Csa6G112460 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G112460
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 7742701 .. 7742994 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGGAGATTGACGAGGGGGATGAAGAATACAGAAAATGGAGGTGAAGATTGGATAAATTTCGGGCTTTTATTGACTTAAAATCAGGAACAATTGCATTTAGAGAACAGTTGGAGCGCAGTTGCGCACGAGCATGCTTCCTCAGCGCTCTGGTGCTCAAAACGACGCCATGCTTTTGTAAGATTGTGGCTAAGAGTGCTGAACAGAGCAGTTGCGCTCTGCCCAGCGCCAGTTGTGTGCCTCCCCTTGCTTTTGACGTAATTAGGATATTTAAGTGCATAAATATTCACTAA

mRNA sequence

ATGGGGGAGATTGACGAGGGGGATGAAGAATACAGAAAATGGAGCGCTCTGGTGCTCAAAACGACGCCATGCTTTTGTAAGATTGTGGCTAAGAGTGCTGAACAGAGCAGTTGCGCTCTGCCCAGCGCCAGTTGTGTGCCTCCCCTTGCTTTTGACGTAATTAGGATATTTAAGTGCATAAATATTCACTAA

Coding sequence (CDS)

ATGGGGGAGATTGACGAGGGGGATGAAGAATACAGAAAATGGAGCGCTCTGGTGCTCAAAACGACGCCATGCTTTTGTAAGATTGTGGCTAAGAGTGCTGAACAGAGCAGTTGCGCTCTGCCCAGCGCCAGTTGTGTGCCTCCCCTTGCTTTTGACGTAATTAGGATATTTAAGTGCATAAATATTCACTAA

Protein sequence

MGEIDEGDEEYRKWSALVLKTTPCFCKIVAKSAEQSSCALPSASCVPPLAFDVIRIFKCINIH*
Homology
[Close]
BLAST of Csa6G112460 vs. TrEMBL
Match: A0A0A0KAT9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G112460 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 4.8e-29
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 1 

Query: 1  MGEIDEGDEEYRKWSALVLKTTPCFCKIVAKSAEQSSCALPSASCVPPLAFDVIRIFKCI 60
          MGEIDEGDEEYRKWSALVLKTTPCFCKIVAKSAEQSSCALPSASCVPPLAFDVIRIFKCI
Sbjct: 1  MGEIDEGDEEYRKWSALVLKTTPCFCKIVAKSAEQSSCALPSASCVPPLAFDVIRIFKCI 60

Query: 61 NIH 64
          NIH
Sbjct: 61 NIH 63

[Close]
BLAST of Csa6G112460 vs. NCBI nr
Match: gi|700191404|gb|KGN46608.1| (hypothetical protein Csa_6G112460 [Cucumis sativus])

HSP 1 Score: 134.4 bits (337), Expect = 6.9e-29
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 1 

Query: 1  MGEIDEGDEEYRKWSALVLKTTPCFCKIVAKSAEQSSCALPSASCVPPLAFDVIRIFKCI 60
          MGEIDEGDEEYRKWSALVLKTTPCFCKIVAKSAEQSSCALPSASCVPPLAFDVIRIFKCI
Sbjct: 1  MGEIDEGDEEYRKWSALVLKTTPCFCKIVAKSAEQSSCALPSASCVPPLAFDVIRIFKCI 60

Query: 61 NIH 64
          NIH
Sbjct: 61 NIH 63

The following BLAST results are available for this feature:
BLAST of Csa6G112460 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KAT9_CUCSA4.8e-29100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G112460 PE=4 SV=1[more]
BLAST of Csa6G112460 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700191404|gb|KGN46608.1|6.9e-29100.00hypothetical protein Csa_6G112460 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G112460.1Csa6G112460.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa6G112460Cucurbita maxima (Rimu)cmacuB141
Csa6G112460Cucurbita maxima (Rimu)cmacuB521
Csa6G112460Cucurbita maxima (Rimu)cmacuB555
Csa6G112460Cucurbita maxima (Rimu)cmacuB618
Csa6G112460Cucurbita moschata (Rifu)cmocuB130
Csa6G112460Cucurbita moschata (Rifu)cmocuB513
Csa6G112460Cucurbita moschata (Rifu)cmocuB546
Csa6G112460Cucurbita moschata (Rifu)cmocuB611
Csa6G112460Melon (DHL92) v3.5.1cumeB425
Csa6G112460Melon (DHL92) v3.5.1cumeB448
Csa6G112460Melon (DHL92) v3.5.1cumeB461
Csa6G112460Watermelon (Charleston Gray)cuwcgB443
Csa6G112460Watermelon (Charleston Gray)cuwcgB453
Csa6G112460Watermelon (97103) v1cuwmB516
Csa6G112460Cucurbita pepo (Zucchini)cpecuB250
Csa6G112460Cucurbita pepo (Zucchini)cpecuB292
Csa6G112460Cucurbita pepo (Zucchini)cpecuB689
Csa6G112460Cucurbita pepo (Zucchini)cpecuB754
Csa6G112460Bottle gourd (USVL1VR-Ls)culsiB415
Csa6G112460Bottle gourd (USVL1VR-Ls)culsiB428
Csa6G112460Cucumber (Gy14) v2cgybcuB148
Csa6G112460Cucumber (Gy14) v2cgybcuB282
Csa6G112460Cucumber (Gy14) v2cgybcuB321
Csa6G112460Melon (DHL92) v3.6.1cumedB405
Csa6G112460Melon (DHL92) v3.6.1cumedB442
Csa6G112460Silver-seed gourdcarcuB0227
Csa6G112460Silver-seed gourdcarcuB0378
Csa6G112460Silver-seed gourdcarcuB0823
Csa6G112460Silver-seed gourdcarcuB1079
Csa6G112460Watermelon (97103) v2cuwmbB432
Csa6G112460Watermelon (97103) v2cuwmbB443
Csa6G112460Wax gourdcuwgoB561
Csa6G112460Wax gourdcuwgoB608
Csa6G112460Cucumber (Chinese Long) v2cucuB126
Csa6G112460Cucumber (Chinese Long) v2cucuB171
Csa6G112460Cucumber (Gy14) v1cgycuB110
Csa6G112460Cucumber (Gy14) v1cgycuB155