Csa4G182280 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa4G182280
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr4 : 9078671 .. 9079153 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAATCACTCAAACCTCCATAATTTTCTTCATACGTATGGCTTCTTTCAACTGCTTCATTCTCACCTTCATGGTTACTTGCGTATTTTCAAGCGTGGATGCTGCTCGAACTTCTCGACATCTTCTGCAGACCATTCTAAATTTGCCACCAATGCCATCACTACCTAAGCCATCTGCACTACCGCCTCTACCACCAATGCCGACCGGTCCGAGTATTCCATCCATCCCAAACTTCCCACAACCTTCCCTCCCTAAGCTTACACTTCCTCCACTTCCAAGCCTCCCCATGAATATCCCAACCAAAGTACCGTTGCCTCCTCTCCCCACAACTTCGCTTCCAAACTTGCCATTCCTCTCATCAATCTCGACTACACTTCCGTCGTCGCTCCCATTCTTCTCTCCTCCACCTGCAACTTCTTCTCCTTGAGTTCCGTACAGAATAGCTGTTTTTGTGACGCTTGATTGTTTTCATGTATGTAACTGAT

mRNA sequence

ATGGCTTCTTTCAACTGCTTCATTCTCACCTTCATGGTTACTTGCGTATTTTCAAGCGTGGATGCTGCTCGAACTTCTCGACATCTTCTGCAGACCATTCTAAATTTGCCACCAATGCCATCACTACCTAAGCCATCTGCACTACCGCCTCTACCACCAATGCCGACCGGTCCGAGTATTCCATCCATCCCAAACTTCCCACAACCTTCCCTCCCTAAGCTTACACTTCCTCCACTTCCAAGCCTCCCCATGAATATCCCAACCAAAGTACCGTTGCCTCCTCTCCCCACAACTTCGCTTCCAAACTTGCCATTCCTCTCATCAATCTCGACTACACTTCCGTCGTCGCTCCCATTCTTCTCTCCTCCACCTGCAACTTCTTCTCCTTGA

Coding sequence (CDS)

ATGGCTTCTTTCAACTGCTTCATTCTCACCTTCATGGTTACTTGCGTATTTTCAAGCGTGGATGCTGCTCGAACTTCTCGACATCTTCTGCAGACCATTCTAAATTTGCCACCAATGCCATCACTACCTAAGCCATCTGCACTACCGCCTCTACCACCAATGCCGACCGGTCCGAGTATTCCATCCATCCCAAACTTCCCACAACCTTCCCTCCCTAAGCTTACACTTCCTCCACTTCCAAGCCTCCCCATGAATATCCCAACCAAAGTACCGTTGCCTCCTCTCCCCACAACTTCGCTTCCAAACTTGCCATTCCTCTCATCAATCTCGACTACACTTCCGTCGTCGCTCCCATTCTTCTCTCCTCCACCTGCAACTTCTTCTCCTTGA

Protein sequence

MASFNCFILTFMVTCVFSSVDAARTSRHLLQTILNLPPMPSLPKPSALPPLPPMPTGPSIPSIPNFPQPSLPKLTLPPLPSLPMNIPTKVPLPPLPTTSLPNLPFLSSISTTLPSSLPFFSPPPATSSP*
Homology
[Close]
BLAST of Csa4G182280 vs. Swiss-Prot
Match: RBM12_MOUSE (RNA-binding protein 12 OS=Mus musculus GN=Rbm12 PE=1 SV=3)

HSP 1 Score: 62.0 bits (149), Expect = 5.5e-09
Identity = 39/94 (41.49%), Postives = 51/94 (54.26%), Query Frame = 1 

Query: 38  PMPSLPKPSALPPLPPMPTGPSIPSIPNFPQPSLPKLTLPPLPSLPMNIPTKVPLPPLPT 97
           PM ++P P  +PP+P MP+ P +PSIP  P P  P  TLPP+P +P       P+PP+P 
Sbjct: 181 PMNTVPPPP-IPPIPAMPSLPPLPSIPPIPVPP-PVPTLPPVPPVP-------PIPPVP- 240

Query: 98  TSLPNLPFLSSISTTLP--SSLPFFSPPPATSSP 130
            S+P +       TTLP  S +P  +PPP    P
Sbjct: 241 -SVPPM-------TTLPPMSGMPPLNPPPVAPLP 256

