Csa4G663640.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa4G663640.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr4 : 23032604 .. 23033289 (+)
Sequence length303
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTGGGCTTTGTGGTCAAGAAGGATCATGTAAGTGTTTTTAGGATCAATTAATTCTAATGCAGAAGCTCACAAGGTGGCCTAGACACTCATAGATATATATGTACTGTTAAGTTTGTCATGCGTCCTTGTTGGCCACAGCAAAAACACTTCCCAGAGTGTTGGTTTGGCATAGGAATATTCCTTTGGGATTCTTGAGTTTTCTGTAGGCTTAAATTTGTTTTCTTTTGTTTTGCTAAAAGGATATGTGGAAGTACCACCTATTTCAAATGTTCTTTGGGGTTTCAAAATTTCCTTCTTTGAGATTTATCGTGATACTCCAGCTGGATCATTCTATTGCATTCGGGGTTTTGTGAATCTCTTTCTATTGTGGCTGTCCAATCCACTGATTCCACCTTGGGCTGGGATGGTGTTTTTTGGTGGTTCTTGAATAATTTACAGGTTTGAATTTTGTCTGAAATGTCTTTTTTCTTTATGTGCAGGTATATTAAATCCTTGGGGTCACTTTGAAGGCGTTCTTGTGCTTGTAAGCTACCTTCGTTTCTGTTTTATTGACTCCGAATTGTTCTCTCTGCTTTCTTTCACGATTGTTGATTTTTTTCGTTAGTGTGGATCACTGTCGCTGTCATCAACCGCTCAAATTGAATGCTCTGATTCTAAATTTATGTCATTTAGTATTTGGTAA

mRNA sequence

ATGAGTGGGCTTTGTGGTCAAGAAGGATCATCAAAAACACTTCCCAGAGTGTTGGTTTGGCATAGGAATATTCCTTTGGGATTCTTGAGTTTTCTCTGGATCATTCTATTGCATTCGGGGTTTTGTGAATCTCTTTCTATTGTGGCTGTCCAATCCACTGATTCCACCTTGGGCTGGGATGGTATATTAAATCCTTGGGGTCACTTTGAAGGCGTTCTTGTGCTTTGTGGATCACTGTCGCTGTCATCAACCGCTCAAATTGAATGCTCTGATTCTAAATTTATGTCATTTAGTATTTGGTAA

Coding sequence (CDS)

ATGAGTGGGCTTTGTGGTCAAGAAGGATCATCAAAAACACTTCCCAGAGTGTTGGTTTGGCATAGGAATATTCCTTTGGGATTCTTGAGTTTTCTCTGGATCATTCTATTGCATTCGGGGTTTTGTGAATCTCTTTCTATTGTGGCTGTCCAATCCACTGATTCCACCTTGGGCTGGGATGGTATATTAAATCCTTGGGGTCACTTTGAAGGCGTTCTTGTGCTTTGTGGATCACTGTCGCTGTCATCAACCGCTCAAATTGAATGCTCTGATTCTAAATTTATGTCATTTAGTATTTGGTAA

Protein sequence

MSGLCGQEGSSKTLPRVLVWHRNIPLGFLSFLWIILLHSGFCESLSIVAVQSTDSTLGWDGILNPWGHFEGVLVLCGSLSLSSTAQIECSDSKFMSFSIW*
Homology
[Close]
BLAST of Csa4G663640.1 vs. TrEMBL
Match: A0A0A0L0R3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G663640 PE=4 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 8.3e-52
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 1 

Query: 1   MSGLCGQEGSSKTLPRVLVWHRNIPLGFLSFLWIILLHSGFCESLSIVAVQSTDSTLGWD 60
           MSGLCGQEGSSKTLPRVLVWHRNIPLGFLSFLWIILLHSGFCESLSIVAVQSTDSTLGWD
Sbjct: 1   MSGLCGQEGSSKTLPRVLVWHRNIPLGFLSFLWIILLHSGFCESLSIVAVQSTDSTLGWD 60

Query: 61  GILNPWGHFEGVLVLCGSLSLSSTAQIECSDSKFMSFSIW 101
           GILNPWGHFEGVLVLCGSLSLSSTAQIECSDSKFMSFSIW
Sbjct: 61  GILNPWGHFEGVLVLCGSLSLSSTAQIECSDSKFMSFSIW 100

[Close]
BLAST of Csa4G663640.1 vs. NCBI nr
Match: gi|700200347|gb|KGN55505.1| (hypothetical protein Csa_4G663640 [Cucumis sativus])

HSP 1 Score: 210.7 bits (535), Expect = 1.2e-51
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 1 

Query: 1   MSGLCGQEGSSKTLPRVLVWHRNIPLGFLSFLWIILLHSGFCESLSIVAVQSTDSTLGWD 60
           MSGLCGQEGSSKTLPRVLVWHRNIPLGFLSFLWIILLHSGFCESLSIVAVQSTDSTLGWD
Sbjct: 1   MSGLCGQEGSSKTLPRVLVWHRNIPLGFLSFLWIILLHSGFCESLSIVAVQSTDSTLGWD 60

Query: 61  GILNPWGHFEGVLVLCGSLSLSSTAQIECSDSKFMSFSIW 101
           GILNPWGHFEGVLVLCGSLSLSSTAQIECSDSKFMSFSIW
Sbjct: 61  GILNPWGHFEGVLVLCGSLSLSSTAQIECSDSKFMSFSIW 100

The following BLAST results are available for this feature:
BLAST of Csa4G663640.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L0R3_CUCSA8.3e-52100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G663640 PE=4 SV=1[more]
BLAST of Csa4G663640.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700200347|gb|KGN55505.1|1.2e-51100.00hypothetical protein Csa_4G663640 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa4G663640Csa4G663640gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa4G663640.1Csa4G663640.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa4G663640.1.cds1Csa4G663640.1.cds1CDS
Csa4G663640.1.cds2Csa4G663640.1.cds2CDS
Csa4G663640.1.cds3Csa4G663640.1.cds3CDS
Csa4G663640.1.cds4Csa4G663640.1.cds4CDS
Csa4G663640.1.cds5Csa4G663640.1.cds5CDS