Csa6G103510.1 (mRNA) Cucumber (Chinese Long) v2
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GCCAAAAAAAACTCAAAACCTTTTTTCATATCTTTGCAGTACCCTTACGATATCCTATCTCTTTTGCTTTCTCCTTTAGTCCTTTTTAACACAAATACTAAAATTTCTCAAAACAAAGAAACATATGTTAACTATGGAGTGTAAACCACAACAAAGAGACCACAATTCTTCGTTTCCAAATCTACCATTATTTTCAATCCCACACCTATCGCCAATGGACTCACCACAACATTCTGGGATGCTAACTCCACCAATCTACACCGCCGTCTCGGTCCCGTTCTGGTGGGAAGAAGAGCCAGGCAAGCCTAGGTTTAGTACCGCCGTTTCCGTCTCTGCCTCTCCCAGCCTAGAGTTGCCTCCTAGGCTTTTGGTGCCAAGATCGGAGTGTAGTTCTTCCTTTAGATTTGATGAGAAGAGTTCTTTGTTTATGAAGAAAAGAGGATGGTTTGGTTCATGGAGAAAAAGGGGTTTGAATTTGAGAGGGAAAAGAGAGCAAATTGGAACTGGAGGGCTTGTGTTTCCATCTTTGGAATTGGAAGAGAGTCTTAGTTCAAAAGTGGAAGCTTCAAGGTTTAGAAGGAATGGGAGCTTTTCAAGCTTGATGAGTAGTACTCAAATTAAGCCTCATTTTTGGGTTAAGTATTTCCTCAATTAATTGTGTGTTTGATTAAGTCTTCCTATAGATTCATTTTGATTTTTCAAAAAAGGTTAATTAGTGTTCGATCTCACAAATTAGAAAAGAGTTAAAATTTAGTCCATATGATTTTAAAAGTTAAAATTTACAATTCGTTTGATAAAAACCTATCTCGTAATTAAATAAGTTTTTAGAGTTTCATAAAATTATCCATACATATCAATTGTTTATAGTGGCTAAATTCTAATTATAAATTATATAAAAAAATCTAAACTTTTCTTTTTCTTATGATAGGTGGCTTAACTACTTTATATATGTTAACTTTTTGGTGTTGCAGGAAAGTGTATGTGAAGGTTTGAAGCATATAGTTCCATCATGGAGAAGCAGAAGGATGAAAAGAGAGACTTAGTTTGATTTTGTGTTGTTAGATGTAATTTTCGACCCATTGCAATAATGGAAGTTCCAAAGTCTGTTGATATCTATGTGCTGCTATTTGTTGTGCACATTCATATATAATGCTAGTTTAATTAGCAAGTTGTGTTTTAATTTCTCGATGTGTTTTCAAGACTGTTTCCATAACATATATAAATGGTGTAAACTTTGCTCTTAGCCTTATCTATAACATATGGGCT ATGTTAACTATGGAGTGTAAACCACAACAAAGAGACCACAATTCTTCGTTTCCAAATCTACCATTATTTTCAATCCCACACCTATCGCCAATGGACTCACCACAACATTCTGGGATGCTAACTCCACCAATCTACACCGCCGTCTCGGTCCCGTTCTGGTGGGAAGAAGAGCCAGGCAAGCCTAGGTTTAGTACCGCCGTTTCCGTCTCTGCCTCTCCCAGCCTAGAGTTGCCTCCTAGGCTTTTGGTGCCAAGATCGGAGTGTAGTTCTTCCTTTAGATTTGATGAGAAGAGTTCTTTGTTTATGAAGAAAAGAGGATGGTTTGGTTCATGGAGAAAAAGGGGTTTGAATTTGAGAGGGAAAAGAGAGCAAATTGGAACTGGAGGGCTTGTGTTTCCATCTTTGGAATTGGAAGAGAGTCTTAGTTCAAAAGTGGAAGCTTCAAGGTTTAGAAGGAATGGGAGCTTTTCAAGCTTGATGAGTAGTACTCAAATTAAGCCTCATTTTTGGGAAAGTGTATGTGAAGGTTTGAAGCATATAGTTCCATCATGGAGAAGCAGAAGGATGAAAAGAGAGACTTAG ATGTTAACTATGGAGTGTAAACCACAACAAAGAGACCACAATTCTTCGTTTCCAAATCTACCATTATTTTCAATCCCACACCTATCGCCAATGGACTCACCACAACATTCTGGGATGCTAACTCCACCAATCTACACCGCCGTCTCGGTCCCGTTCTGGTGGGAAGAAGAGCCAGGCAAGCCTAGGTTTAGTACCGCCGTTTCCGTCTCTGCCTCTCCCAGCCTAGAGTTGCCTCCTAGGCTTTTGGTGCCAAGATCGGAGTGTAGTTCTTCCTTTAGATTTGATGAGAAGAGTTCTTTGTTTATGAAGAAAAGAGGATGGTTTGGTTCATGGAGAAAAAGGGGTTTGAATTTGAGAGGGAAAAGAGAGCAAATTGGAACTGGAGGGCTTGTGTTTCCATCTTTGGAATTGGAAGAGAGTCTTAGTTCAAAAGTGGAAGCTTCAAGGTTTAGAAGGAATGGGAGCTTTTCAAGCTTGATGAGTAGTACTCAAATTAAGCCTCATTTTTGGGAAAGTGTATGTGAAGGTTTGAAGCATATAGTTCCATCATGGAGAAGCAGAAGGATGAAAAGAGAGACTTAG MLTMECKPQQRDHNSSFPNLPLFSIPHLSPMDSPQHSGMLTPPIYTAVSVPFWWEEEPGKPRFSTAVSVSASPSLELPPRLLVPRSECSSSFRFDEKSSLFMKKRGWFGSWRKRGLNLRGKREQIGTGGLVFPSLELEESLSSKVEASRFRRNGSFSSLMSSTQIKPHFWESVCEGLKHIVPSWRSRRMKRET*
BLAST of Csa6G103510.1 vs. TrEMBL
Match: A0A0A0KDR5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G103510 PE=4 SV=1) HSP 1 Score: 400.6 bits (1028), Expect = 1.1e-108 Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 1
BLAST of Csa6G103510.1 vs. TrEMBL
Match: E5GCM9_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1) HSP 1 Score: 228.8 bits (582), Expect = 5.7e-57 Identity = 114/121 (94.21%), Postives = 116/121 (95.87%), Query Frame = 1
