTGAAGAGCCGAAGGTTGGTATAAAGATAGTGGAAACTTATGTAGGTCGTATGAAATCAGAGAATGTTTTCAGAGCAATATTTGTTGTTCAACTGAATTTGACCCCCTTTGCCCGAAATAAAATCGCCGAATTATCGTCTTCCAAACTCCATTTGGAAGTTTTCCAGGTAAAAGTAAAATCTCTTATAGTTTTTGGAGCCTTTTAATGTTGAATAGATTATTTTAATGTCATCACATGCTACAAATTTAACGAGAACTAGAGAGGATTTTCTATTTTCCTATCCCAAAACCAGTTCTCTCGTACTTTTGTTGTCTCTCACAACAACAATGATGGGGGGTGGGGGGGGGGGGGGGGGGGAGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGCGGTGGGGTGGGGGAGAAGAATGGTGACGTTAGTTTGTAATTATGTGATTTTCAGTTTCCATATAATAATGTCTTGCCTACCTTCTTATTTTGCTGACGTTAACGTTTACCTCTCTGTCATTTTTTTATGCAGGAAACAGAATTGTTGGTTAACATCAAAGAGCATGTTCTCATTCCCGAGCACCAGACACTCACAGATGAAGAGAAGAAAACGTTGTTGGGGAGGTATACGGTGAAAGAAACACAAGTGAGTTTCATTTTATTTGATCTTATTTTCTTGAAATACAAGAATATTGTGAGAATTGTGTTCCATAAAATATGTTGAAATAACTTTGGTAGCTTGGCCCGTGTTGAATAAGATTTTTGTAAATGATGAAGATATTAGGAAATCAGTTCAAGTCATGATGATTGCCTACCTAAAATTTAATTTTCTACACGTTACTCTGACAATCAAATATAGTAACGTTGGATGGTTGTTTTGTTAGAATAGTTAAGATGCGTTCAAGTTGGCTCTAACAGTGTTGGATACATATTGAAAATTGGTATACGTTAGTTTTTAACAAACATTTTGCATTTTGTCTCAGCTACCTCGCATGCAAGTTACCGATCCAATTTCTAGATATTATGGGCTGAAGCGTGGACATGTAGTGAAGATCATCCGACCAAGCGAAACTGCTGGAAGATATGTGACTTATAGATATGTTGTTTGA ATGGTGTTCCCAGAAGAAGAAATCACCAAACTCTTTAGAGTCCGAAAAACTGTGTTGCAGATGTTGAAAGACAGAGGCTATTTTGTTGGGGATTTCGAGCTTGATATGTCTAAAGTACAATTTAAGAATAAGTTTGGTGAGAACATGAAAAGAGAAGATCTGGTTATCAATAAATCCAAGAGAAATAATAGCTCTGATCAGATATATGTTTTCTTTCCTGAAGAGCCGAAGGTTGGTATAAAGATAGTGGAAACTTATGTAGGTCGTATGAAATCAGAGAATGTTTTCAGAGCAATATTTGTTGTTCAACTGAATTTGACCCCCTTTGCCCGAAATAAAATCGCCGAATTATCGTCTTCCAAACTCCATTTGGAAGTTTTCCAGGAAACAGAATTGTTGGTTAACATCAAAGAGCATGTTCTCATTCCCGAGCACCAGACACTCACAGATGAAGAGAAGAAAACGTTGTTGGGGAGGTATACGGTGAAAGAAACACAACTACCTCGCATGCAAGTTACCGATCCAATTTCTAGATATTATGGGCTGAAGCGTGGACATGTAGTGAAGATCATCCGACCAAGCGAAACTGCTGGAAGATATGTGACTTATAGATATGTTGTTTGA ATGGTGTTCCCAGAAGAAGAAATCACCAAACTCTTTAGAGTCCGAAAAACTGTGTTGCAGATGTTGAAAGACAGAGGCTATTTTGTTGGGGATTTCGAGCTTGATATGTCTAAAGTACAATTTAAGAATAAGTTTGGTGAGAACATGAAAAGAGAAGATCTGGTTATCAATAAATCCAAGAGAAATAATAGCTCTGATCAGATATATGTTTTCTTTCCTGAAGAGCCGAAGGTTGGTATAAAGATAGTGGAAACTTATGTAGGTCGTATGAAATCAGAGAATGTTTTCAGAGCAATATTTGTTGTTCAACTGAATTTGACCCCCTTTGCCCGAAATAAAATCGCCGAATTATCGTCTTCCAAACTCCATTTGGAAGTTTTCCAGGAAACAGAATTGTTGGTTAACATCAAAGAGCATGTTCTCATTCCCGAGCACCAGACACTCACAGATGAAGAGAAGAAAACGTTGTTGGGGAGGTATACGGTGAAAGAAACACAACTACCTCGCATGCAAGTTACCGATCCAATTTCTAGATATTATGGGCTGAAGCGTGGACATGTAGTGAAGATCATCCGACCAAGCGAAACTGCTGGAAGATATGTGACTTATAGATATGTTGTTTGA MVFPEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKVQFKNKFGENMKREDLVINKSKRNNSSDQIYVFFPEEPKVGIKIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELSSSKLHLEVFQETELLVNIKEHVLIPEHQTLTDEEKKTLLGRYTVKETQLPRMQVTDPISRYYGLKRGHVVKIIRPSETAGRYVTYRYVV*
