Csa4G642560 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa4G642560
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr4 : 21606839 .. 21607183 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATGTATGTTTTTATTGCTCAGTTGGTGGGTTGAGTGAGAAGTTTGAATTTTGTGTGGTGAAGCAATGGAAAATGGCGAATGGTCGTTATCTGTTGGAATGTGGTTGTTATGTGTTTGCCTTCTTTACTTGTCAATATCTTTACGTTCATAATGTTTTCAACACATGCATGTACTGCCTCGTCTTTCAGTCTCTCACCTGCCCCTTCGGCTCAATTAAGAATACATCACCATCGTTTTCCAACCTTTATTTTATGGTTTATATCGTTTCTTCTTCATCTAGTCCATTATCTTGGCTTCTCTTCTTGAGAGTATTTCTTGGTTTATGCTATTTCTACAATTAG

mRNA sequence

ATGAATGTATGTTTTTATTGCTCAGTTGGTGGGTTGAGTGAGAAGTTTGAATTTTGTGTGGTGAAGCAATGGAAAATGGCGAATGGTCGTTATCTGTTGGAATGTGGTTGTTATGTGTTTGCCTTCTTTACTTGTCAATATCTTTACGTTCATAATGTTTTCAACACATGCATGTACTGCCTCGTCTTTCAGTCTCTCACCTGCCCCTTCGGCTCAATTAAGAATACATCACCATCGTTTTCCAACCTTTATTTTATGGTTTATATCGTTTCTTCTTCATCTAGTCCATTATCTTGGCTTCTCTTCTTGAGAGTATTTCTTGGTTTATGCTATTTCTACAATTAG

Coding sequence (CDS)

ATGAATGTATGTTTTTATTGCTCAGTTGGTGGGTTGAGTGAGAAGTTTGAATTTTGTGTGGTGAAGCAATGGAAAATGGCGAATGGTCGTTATCTGTTGGAATGTGGTTGTTATGTGTTTGCCTTCTTTACTTGTCAATATCTTTACGTTCATAATGTTTTCAACACATGCATGTACTGCCTCGTCTTTCAGTCTCTCACCTGCCCCTTCGGCTCAATTAAGAATACATCACCATCGTTTTCCAACCTTTATTTTATGGTTTATATCGTTTCTTCTTCATCTAGTCCATTATCTTGGCTTCTCTTCTTGAGAGTATTTCTTGGTTTATGCTATTTCTACAATTAG

Protein sequence

MNVCFYCSVGGLSEKFEFCVVKQWKMANGRYLLECGCYVFAFFTCQYLYVHNVFNTCMYCLVFQSLTCPFGSIKNTSPSFSNLYFMVYIVSSSSSPLSWLLFLRVFLGLCYFYN*
Homology
[Close]
BLAST of Csa4G642560 vs. TrEMBL
Match: A0A0A0KZY2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G642560 PE=4 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 1.4e-63
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 1 

Query: 1   MNVCFYCSVGGLSEKFEFCVVKQWKMANGRYLLECGCYVFAFFTCQYLYVHNVFNTCMYC 60
           MNVCFYCSVGGLSEKFEFCVVKQWKMANGRYLLECGCYVFAFFTCQYLYVHNVFNTCMYC
Sbjct: 1   MNVCFYCSVGGLSEKFEFCVVKQWKMANGRYLLECGCYVFAFFTCQYLYVHNVFNTCMYC 60

Query: 61  LVFQSLTCPFGSIKNTSPSFSNLYFMVYIVSSSSSPLSWLLFLRVFLGLCYFYN 115
           LVFQSLTCPFGSIKNTSPSFSNLYFMVYIVSSSSSPLSWLLFLRVFLGLCYFYN
Sbjct: 61  LVFQSLTCPFGSIKNTSPSFSNLYFMVYIVSSSSSPLSWLLFLRVFLGLCYFYN 114

[Close]
BLAST of Csa4G642560 vs. NCBI nr
Match: gi|700200117|gb|KGN55275.1| (hypothetical protein Csa_4G642560 [Cucumis sativus])

HSP 1 Score: 250.0 bits (637), Expect = 2.0e-63
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 1 

Query: 1   MNVCFYCSVGGLSEKFEFCVVKQWKMANGRYLLECGCYVFAFFTCQYLYVHNVFNTCMYC 60
           MNVCFYCSVGGLSEKFEFCVVKQWKMANGRYLLECGCYVFAFFTCQYLYVHNVFNTCMYC
Sbjct: 1   MNVCFYCSVGGLSEKFEFCVVKQWKMANGRYLLECGCYVFAFFTCQYLYVHNVFNTCMYC 60

Query: 61  LVFQSLTCPFGSIKNTSPSFSNLYFMVYIVSSSSSPLSWLLFLRVFLGLCYFYN 115
           LVFQSLTCPFGSIKNTSPSFSNLYFMVYIVSSSSSPLSWLLFLRVFLGLCYFYN
Sbjct: 61  LVFQSLTCPFGSIKNTSPSFSNLYFMVYIVSSSSSPLSWLLFLRVFLGLCYFYN 114

