Csa5G054060 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa5G054060
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionProtein RALF-like 28; contains IPR008801 (Rapid ALkalinization Factor)
LocationChr5 : 1757914 .. 1758451 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAACCCATTCCCTCGTTCCTTTCACCCTTCATTCAAAATAAAATTTGAAGAATAGAAAGGTCAATACCAAAAAAAGGTTAAAATGGCAGGCAACACCAACAAAACCCTTGCTATTGTGATGGTTGCTATGATCATGGTTTGTTCATTGATGGAAAACCCAACGAACGCAACCTCTCTCGATTATGGTGCCATTGGTAAAGGAGACGCAAGATGTAAAGATGGTAAATGTGAAATATTAGGAGATCCAGCCAATAATTATACAAGAGGATGTGAGCCTGAAGAACACTGTAGATCTGGATCACCTGGTCAATGATTCACAACATTTGCCTTCTACATCTCTATTCCACCATTCTATATCCTATCTCTCTTCCAATTATGACCATGGTGTAAAACAAGTGCATGTCATTCATTCATATATGGTATTGACCGGACATTTCTTTGATATTTAATTTATTAATTCAATGGTTTTATTAATATGTTGGATTTGTTATATCTTCCATTTCTTTGCGTATGTTTCTTAATATTCTTTTCAATTTTC

mRNA sequence

ATGGCAGGCAACACCAACAAAACCCTTGCTATTGTGATGGTTGCTATGATCATGGTTTGTTCATTGATGGAAAACCCAACGAACGCAACCTCTCTCGATTATGGTGCCATTGGTAAAGGAGACGCAAGATGTAAAGATGGTAAATGTGAAATATTAGGAGATCCAGCCAATAATTATACAAGAGGATGTGAGCCTGAAGAACACTGTAGATCTGGATCACCTGGTCAATGA

Coding sequence (CDS)

ATGGCAGGCAACACCAACAAAACCCTTGCTATTGTGATGGTTGCTATGATCATGGTTTGTTCATTGATGGAAAACCCAACGAACGCAACCTCTCTCGATTATGGTGCCATTGGTAAAGGAGACGCAAGATGTAAAGATGGTAAATGTGAAATATTAGGAGATCCAGCCAATAATTATACAAGAGGATGTGAGCCTGAAGAACACTGTAGATCTGGATCACCTGGTCAATGA

Protein sequence

MAGNTNKTLAIVMVAMIMVCSLMENPTNATSLDYGAIGKGDARCKDGKCEILGDPANNYTRGCEPEEHCRSGSPGQ*
Homology
[Close]
BLAST of Csa5G054060 vs. TrEMBL
Match: A0A0A0KLD0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G054060 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 1.2e-37
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1 

Query: 1  MAGNTNKTLAIVMVAMIMVCSLMENPTNATSLDYGAIGKGDARCKDGKCEILGDPANNYT 60
          MAGNTNKTLAIVMVAMIMVCSLMENPTNATSLDYGAIGKGDARCKDGKCEILGDPANNYT
Sbjct: 1  MAGNTNKTLAIVMVAMIMVCSLMENPTNATSLDYGAIGKGDARCKDGKCEILGDPANNYT 60

Query: 61 RGCEPEEHCRSGSPGQ 77
          RGCEPEEHCRSGSPGQ
Sbjct: 61 RGCEPEEHCRSGSPGQ 76

[Close]
BLAST of Csa5G054060 vs. TrEMBL
Match: A0A0A0KJT5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G511800 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 5.1e-33
Identity = 67/75 (89.33%), Postives = 70/75 (93.33%), Query Frame = 1 

Query: 1  MAGNTNKTLAIVMVAMIMVCSLMENPTNATSLDYGAIGKGDARCKDGKCEILGDPANNYT 60
          MAGNTNKTL I+M+AMIM CSL+ENPTNATSL YG IGKGDARCKDGKCEILGDPANNYT
Sbjct: 1  MAGNTNKTLVILMIAMIMACSLIENPTNATSLGYGVIGKGDARCKDGKCEILGDPANNYT 60

