Csa4G650220.1 (mRNA) Cucumber (Chinese Long) v2
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GGAGTTGGAAATGAAATTTGAGGGGGTTGGTTTTGATTAGTGCAGGATGTATTCATGCCAGTTATGGATGGGCTTGAAGCTACAAGGTTGATTCGTTCTTTTGAGGAAACAGGCAGTTGGGAAGCAGCTGTAAATGCTGGAATATTCCACCACCCAACTACTACACCTTCTTGGACTCCTTCCTCTTCCTCTTCCTCATCCTCCCGCAACAGGATGCCCATCATCGCTGTCAGTACCTCTTTTCTTCACTTTCTTTACTTTCCTCCCTTTATTTTATTATTTTATCAATTGCTTTCCTCATTCCTCAACCGAATATAGATTTCATTTTAGTATTAAAACATTAATAAGCCGTTACAAATCAAATAATTTATCTATTCACACGCAACTATCTAACTATGTCTGAACAACAAAAAAACAAACTCTATAACTAACTGATGTTTACCTACCCGTCTTAGGTTAATATTTCAAATGAATTTTTATTATTTCTTTTATGCGTTAGAAAAAGTAATATTAACGTATATTCTATACAATTTTTTTTAAAAAAAAAAAATTGACTAGTAGTTGATTTATATCAAAATTGATTAAATAATAACGAAAATTGATTAAATAATAACGAGTAGTTTCAGGTAGGAAATAAAATGTAATATATTTTCAAGATAAAAATGTTGTAGATAACTAAAACATTAGATAGTAAATTTATTATTTATTGAAAAAAGTTAGCAGTATAGACACTAAAATTTAACAACTCTACACTAGAGGGAGTAAATGTTCCTTCTAAACTACTAATTTAGGACATGTTTAGTAATTCATTCATTTTGTGTGGGAAGGAAAACTAAAATTTGTTAAACCATTTTTGTTACATTTTGAAAAGCATTTTGTTTTTTAAAATTAAGCTTATAAACACGATTATTGTTCTCAATTTTCTTCATTTATTATCTATATTTTGAAGAAAAAAAAACTTATAAACACCCTTGTTTTGAAAACAAGTTAAATTTGAAAATTAAAAACTAGTTTTTGTTTTTGGAATTTGGTTAAGTATTTAACCATTGTATAAATAAAAACAAAAATAAAAAAATTGTGGTTACCAAATCGTTTTTTATTTTTTTATAAATTTTGGATTGTTTTTTAAACTATAGGTAAGAAGTAGATAACAAAATATTAAAGTTGGAGATAGAATTATTGTCTATAGGCTTCTCAAAAACAAAAACCAAATGAATAAATTCACAAAATAAAATTTGAAAACATTGGTAGCAAGTAAATATTAAAGCAAAAAATTTAAAGATAGAAAAGATGTTTATAAAGTTAACTTTAAAAAGTATTAGTAAAAGACTTTCATAGATACGGTTATATTTTAAAATTGTTGTTATATCTGCAACTACCTGAAAATGTTAACAAACGAAAACGATACTAAATTTATCAGAAACAACTTATAAATCTAAACCAAACTTCAGAAACAACTTTTCAAATTTTACCTTTGCAAATCTAAACTATGATTTATAGAATTAACAATAAGAAAACCGGTTAAGAAATAAGGAAGTGGTTGAACATAATATGAAGTAAATTGGGTGCAATTTAATTACACAAATTGAGTGGAAAAAGAAGGAAGTAAAGAAATGTGGGGGTTTACGTACCTTGCAGATGACGGCGAATTCAATGTCAGAAAGCGCAGAAGAGTGTTATGAAAACGGGATGGACTCATTCGTATCAAAGCCAATCACCTTCCAGAAGTTGAAAGAATGTCTTGAACGATATTTACCACAACCACCTTTGTAAATTGTGTAATGCTTTTGTTTGAGAGAAGGTAAATGGGTAGAAGAAGAAGATGAAGAAGAATCAGAGTTCAGTAGGAAAGTTTTGTAATCGTCCTTTTACCTCTTTTTTTTTTGTGGGTAAAGTAATGTAATCAGTGTAACATATGTTCTCTTACTCAATTTGTAAATTGTACAGAAGAAGAAAGCTGTTGTTCTTTCTCAGAGCAAATTTGTAATAAAGTTTTCACATTTTGCTTTTGTGAGACTTATACCTAAACCAATGCCACACAGCTTTCTTTCTTTTTGTTCCCTTCATAATAATAATTGGTGGCCGATCGAGCTACCTTATGACCCTAACATCTCAATCAATCTAAATCTAATA ATGCCAGTTATGGATGGGCTTGAAGCTACAAGGTTGATTCGTTCTTTTGAGGAAACAGGCAGTTGGGAAGCAGCTGTAAATGCTGGAATATTCCACCACCCAACTACTACACCTTCTTGGACTCCTTCCTCTTCCTCTTCCTCATCCTCCCGCAACAGGATGCCCATCATCGCTATGACGGCGAATTCAATGTCAGAAAGCGCAGAAGAGTGTTATGAAAACGGGATGGACTCATTCGTATCAAAGCCAATCACCTTCCAGAAGTTGAAAGAATGTCTTGAACGATATTTACCACAACCACCTTTGTAA