BLAST of Csa6G103510.1 vs. TrEMBL
Match: A0A068UKB7_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00027699001 PE=4 SV=1) HSP 1 Score: 129.4 bits (324), Expect = 4.7e-27 Identity = 95/238 (39.92%), Postives = 121/238 (50.84%), Query Frame = 1
BLAST of Csa6G103510.1 vs. TrEMBL
Match: B9SBF5_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0716950 PE=4 SV=1) HSP 1 Score: 123.2 bits (308), Expect = 3.4e-25 Identity = 92/236 (38.98%), Postives = 120/236 (50.85%), Query Frame = 1
BLAST of Csa6G103510.1 vs. TrEMBL
Match: A0A061DTJ6_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_005124 PE=4 SV=1) HSP 1 Score: 121.3 bits (303), Expect = 1.3e-24 Identity = 92/237 (38.82%), Postives = 117/237 (49.37%), Query Frame = 1
BLAST of Csa6G103510.1 vs. TAIR10
Match: AT4G27810.1 (AT4G27810.1 unknown protein) HSP 1 Score: 75.1 bits (183), Expect = 5.3e-14 Identity = 65/188 (34.57%), Postives = 81/188 (43.09%), Query Frame = 1
BLAST of Csa6G103510.1 vs. TAIR10
Match: AT2G46535.1 (AT2G46535.1 unknown protein) HSP 1 Score: 68.9 bits (167), Expect = 3.8e-12 Identity = 49/161 (30.43%), Postives = 77/161 (47.83%), Query Frame = 1
BLAST of Csa6G103510.1 vs. TAIR10
Match: AT5G53030.1 (AT5G53030.1 unknown protein) HSP 1 Score: 56.6 bits (135), Expect = 2.0e-08 Identity = 35/80 (43.75%), Postives = 43/80 (53.75%), Query Frame = 1
BLAST of Csa6G103510.1 vs. TAIR10
Match: AT4G00950.1 (AT4G00950.1 Protein of unknown function (DUF688)) HSP 1 Score: 50.1 bits (118), Expect = 1.8e-06 Identity = 34/81 (41.98%), Postives = 44/81 (54.32%), Query Frame = 1
BLAST of Csa6G103510.1 vs. TAIR10
Match: AT3G61840.1 (AT3G61840.1 Protein of unknown function (DUF688)) HSP 1 Score: 49.7 bits (117), Expect = 2.4e-06 Identity = 37/119 (31.09%), Postives = 54/119 (45.38%), Query Frame = 1
BLAST of Csa6G103510.1 vs. NCBI nr
Match: gi|778712023|ref|XP_004140632.2| (PREDICTED: uncharacterized protein At4g00950 [Cucumis sativus]) HSP 1 Score: 400.6 bits (1028), Expect = 1.6e-108 Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 1
BLAST of Csa6G103510.1 vs. NCBI nr
Match: gi|659119638|ref|XP_008459763.1| (PREDICTED: uncharacterized protein At4g00950 isoform X1 [Cucumis melo]) HSP 1 Score: 369.0 bits (946), Expect = 5.1e-99 Identity = 181/195 (92.82%), Postives = 187/195 (95.90%), Query Frame = 1
BLAST of Csa6G103510.1 vs. NCBI nr
Match: gi|659119640|ref|XP_008459764.1| (PREDICTED: uncharacterized protein At4g00950 isoform X2 [Cucumis melo]) HSP 1 Score: 323.6 bits (828), Expect = 2.4e-85 Identity = 160/172 (93.02%), Postives = 164/172 (95.35%), Query Frame = 1
BLAST of Csa6G103510.1 vs. NCBI nr
Match: gi|307136421|gb|ADN34228.1| (hypothetical protein [Cucumis melo subsp. melo]) HSP 1 Score: 228.8 bits (582), Expect = 8.2e-57 Identity = 114/121 (94.21%), Postives = 116/121 (95.87%), Query Frame = 1
BLAST of Csa6G103510.1 vs. NCBI nr
Match: gi|1009142404|ref|XP_015888705.1| (PREDICTED: uncharacterized protein At4g00950 [Ziziphus jujuba]) HSP 1 Score: 141.0 bits (354), Expect = 2.2e-30 Identity = 95/229 (41.48%), Postives = 126/229 (55.02%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
|