BLAST of Csa6G170410 vs. Swiss-Prot
Match: RPB5A_ARATH (DNA-directed RNA polymerases II and IV subunit 5A OS=Arabidopsis thaliana GN=NRPB5A PE=1 SV=1) HSP 1 Score: 305.4 bits (781), Expect = 4.6e-82 Identity = 150/203 (73.89%), Postives = 175/203 (86.21%), Query Frame = 1
BLAST of Csa6G170410 vs. Swiss-Prot
Match: RPAB1_RAT (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Rattus norvegicus GN=Polr2e PE=2 SV=1) HSP 1 Score: 211.8 bits (538), Expect = 6.9e-54 Identity = 104/207 (50.24%), Postives = 145/207 (70.05%), Query Frame = 1
BLAST of Csa6G170410 vs. Swiss-Prot
Match: RPAB1_MOUSE (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Mus musculus GN=Polr2e PE=1 SV=1) HSP 1 Score: 211.8 bits (538), Expect = 6.9e-54 Identity = 104/207 (50.24%), Postives = 145/207 (70.05%), Query Frame = 1
BLAST of Csa6G170410 vs. Swiss-Prot
Match: RPAB1_PONAB (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Pongo abelii GN=POLR2E PE=2 SV=1) HSP 1 Score: 210.3 bits (534), Expect = 2.0e-53 Identity = 103/207 (49.76%), Postives = 144/207 (69.57%), Query Frame = 1
BLAST of Csa6G170410 vs. Swiss-Prot
Match: RPAB1_HUMAN (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Homo sapiens GN=POLR2E PE=1 SV=4) HSP 1 Score: 208.4 bits (529), Expect = 7.7e-53 Identity = 103/207 (49.76%), Postives = 143/207 (69.08%), Query Frame = 1
BLAST of Csa6G170410 vs. TrEMBL
Match: A0A0A0KF69_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G170410 PE=3 SV=1) HSP 1 Score: 409.5 bits (1051), Expect = 2.5e-111 Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 1
BLAST of Csa6G170410 vs. TrEMBL
Match: A0A0A0K8L9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G374590 PE=3 SV=1) HSP 1 Score: 335.1 bits (858), Expect = 6.0e-89 Identity = 165/207 (79.71%), Postives = 185/207 (89.37%), Query Frame = 1
BLAST of Csa6G170410 vs. TrEMBL
Match: A0A0D2PK01_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G007200 PE=3 SV=1) HSP 1 Score: 331.6 bits (849), Expect = 6.7e-88 Identity = 165/207 (79.71%), Postives = 186/207 (89.86%), Query Frame = 1
BLAST of Csa6G170410 vs. TrEMBL
Match: A0A0B0PQS6_GOSAR (Dna-directed rna polymerases i, ii, and iii subunit rpabc1 OS=Gossypium arboreum GN=F383_00256 PE=3 SV=1) HSP 1 Score: 331.3 bits (848), Expect = 8.7e-88 Identity = 164/207 (79.23%), Postives = 186/207 (89.86%), Query Frame = 1
BLAST of Csa6G170410 vs. TrEMBL
Match: W9RWL5_9ROSA (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Morus notabilis GN=L484_003651 PE=3 SV=1) HSP 1 Score: 329.3 bits (843), Expect = 3.3e-87 Identity = 160/206 (77.67%), Postives = 186/206 (90.29%), Query Frame = 1