The following BLAST results are available for this feature:
BLAST of Csa4G642560 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KZY2_CUCSA1.4e-63100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G642560 PE=4 SV=1[more]
BLAST of Csa4G642560 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700200117|gb|KGN55275.1|2.0e-63100.00hypothetical protein Csa_4G642560 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa4G642560.1Csa4G642560.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa4G642560Melon (DHL92) v3.6.1cumedB275
Csa4G642560Melon (DHL92) v3.6.1cumedB298
Csa4G642560Melon (DHL92) v3.6.1cumedB295
Csa4G642560Melon (DHL92) v3.6.1cumedB315
Csa4G642560Silver-seed gourdcarcuB0002
Csa4G642560Silver-seed gourdcarcuB0204
Csa4G642560Silver-seed gourdcarcuB0347
Csa4G642560Silver-seed gourdcarcuB0407
Csa4G642560Silver-seed gourdcarcuB0440
Csa4G642560Silver-seed gourdcarcuB0486
Csa4G642560Silver-seed gourdcarcuB0789
Csa4G642560Watermelon (97103) v2cuwmbB265
Csa4G642560Watermelon (97103) v2cuwmbB278
Csa4G642560Watermelon (97103) v2cuwmbB305
Csa4G642560Watermelon (97103) v2cuwmbB326
Csa4G642560Wax gourdcuwgoB385
Csa4G642560Wax gourdcuwgoB395
Csa4G642560Wax gourdcuwgoB419
Csa4G642560Cucumber (Chinese Long) v2cucuB062
Csa4G642560Cucumber (Chinese Long) v2cucuB135
Csa4G642560Cucumber (Chinese Long) v2cucuB143
Csa4G642560Cucumber (Chinese Long) v2cucuB153
Csa4G642560Cucumber (Gy14) v1cgycuB120
Csa4G642560Cucumber (Gy14) v1cgycuB321
Csa4G642560Cucumber (Gy14) v1cgycuB494
Csa4G642560Cucumber (Gy14) v1cgycuB550
Csa4G642560Cucurbita maxima (Rimu)cmacuB020
Csa4G642560Cucurbita maxima (Rimu)cmacuB185
Csa4G642560Cucurbita maxima (Rimu)cmacuB473
Csa4G642560Cucurbita maxima (Rimu)cmacuB671
Csa4G642560Cucurbita maxima (Rimu)cmacuB721
Csa4G642560Cucurbita maxima (Rimu)cmacuB801
Csa4G642560Cucurbita maxima (Rimu)cmacuB869
Csa4G642560Cucurbita moschata (Rifu)cmocuB011
Csa4G642560Cucurbita moschata (Rifu)cmocuB169
Csa4G642560Cucurbita moschata (Rifu)cmocuB328
Csa4G642560Cucurbita moschata (Rifu)cmocuB461
Csa4G642560Cucurbita moschata (Rifu)cmocuB661
Csa4G642560Cucurbita moschata (Rifu)cmocuB713
Csa4G642560Cucurbita moschata (Rifu)cmocuB792
Csa4G642560Cucurbita moschata (Rifu)cmocuB856
Csa4G642560Melon (DHL92) v3.5.1cumeB290
Csa4G642560Melon (DHL92) v3.5.1cumeB309
Csa4G642560Melon (DHL92) v3.5.1cumeB313
Csa4G642560Melon (DHL92) v3.5.1cumeB327
Csa4G642560Watermelon (Charleston Gray)cuwcgB285
Csa4G642560Watermelon (Charleston Gray)cuwcgB310
Csa4G642560Watermelon (Charleston Gray)cuwcgB332
Csa4G642560Watermelon (97103) v1cuwmB298
Csa4G642560Watermelon (97103) v1cuwmB319
Csa4G642560Watermelon (97103) v1cuwmB328
Csa4G642560Cucurbita pepo (Zucchini)cpecuB116
Csa4G642560Cucurbita pepo (Zucchini)cpecuB491
Csa4G642560Cucurbita pepo (Zucchini)cpecuB564
Csa4G642560Cucurbita pepo (Zucchini)cpecuB782
Csa4G642560Cucurbita pepo (Zucchini)cpecuB831
Csa4G642560Bottle gourd (USVL1VR-Ls)culsiB262
Csa4G642560Bottle gourd (USVL1VR-Ls)culsiB279
Csa4G642560Bottle gourd (USVL1VR-Ls)culsiB291
Csa4G642560Bottle gourd (USVL1VR-Ls)culsiB317
Csa4G642560Cucumber (Gy14) v2cgybcuB073
Csa4G642560Cucumber (Gy14) v2cgybcuB166
Csa4G642560Cucumber (Gy14) v2cgybcuB177
Csa4G642560Cucumber (Gy14) v2cgybcuB269
Csa4G642560Cucumber (Gy14) v2cgybcuB316