[Close]
BLAST of Csa4G182280 vs. Swiss-Prot
Match: WNK2_HUMAN (Serine/threonine-protein kinase WNK2 OS=Homo sapiens GN=WNK2 PE=1 SV=4)

HSP 1 Score: 60.5 bits (145), Expect = 1.6e-08
Identity = 40/110 (36.36%), Postives = 52/110 (47.27%), Query Frame = 1 

Query: 21   DAARTSRHLLQTILNLPPMPSLPKPSALPP---LPPMPTGPSIPSIPNFPQPSL-PKLTL 80
            D   +  H +Q +   PP P+LP    LPP   LPP PT P  P +P  PQP+  P+  L
Sbjct: 923  DVPPSPHHTVQNMRATPPQPALPPQPTLPPQPVLPPQPTLPPQPVLP--PQPTRPPQPVL 982

Query: 81   PPLPSLPMN--IPTKVPLPPLPTTSLPNLPFLSSISTTLPSSLPFFSPPP 125
            PP P LP    +P +  LP  P    P+LP  ++ + T  S +    P P
Sbjct: 983  PPQPMLPPQPVLPPQPALPVRPEPLQPHLPEQAAPAATPGSQILLGHPAP 1030

[Close]
BLAST of Csa4G182280 vs. Swiss-Prot
Match: RBM12_PONAB (RNA-binding protein 12 OS=Pongo abelii GN=RBM12 PE=2 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.6e-08
Identity = 38/94 (40.43%), Postives = 50/94 (53.19%), Query Frame = 1 

Query: 38  PMPSLPKPSALPPLPPMPTGPSIPSIPNFPQPSLPKLTLPPLPSLPMNIPTKVPLPPLPT 97
           PM ++P P  +PP+P MP+ P +PSIP  P P  P  TLPP+P +P       P+PP+P 
Sbjct: 181 PMNTVPPPP-IPPIPAMPSLPPMPSIPPIPVPP-PVPTLPPVPPVP-------PIPPVP- 240

Query: 98  TSLPNLPFLSSISTTLP--SSLPFFSPPPATSSP 130
            S+P +       T LP  S +P  +PPP    P
Sbjct: 241 -SVPPM-------TPLPPMSGMPPLNPPPVAPLP 256

[Close]
BLAST of Csa4G182280 vs. Swiss-Prot
Match: RBM12_MACMU (RNA-binding protein 12 OS=Macaca mulatta GN=RBM12 PE=2 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.6e-08
Identity = 38/94 (40.43%), Postives = 50/94 (53.19%), Query Frame = 1 

Query: 38  PMPSLPKPSALPPLPPMPTGPSIPSIPNFPQPSLPKLTLPPLPSLPMNIPTKVPLPPLPT 97
           PM ++P P  +PP+P MP+ P +PSIP  P P  P  TLPP+P +P       P+PP+P 
Sbjct: 181 PMNTVPPPP-IPPIPAMPSLPPMPSIPPIPVPP-PVPTLPPVPPVP-------PIPPVP- 240

Query: 98  TSLPNLPFLSSISTTLP--SSLPFFSPPPATSSP 130
            S+P +       T LP  S +P  +PPP    P
Sbjct: 241 -SVPPM-------TPLPPMSGMPPLNPPPVAPLP 256

[Close]
BLAST of Csa4G182280 vs. Swiss-Prot
Match: RBM12_HUMAN (RNA-binding protein 12 OS=Homo sapiens GN=RBM12 PE=1 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.6e-08
Identity = 38/94 (40.43%), Postives = 50/94 (53.19%), Query Frame = 1 

Query: 38  PMPSLPKPSALPPLPPMPTGPSIPSIPNFPQPSLPKLTLPPLPSLPMNIPTKVPLPPLPT 97
           PM ++P P  +PP+P MP+ P +PSIP  P P  P  TLPP+P +P       P+PP+P 
Sbjct: 181 PMNTVPPPP-IPPIPAMPSLPPMPSIPPIPVPP-PVPTLPPVPPVP-------PIPPVP- 240

Query: 98  TSLPNLPFLSSISTTLP--SSLPFFSPPPATSSP 130
            S+P +       T LP  S +P  +PPP    P
Sbjct: 241 -SVPPM-------TPLPPMSGMPPLNPPPVAPLP 256

[Close]
BLAST of Csa4G182280 vs. TrEMBL
Match: A0A0A0KZV3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G182280 PE=4 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 7.4e-69
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 1 