BLAST of Csa6G170410 vs. TAIR10
Match: AT3G22320.1 (AT3G22320.1 Eukaryotic rpb5 RNA polymerase subunit family protein) HSP 1 Score: 305.4 bits (781), Expect = 2.6e-83 Identity = 150/203 (73.89%), Postives = 175/203 (86.21%), Query Frame = 1
BLAST of Csa6G170410 vs. TAIR10
Match: AT5G57980.1 (AT5G57980.1 RNA polymerase II fifth largest subunit, C) HSP 1 Score: 186.8 bits (473), Expect = 1.3e-47 Identity = 96/207 (46.38%), Postives = 143/207 (69.08%), Query Frame = 1
BLAST of Csa6G170410 vs. TAIR10
Match: AT2G41340.1 (AT2G41340.1 RNA polymerase II fifth largest subunit, D) HSP 1 Score: 134.0 bits (336), Expect = 1.0e-31 Identity = 80/201 (39.80%), Postives = 122/201 (60.70%), Query Frame = 1
BLAST of Csa6G170410 vs. TAIR10
Match: AT3G57080.1 (AT3G57080.1 Eukaryotic rpb5 RNA polymerase subunit family protein) HSP 1 Score: 128.6 bits (322), Expect = 4.3e-30 Identity = 74/201 (36.82%), Postives = 113/201 (56.22%), Query Frame = 1
BLAST of Csa6G170410 vs. TAIR10
Match: AT3G54490.1 (AT3G54490.1 RNA polymerase II fifth largest subunit, E) HSP 1 Score: 110.9 bits (276), Expect = 9.4e-25 Identity = 67/202 (33.17%), Postives = 108/202 (53.47%), Query Frame = 1
BLAST of Csa6G170410 vs. NCBI nr
Match: gi|449450868|ref|XP_004143184.1| (PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A-like [Cucumis sativus]) HSP 1 Score: 409.5 bits (1051), Expect = 3.6e-111 Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 1
BLAST of Csa6G170410 vs. NCBI nr
Match: gi|659112918|ref|XP_008456369.1| (PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A-like isoform X1 [Cucumis melo]) HSP 1 Score: 397.1 bits (1019), Expect = 1.9e-107 Identity = 199/207 (96.14%), Postives = 204/207 (98.55%), Query Frame = 1
BLAST of Csa6G170410 vs. NCBI nr
Match: gi|659112921|ref|XP_008456371.1| (PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A-like isoform X2 [Cucumis melo]) HSP 1 Score: 359.4 bits (921), Expect = 4.3e-96 Identity = 179/187 (95.72%), Postives = 184/187 (98.40%), Query Frame = 1
BLAST of Csa6G170410 vs. NCBI nr
Match: gi|659100689|ref|XP_008451219.1| (PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A [Cucumis melo]) HSP 1 Score: 337.0 bits (863), Expect = 2.3e-89 Identity = 166/207 (80.19%), Postives = 186/207 (89.86%), Query Frame = 1
BLAST of Csa6G170410 vs. NCBI nr
Match: gi|449462431|ref|XP_004148944.1| (PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A-like [Cucumis sativus]) HSP 1 Score: 335.1 bits (858), Expect = 8.7e-89 Identity = 165/207 (79.71%), Postives = 185/207 (89.37%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |