Csa4G260440 (gene) Cucumber (Chinese Long) v2
The following sequences are available for this feature:
Legend: CDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGAAAGTGATTAGAGGGCTTAATAAGAGTACTGGGGTTGTGCTAGAATATTTGCAAGAAGCAAAGGTAATTATGGGAAAAATTATAGTTGTAGTGGGATATGGGGATAGTGTTCCTTATTTAAGATTGTGATTTATGATTGTTTAGGAGCATGGACATAGAAAAGGAAAAGACATTTTAGCATCTATACCGGGTTATTGGGAGGTAATATGTTCTATATTTGAAGGTGAAGATGAACATATGTTTATCAGCGCCCAATTATTACCTGCGATTCGGTATTTTATTGTACAAATATAAAATGCCTAAATTCCATTTCTATATTTACAAATGAACGTCCTTTCAATAATTCACTCCTTTCTTTGCAATTTTAGAAGAATCAGATAAGGAAGTTAAATGATTCAACATCCAAGTAAAAGCATATGAAGATAATTCAAATTTGAACATGTCTGTACAACTTATATGCTCAAAGAAACGAGTAATAAATGTGGGAAAGTTCCAATTCTTTCAGCAGATCCATTTCATAGAACTCTTAGTTCATTGTTTTTCCTTTTTTTTTTTTAATCTTTACCTATTATTTTATTTGGTTTAATGTGGTTGAGTGATACCACTTTTTAATTGACAAAACATTTTCATTTCATATTTCTTTCAAGTGGGAATCTCAACATCAGATTTCTTCTTTCTTCTTTGAAGTGGAAATTTCTTTGGTAGAAATTACTTTAGCCCATTTCACAATTTGAGTATATTCATACTAAAAGAACATCATTCCATGTGACTTTTACTCTTTTCAGTGTTTACTAGATGGTTTGGTTCTCTTTTGATTGTGGACTTTTCCTATTTTATGCAATCCTTATTGTTCCCGTGTTTCAGATAGCATGGACTTTCTTCTCCATATGATACATGTTTTATATACTTCAAAGAATTTCAGGTTCTCTCTCTCTTAGTGTGTGGGTGTGAGTTTACCTTTTTAGGGGTGTTCTAGTGGTTCTTGAGCCTAAATACATGTTGAAGTGCTATGACTATCCTGCAGCCAATGTAGTCTTTTTTTTAATTTTATTTTATGTGTGCTTAAATGATCATTTCTTCCTAAACGTATTTTGATAAGGAACATATTTATGCATGTTAGAAGAAGAAATGCGCTAAAACGTATTTAGGAAACACATTTCTTCCTAAATGTGCTTAAATGATCATTTCTTCCTAAACGTGTTTTGATAAGGAACATATTTTAGTATGTTAGAAGAAGAAACGTGCTTAAACATGTTTAGGAAACATTTTTTGTGTACTTATTAGACAACTTTAGCAATTGAGTTTAATTTTTTCTAGGCAATTGAATGATATTCCTTCTGAACTCGAGAAACTGGATAAGTTGTTTGAATTGTGAGTTACATGTTGTCTACAATATATTTTTCAAACTTTTGATGCAAATATTTCTTTGCTATGATCCATAAATCTTGCTAATAATTATCTTAAATGACCTATCCCTCACAACACATCCGTCTTACACTGCATCAAATTAATTGTAAGATATCCTACGGCCTTCTGTTGAAATTTCATAGGT ATGAAAGTGATTAGAGGGCTTAATAAGAGTACTGGGGTTGTGCTAGAATATTTGCAAGAAGCAAAGGAGCATGGACATAGAAAAGGAAAAGACATTTTAGCATCTATACCGGGTTATTGGGAGGTAATATGTTCTATATTTGAAGGTGAAGATGAACATATGTTTATCAGCGCCCAATTATTACCTGCGATTCGGCAATTGAATGATATTCCTTCTGAACTCGAGAAACTGGATAAGTTGTTTGAATTGTGA ATGAAAGTGATTAGAGGGCTTAATAAGAGTACTGGGGTTGTGCTAGAATATTTGCAAGAAGCAAAGGAGCATGGACATAGAAAAGGAAAAGACATTTTAGCATCTATACCGGGTTATTGGGAGGTAATATGTTCTATATTTGAAGGTGAAGATGAACATATGTTTATCAGCGCCCAATTATTACCTGCGATTCGGCAATTGAATGATATTCCTTCTGAACTCGAGAAACTGGATAAGTTGTTTGAATTGTGA MKVIRGLNKSTGVVLEYLQEAKEHGHRKGKDILASIPGYWEVICSIFEGEDEHMFISAQLLPAIRQLNDIPSELEKLDKLFEL*
BLAST of Csa4G260440 vs. TrEMBL
Match: A0A0A0L0A7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G260440 PE=4 SV=1) HSP 1 Score: 169.1 bits (427), Expect = 2.3e-39 Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 1