Query: 1   MASFNCFILTFMVTCVFSSVDAARTSRHLLQTILNLPPMPSLPKPSALPPLPPMPTGPSI 60
           MASFNCFILTFMVTCVFSSVDAARTSRHLLQTILNLPPMPSLPKPSALPPLPPMPTGPSI
Sbjct: 1   MASFNCFILTFMVTCVFSSVDAARTSRHLLQTILNLPPMPSLPKPSALPPLPPMPTGPSI 60

Query: 61  PSIPNFPQPSLPKLTLPPLPSLPMNIPTKVPLPPLPTTSLPNLPFLSSISTTLPSSLPFF 120
           PSIPNFPQPSLPKLTLPPLPSLPMNIPTKVPLPPLPTTSLPNLPFLSSISTTLPSSLPFF
Sbjct: 61  PSIPNFPQPSLPKLTLPPLPSLPMNIPTKVPLPPLPTTSLPNLPFLSSISTTLPSSLPFF 120

Query: 121 SPPPATSSP 130
           SPPPATSSP
Sbjct: 121 SPPPATSSP 129

[Close]
BLAST of Csa4G182280 vs. TrEMBL
Match: A0A0A0KWI7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G182290 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 3.7e-28
Identity = 72/127 (56.69%), Postives = 88/127 (69.29%), Query Frame = 1 

Query: 9   LTFMVTCVFSSVDAARTSRHLLQTIL-NLPPMPSLPKPSALPPLPPMPTGPSIPSIPNFP 68
           LTFM T VFS++D++R +R LLQT   N+P +PSLPK   +PPLPP+P GP +PSIPN P
Sbjct: 10  LTFMATLVFSAIDSSRAARRLLQTAPPNMPGLPSLPKLMGMPPLPPLPMGPGMPSIPNLP 69

Query: 69  QPSLPKL-----TLPPLPSLPMNIP-TKVPLPPLPTTSLPNLPFLSSISTTLPSSLPFFS 128
           QP+ P +      LPPLPSLP+NIP T V  PPLPT        L SI TT P S+PF +
Sbjct: 70  QPTFPTIQPSLPKLPPLPSLPVNIPATGVVFPPLPT--------LPSIPTTFP-SIPFLT 127

[Close]
BLAST of Csa4G182280 vs. TrEMBL
Match: A0A061GNQ9_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_038432 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.1e-24
Identity = 69/132 (52.27%), Postives = 90/132 (68.18%), Query Frame = 1 

Query: 1   MASFNCFILTFMVTCVFSSVDAARTSRHLLQTILNLPPMPSLPKPSALPPLPPMPTGPSI 60
           MASFNCF+L F +   FSS++    +R+LLQ +  LPPMP+LP+ + LPPLP +P  P  
Sbjct: 1   MASFNCFVLAFFMAFSFSSINVGLAARYLLQ-MPPLPPMPTLPR-ATLPPLPSIPNLPQ- 60

Query: 61  PSIPNFP--QPSLPKL-TLPPLPSLPMNIPTKVPLPPLPTTSLPNLPFLSSISTTLPSSL 120
           P+ P  P  QPSLPK  TLPPLPS+P  +PT    P +    LPN+P + +I TT+P S+
Sbjct: 61  PTTPTLPTTQPSLPKPGTLPPLPSMP-TLPTIPNTPKITLPPLPNMPSIPTIPTTIP-SI 120

Query: 121 PFFSPPPATSSP 130
           PFFSPPPA +SP
Sbjct: 121 PFFSPPPAKTSP 127

[Close]
BLAST of Csa4G182280 vs. TrEMBL
Match: A0A061E279_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_007394 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 2.5e-24
Identity = 72/132 (54.55%), Postives = 90/132 (68.18%), Query Frame = 1 

Query: 1   MASFNCFILTFMVTCVFSSVDAARTSRHLLQTILNLPPMPSLPKPSALPPLPPMPTGPSI 60
           MASFNCFIL F +   FSS++  + +RHLLQ +  LPPMP+LP  + LPPLP +P  P  
Sbjct: 1   MASFNCFILAFFMALSFSSINVGQAARHLLQ-LPPLPPMPTLP-GATLPPLPSIPNLPQ- 60