ATGCCAGTTATGGATGGGCTTGAAGCTACAAGGTTGATTCGTTCTTTTGAGGAAACAGGCAGTTGGGAAGCAGCTGTAAATGCTGGAATATTCCACCACCCAACTACTACACCTTCTTGGACTCCTTCCTCTTCCTCTTCCTCATCCTCCCGCAACAGGATGCCCATCATCGCTATGACGGCGAATTCAATGTCAGAAAGCGCAGAAGAGTGTTATGAAAACGGGATGGACTCATTCGTATCAAAGCCAATCACCTTCCAGAAGTTGAAAGAATGTCTTGAACGATATTTACCACAACCACCTTTGTAA MPVMDGLEATRLIRSFEETGSWEAAVNAGIFHHPTTTPSWTPSSSSSSSSRNRMPIIAMTANSMSESAEECYENGMDSFVSKPITFQKLKECLERYLPQPPL*
BLAST of Csa4G650220.1 vs. Swiss-Prot
Match: AHK5_ARATH (Histidine kinase 5 OS=Arabidopsis thaliana GN=AHK5 PE=1 SV=1) HSP 1 Score: 120.2 bits (300), Expect = 1.4e-26 Identity = 57/97 (58.76%), Postives = 73/97 (75.26%), Query Frame = 1
BLAST of Csa4G650220.1 vs. Swiss-Prot
Match: OHK1_ORYSI (Probable histidine kinase 1 OS=Oryza sativa subsp. indica GN=HK1 PE=3 SV=1) HSP 1 Score: 102.4 bits (254), Expect = 2.9e-21 Identity = 53/99 (53.54%), Postives = 65/99 (65.66%), Query Frame = 1
BLAST of Csa4G650220.1 vs. Swiss-Prot
Match: OHK1_ORYSJ (Probable histidine kinase 1 OS=Oryza sativa subsp. japonica GN=HK1 PE=2 SV=1) HSP 1 Score: 102.4 bits (254), Expect = 2.9e-21 Identity = 53/99 (53.54%), Postives = 65/99 (65.66%), Query Frame = 1
BLAST of Csa4G650220.1 vs. Swiss-Prot
Match: DHKA_DICDI (Hybrid signal transduction histidine kinase A OS=Dictyostelium discoideum GN=dhkA PE=1 SV=1) HSP 1 Score: 58.2 bits (139), Expect = 6.3e-08 Identity = 31/96 (32.29%), Postives = 46/96 (47.92%), Query Frame = 1
BLAST of Csa4G650220.1 vs. Swiss-Prot
Match: OHK4_ORYSJ (Probable histidine kinase 4 OS=Oryza sativa subsp. japonica GN=HK4 PE=2 SV=1) HSP 1 Score: 57.8 bits (138), Expect = 8.3e-08 Identity = 33/97 (34.02%), Postives = 54/97 (55.67%), Query Frame = 1
BLAST of Csa4G650220.1 vs. TrEMBL
Match: A0A0A0L0Z1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G650220 PE=4 SV=1) HSP 1 Score: 210.7 bits (535), Expect = 8.5e-52 Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 1
BLAST of Csa4G650220.1 vs. TrEMBL
Match: B9ILD1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s03320g PE=4 SV=2) HSP 1 Score: 132.1 bits (331), Expect = 3.8e-28 Identity = 68/98 (69.39%), Postives = 79/98 (80.61%), Query Frame = 1
BLAST of Csa4G650220.1 vs. TrEMBL
Match: W9RFB6_9ROSA (Histidine kinase 5 OS=Morus notabilis GN=L484_018640 PE=4 SV=1) HSP 1 Score: 132.1 bits (331), Expect = 3.8e-28 Identity = 67/99 (67.68%), Postives = 81/99 (81.82%), Query Frame = 1
BLAST of Csa4G650220.1 vs. TrEMBL