BLAST of Csa4G260440 vs. TrEMBL
Match: A0A0A0L170_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G652750 PE=4 SV=1) HSP 1 Score: 64.3 bits (155), Expect = 8.0e-08 Identity = 30/36 (83.33%), Postives = 34/36 (94.44%), Query Frame = 1
BLAST of Csa4G260440 vs. TrEMBL
Match: A0A0A0KLC1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G049520 PE=4 SV=1) HSP 1 Score: 63.9 bits (154), Expect = 1.0e-07 Identity = 38/83 (45.78%), Postives = 49/83 (59.04%), Query Frame = 1
BLAST of Csa4G260440 vs. TrEMBL
Match: M5XWV9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa004130mg PE=4 SV=1) HSP 1 Score: 60.1 bits (144), Expect = 1.5e-06 Identity = 27/36 (75.00%), Postives = 33/36 (91.67%), Query Frame = 1
BLAST of Csa4G260440 vs. TrEMBL
Match: A0A067KMM9_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07121 PE=4 SV=1) HSP 1 Score: 58.5 bits (140), Expect = 4.4e-06 Identity = 25/36 (69.44%), Postives = 32/36 (88.89%), Query Frame = 1
BLAST of Csa4G260440 vs. TAIR10
Match: AT4G32050.1 (AT4G32050.1 neurochondrin family protein) HSP 1 Score: 47.8 bits (112), Expect = 3.9e-06 Identity = 21/35 (60.00%), Postives = 27/35 (77.14%), Query Frame = 1
BLAST of Csa4G260440 vs. NCBI nr
Match: gi|700198849|gb|KGN54007.1| (hypothetical protein Csa_4G260440 [Cucumis sativus]) HSP 1 Score: 169.1 bits (427), Expect = 3.3e-39 Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 1
BLAST of Csa4G260440 vs. NCBI nr
Match: gi|659104302|ref|XP_008452892.1| (PREDICTED: neurochondrin isoform X1 [Cucumis melo]) HSP 1 Score: 64.3 bits (155), Expect = 1.2e-07 Identity = 30/36 (83.33%), Postives = 34/36 (94.44%), Query Frame = 1
BLAST of Csa4G260440 vs. NCBI nr
Match: gi|449455559|ref|XP_004145520.1| (PREDICTED: uncharacterized protein LOC101217523 isoform X2 [Cucumis sativus]) HSP 1 Score: 64.3 bits (155), Expect = 1.2e-07 Identity = 30/36 (83.33%), Postives = 34/36 (94.44%), Query Frame = 1
BLAST of Csa4G260440 vs. NCBI nr
Match: gi|700200305|gb|KGN55463.1| (hypothetical protein Csa_4G652750 [Cucumis sativus]) HSP 1 Score: 64.3 bits (155), Expect = 1.2e-07 Identity = 30/36 (83.33%), Postives = 34/36 (94.44%), Query Frame = 1
BLAST of Csa4G260440 vs. NCBI nr
Match: gi|659104306|ref|XP_008452894.1| (PREDICTED: neurochondrin isoform X2 [Cucumis melo]) HSP 1 Score: 64.3 bits (155), Expect = 1.2e-07 Identity = 30/36 (83.33%), Postives = 34/36 (94.44%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: None |