Query: 61  PSIPNFPQ--PSLPKL-TLPPLPSLPMNIPTKVPLPPLPTTSLPNLPFLSSISTTLPSSL 120
           P+IP  P   PSLPK  TLPPLP++P     KV LPP     LP+LP + +I TT+P S+
Sbjct: 61  PTIPTLPTTLPSLPKPGTLPPLPTIP--TAPKVALPP-----LPSLPLVPTIPTTIP-SV 120

Query: 121 PFFSPPPATSSP 130
           PFFSPPPA +SP
Sbjct: 121 PFFSPPPAKTSP 121

[Close]
BLAST of Csa4G182280 vs. TrEMBL
Match: C6SW74_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_15G057500 PE=2 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 4.3e-24
Identity = 69/131 (52.67%), Postives = 89/131 (67.94%), Query Frame = 1 

Query: 1   MASFNCFILTFMVTCVFSSVDAARTSRHLLQTILNLPPMPSLPKPSALPPLPPMPTGPSI 60
           MAS +CFIL F +   FSS+D    +R+L+QT      +P+LPKP+ LPPLP +PT P+I
Sbjct: 1   MASNSCFILGFFIAISFSSMDIGLAARYLMQT-----TVPNLPKPT-LPPLPSLPTLPTI 60

Query: 61  PSIPNFPQPSLPKLTLPPLPSLPMNIPT--KVPLPPLPTTSLPNLPFLSSISTTLPSSLP 120
           P++P    P LP +   P PSLP NIPT  +V LPPL  TSLPN P   +I TT+P S P
Sbjct: 61  PTLPQGNVPPLPTIPSLPQPSLP-NIPTVPQVTLPPLAATSLPNFP---TIPTTIP-SFP 120

Query: 121 FFSPPPATSSP 130
           FFSPPP+++SP
Sbjct: 121 FFSPPPSSTSP 120

[Close]
BLAST of Csa4G182280 vs. TAIR10
Match: AT5G15780.1 (AT5G15780.1 Pollen Ole e 1 allergen and extensin family protein)

HSP 1 Score: 73.6 bits (179), Expect = 1.0e-13
Identity = 38/83 (45.78%), Postives = 47/83 (56.63%), Query Frame = 1 

Query: 36  LPPMPSLPKPSALPPLPPMPTGPSIPSIPNFPQPSLPKLTLPPLPSLPMNIPTKVPLPPL 95
           LPP P +P P +LPP+P +PT P++P+IP  P P  P  TLPP+P+    IPT  PLP L
Sbjct: 286 LPPNPLIPSPPSLPPIPLIPTPPTLPTIPLLPTPPTP--TLPPIPT----IPTLPPLPVL 345

Query: 96  PTTSLPNLPFLSSISTTLPSSLP 119
           P   + N P L     + P  LP
Sbjct: 346 PPVPIVNPPSLPPPPPSFPVPLP 362


HSP 2 Score: 63.5 bits (153), Expect = 1.1e-10
Identity = 42/100 (42.00%), Postives = 52/100 (52.00%), Query Frame = 1 

Query: 35  NLPPMPSLPKPSALP-----PLPPMPTGPSIPSIPNFPQ-PSLPKLTLPPLPSLPMNIPT 94
           +LPP+P +P P  LP     P PP PT P IP+IP  P  P LP + +   PSLP   P+
Sbjct: 297 SLPPIPLIPTPPTLPTIPLLPTPPTPTLPPIPTIPTLPPLPVLPPVPIVNPPSLPPPPPS 356

Query: 95  -KVPLPPLPTTSLPNLPFLSSISTTLPSSLPFFSPPPATS 128
             VPLPP+P   LP +P +  I    P+ L    PP + S
Sbjct: 357 FPVPLPPVP--GLPGIPPVPLIPGIPPAPLIPGIPPLSPS 394

[Close]
BLAST of Csa4G182280 vs. TAIR10
Match: AT2G22510.1 (AT2G22510.1 hydroxyproline-rich glycoprotein family protein)

HSP 1 Score: 60.5 bits (145), Expect = 9.1e-10
Identity = 45/138 (32.61%), Postives = 63/138 (45.65%), Query Frame = 1 

Query: 8   ILTFMVTCVFSSVDAARTSRHLLQ-------------------TILNLPPMPSLPKPSAL 67
           ++    T  F+ + A   SRHLLQ                   T+   PP  SLP+P+A 
Sbjct: 9   VIALTFTSFFTGLSA---SRHLLQSTPAITPPVTTTFPPLPTTTMPPFPPSTSLPQPTAF 68