Query: 61 RGCEPEEHCRSGSPG 76
          RGCEPEEHCRSGS G
Sbjct: 61 RGCEPEEHCRSGSSG 75

[Close]
BLAST of Csa5G054060 vs. TrEMBL
Match: A0A0D2SKN2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G272100 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.4e-06
Identity = 30/72 (41.67%), Postives = 42/72 (58.33%), Query Frame = 1 

Query: 3  GNTNKTLAIVMVAMIMVCSLMENPTNATSLDYGAIGKGD--ARCKDGKCEILGDPANNYT 62
          G   K + + + AM++   LMEN  NA +L+YGAI +GD    C+ G    + +PAN Y 
Sbjct: 2  GVEKKMMVVWICAMVVSSMLMENGANAENLNYGAIERGDMPKPCRPGTLNCVPEPANKYD 61

Query: 63 RGCEPEEHCRSG 73
          RGC   E CR+G
Sbjct: 62 RGCSRLEKCRNG 73

[Close]
BLAST of Csa5G054060 vs. TAIR10
Match: AT4G11510.1 (AT4G11510.1 ralf-like 28)

HSP 1 Score: 46.6 bits (109), Expect = 8.0e-06
Identity = 26/73 (35.62%), Postives = 34/73 (46.58%), Query Frame = 1 

Query: 7  KTLAIVMVAMIMVCSLMENPTN---ATSLDYGAIGKGDAR--CKDGKCEILGDPANNYTR 66
          +T   ++VAM + C  + N  N   A  + Y  +G+GD +  C  G C     PAN Y R
Sbjct: 6  ETKRFMVVAMFIACVFISNNMNVAVANEIGYPGMGRGDRQPGCDHGNCPP-DQPANPYHR 65

Query: 67 GCEPEEHCRSGSP 75
          GCE  + CR   P
Sbjct: 66 GCEKSKRCRGPDP 77

[Close]
BLAST of Csa5G054060 vs. NCBI nr
Match: gi|700194487|gb|KGN49664.1| (hypothetical protein Csa_5G054060 [Cucumis sativus])

HSP 1 Score: 163.3 bits (412), Expect = 1.7e-37
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1 

Query: 1  MAGNTNKTLAIVMVAMIMVCSLMENPTNATSLDYGAIGKGDARCKDGKCEILGDPANNYT 60
          MAGNTNKTLAIVMVAMIMVCSLMENPTNATSLDYGAIGKGDARCKDGKCEILGDPANNYT
Sbjct: 1  MAGNTNKTLAIVMVAMIMVCSLMENPTNATSLDYGAIGKGDARCKDGKCEILGDPANNYT 60

Query: 61 RGCEPEEHCRSGSPGQ 77
          RGCEPEEHCRSGSPGQ
Sbjct: 61 RGCEPEEHCRSGSPGQ 76

[Close]
BLAST of Csa5G054060 vs. NCBI nr
Match: gi|700193860|gb|KGN49064.1| (hypothetical protein Csa_6G511800 [Cucumis sativus])

HSP 1 Score: 147.9 bits (372), Expect = 7.3e-33
Identity = 67/75 (89.33%), Postives = 70/75 (93.33%), Query Frame = 1 

Query: 1  MAGNTNKTLAIVMVAMIMVCSLMENPTNATSLDYGAIGKGDARCKDGKCEILGDPANNYT 60
          MAGNTNKTL I+M+AMIM CSL+ENPTNATSL YG IGKGDARCKDGKCEILGDPANNYT
Sbjct: 1  MAGNTNKTLVILMIAMIMACSLIENPTNATSLGYGVIGKGDARCKDGKCEILGDPANNYT 60

Query: 61 RGCEPEEHCRSGSPG 76
          RGCEPEEHCRSGS G
Sbjct: 61 RGCEPEEHCRSGSSG 75

[Close]
BLAST of Csa5G054060 vs. NCBI nr
Match: gi|763777655|gb|KJB44778.1| (hypothetical protein B456_007G272100 [Gossypium raimondii])