Match: A0A022Q6B1_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a018340mg PE=4 SV=1) HSP 1 Score: 131.7 bits (330), Expect = 5.0e-28 Identity = 67/98 (68.37%), Postives = 79/98 (80.61%), Query Frame = 1
BLAST of Csa4G650220.1 vs. TrEMBL
Match: A0A067FV71_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g039716mg PE=4 SV=1) HSP 1 Score: 131.0 bits (328), Expect = 8.6e-28 Identity = 66/98 (67.35%), Postives = 77/98 (78.57%), Query Frame = 1
BLAST of Csa4G650220.1 vs. TAIR10
Match: AT5G10720.1 (AT5G10720.1 histidine kinase 5) HSP 1 Score: 120.2 bits (300), Expect = 7.7e-28 Identity = 57/97 (58.76%), Postives = 73/97 (75.26%), Query Frame = 1
BLAST of Csa4G650220.1 vs. TAIR10
Match: AT1G27320.1 (AT1G27320.1 histidine kinase 3) HSP 1 Score: 56.2 bits (134), Expect = 1.4e-08 Identity = 33/100 (33.00%), Postives = 45/100 (45.00%), Query Frame = 1
BLAST of Csa4G650220.1 vs. TAIR10
Match: AT2G01830.2 (AT2G01830.2 CHASE domain containing histidine kinase protein) HSP 1 Score: 50.1 bits (118), Expect = 9.7e-07 Identity = 34/101 (33.66%), Postives = 45/101 (44.55%), Query Frame = 1
BLAST of Csa4G650220.1 vs. TAIR10
Match: AT5G35750.1 (AT5G35750.1 histidine kinase 2) HSP 1 Score: 50.1 bits (118), Expect = 9.7e-07 Identity = 35/99 (35.35%), Postives = 48/99 (48.48%), Query Frame = 1
BLAST of Csa4G650220.1 vs. NCBI nr
Match: gi|778696817|ref|XP_011654212.1| (PREDICTED: histidine kinase 5 isoform X1 [Cucumis sativus]) HSP 1 Score: 210.7 bits (535), Expect = 1.2e-51 Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 1
BLAST of Csa4G650220.1 vs. NCBI nr
Match: gi|700200245|gb|KGN55403.1| (hypothetical protein Csa_4G650220 [Cucumis sativus]) HSP 1 Score: 210.7 bits (535), Expect = 1.2e-51 Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 1
BLAST of Csa4G650220.1 vs. NCBI nr
Match: gi|659104114|ref|XP_008452811.1| (PREDICTED: histidine kinase 5 [Cucumis melo]) HSP 1 Score: 184.5 bits (467), Expect = 9.4e-44 Identity = 93/102 (91.18%), Postives = 94/102 (92.16%), Query Frame = 1
BLAST of Csa4G650220.1 vs. NCBI nr
Match: gi|698440152|ref|XP_009759695.1| (PREDICTED: histidine kinase 5 [Nicotiana sylvestris]) HSP 1 Score: 136.0 bits (341), Expect = 3.8e-29 Identity = 68/98 (69.39%), Postives = 81/98 (82.65%), Query Frame = 1
BLAST of Csa4G650220.1 vs. NCBI nr
Match: gi|1000974238|ref|XP_015572456.1| (PREDICTED: histidine kinase 5 [Ricinus communis]) HSP 1 Score: 134.4 bits (337), Expect = 1.1e-28 Identity = 68/98 (69.39%), Postives = 76/98 (77.55%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
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