HSP 1 Score: 60.1 bits (144), Expect = 2.0e-06
Identity = 30/72 (41.67%), Postives = 42/72 (58.33%), Query Frame = 1 

Query: 3  GNTNKTLAIVMVAMIMVCSLMENPTNATSLDYGAIGKGD--ARCKDGKCEILGDPANNYT 62
          G   K + + + AM++   LMEN  NA +L+YGAI +GD    C+ G    + +PAN Y 
Sbjct: 2  GVEKKMMVVWICAMVVSSMLMENGANAENLNYGAIERGDMPKPCRPGTLNCVPEPANKYD 61

Query: 63 RGCEPEEHCRSG 73
          RGC   E CR+G
Sbjct: 62 RGCSRLEKCRNG 73

The following BLAST results are available for this feature:
BLAST of Csa5G054060 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KLD0_CUCSA1.2e-37100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G054060 PE=4 SV=1[more]
A0A0A0KJT5_CUCSA5.1e-3389.33Uncharacterized protein OS=Cucumis sativus GN=Csa_6G511800 PE=4 SV=1[more]
A0A0D2SKN2_GOSRA1.4e-0641.67Uncharacterized protein OS=Gossypium raimondii GN=B456_007G272100 PE=4 SV=1[more]
BLAST of Csa5G054060 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G11510.18.0e-0635.62 ralf-like 28[more]
BLAST of Csa5G054060 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700194487|gb|KGN49664.1|1.7e-37100.00hypothetical protein Csa_5G054060 [Cucumis sativus][more]
gi|700193860|gb|KGN49064.1|7.3e-3389.33hypothetical protein Csa_6G511800 [Cucumis sativus][more]
gi|763777655|gb|KJB44778.1|2.0e-0641.67hypothetical protein B456_007G272100 [Gossypium raimondii][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008801RALF
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa5G054060.1Csa5G054060.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU105647CU105647transcribed_cluster
CU108322CU108322transcribed_cluster
CU121044CU121044transcribed_cluster
CU144115CU144115transcribed_cluster
CU168903CU168903transcribed_cluster
CU098583CU098583transcribed_cluster
CU099392CU099392transcribed_cluster
CU099821CU099821transcribed_cluster
CU099860CU099860transcribed_cluster
CU099868CU099868transcribed_cluster
CU099974CU099974transcribed_cluster
CU105659CU105659transcribed_cluster
CU174384CU174384transcribed_cluster
CU100620CU100620transcribed_cluster
CU100281CU100281transcribed_cluster
CU170379CU170379transcribed_cluster
CU092706CU092706transcribed_cluster
CU155578CU155578transcribed_cluster
CU091571CU091571transcribed_cluster
CU099110CU099110transcribed_cluster
CU170643CU170643transcribed_cluster
CU177059CU177059transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008801Rapid ALkalinization FactorPFAMPF05498RALFcoord: 32..70
score: 2.

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa5G054060Bottle gourd (USVL1VR-Ls)culsiB370
Csa5G054060Cucumber (Gy14) v2cgybcuB225
Csa5G054060Melon (DHL92) v3.6.1cumedB364
Csa5G054060Silver-seed gourdcarcuB0198
Csa5G054060Silver-seed gourdcarcuB0693
Csa5G054060Watermelon (97103) v2cuwmbB397
Csa5G054060Wax gourdcuwgoB507
Csa5G054060Cucurbita maxima (Rimu)cmacuB741
Csa5G054060Cucurbita maxima (Rimu)cmacuB743
Csa5G054060Cucurbita moschata (Rifu)cmocuB731
Csa5G054060Cucurbita moschata (Rifu)cmocuB735
Csa5G054060Melon (DHL92) v3.5.1cumeB383
Csa5G054060Watermelon (Charleston Gray)cuwcgB407
Csa5G054060Watermelon (97103) v1cuwmB389
Csa5G054060Cucurbita pepo (Zucchini)cpecuB428
Csa5G054060Cucurbita pepo (Zucchini)cpecuB435