Query: 68  PPLPPMPTGPSIPSIPNFPQP-SLPKLTLPPLPSLPMNIPTKVPLPPLPTTSLPNLPFLS 126
           PPLP       IPS+PN  QP ++P      +P+ P++IP   P          NLP   
Sbjct: 69  PPLP----SSQIPSLPNPAQPINIPNFPQINIPNFPISIPNNFPF---------NLP--- 123

[Close]
BLAST of Csa4G182280 vs. TAIR10
Match: AT5G09530.1 (AT5G09530.1 hydroxyproline-rich glycoprotein family protein)

HSP 1 Score: 55.5 bits (132), Expect = 2.9e-08
Identity = 35/106 (33.02%), Postives = 45/106 (42.45%), Query Frame = 1 

Query: 36  LPPMPSLPKPSALPPLPPMPTGPSIPSIPNFPQPSLPKL------TLPPLPSLPMNIPTK 95
           +P +P LPK   +P LP  P  P +P +P FP+P LPK+       LP +P +P    TK
Sbjct: 45  IPKLPELPK-FEVPKLPEFPK-PELPKLPEFPKPELPKIPEIPKPELPKVPEIPKPEETK 104

Query: 96  VP------LPPLPTTSLPNLPFLSSISTTLPSSLPFFSPPPATSSP 130
           +P      LP  P    P LP +  I       +P    P     P
Sbjct: 105 LPDIPKLELPKFPEIPKPELPKMPEIPKPELPKVPEIQKPELPKMP 148


HSP 2 Score: 52.4 bits (124), Expect = 2.5e-07
Identity = 37/103 (35.92%), Postives = 46/103 (44.66%), Query Frame = 1 

Query: 36  LPPMPSLPKPSALPPLP--PMPTGPSIPSI--------PNFPQPSLPKLTLPPLPSLPMN 95
           LP MP + KP  LP +P  P P  P++P +        P  P+P LPK+   P P LP  
Sbjct: 277 LPKMPEIQKPE-LPKVPEVPKPELPTVPEVPKSEAPKFPEIPKPELPKIPEVPKPELP-K 336

Query: 96  IP--TKVPLPPLPTTSLPNLPFLSSISTTLPSSLPFFSPPPAT 127
           +P  TK  +P +P   LP +P L          LP F   P T
Sbjct: 337 VPEITKPAVPEIPKPELPTMPQL--------PKLPEFPKVPGT 369


HSP 3 Score: 46.2 bits (108), Expect = 1.8e-05
Identity = 34/121 (28.10%), Postives = 40/121 (33.06%), Query Frame = 1 

Query: 36  LPPMPSLPKPSA-------LPPLPPMPTG-------------PSIPSIPNFPQPSLPKLT 95
           LP MP +PKP          P LP  P               P  P +P  P+P LPKL 
Sbjct: 144 LPKMPEIPKPELPKFPEIPKPDLPKFPENSKPEVPKLMETEKPEAPKVPEIPKPELPKLP 203

Query: 96  LPP---LPSLP----MNIPTKVPLPPLPTTSLPNLPFLSSISTTLPSSLPFFSPPPATSS 130
             P    P +P      +P    LP +P    P LP L  +       +P    P     
Sbjct: 204 EVPKLEAPKVPEIQKPELPKMPELPKMPEIQKPELPKLPEVPKLEAPKVPEIQKPELPKM 263

[Close]
BLAST of Csa4G182280 vs. TAIR10
Match: AT1G44224.1 (AT1G44224.1 ECA1 gametogenesis related family protein)

HSP 1 Score: 55.5 bits (132), Expect = 2.9e-08
Identity = 31/70 (44.29%), Postives = 44/70 (62.86%), Query Frame = 1 

Query: 29  LLQTILNLPPMPSLPKPSALPPLPPMPTGPSIPSIPNFPQ-PSLPKL-TLPPLPSLPMNI 88
           LL    ++P +P++P    +P LP +P+ P+IP IPN P+ P++P L  +P LP+LP +I
Sbjct: 75  LLPGFPSIPWLPNIPGIPIIPSLPNIPSLPTIPEIPNIPRIPNIPGLPNIPGLPNLP-SI 134

Query: 89  PTKVPLPPLP 97
           P    LPPLP
Sbjct: 135 PRIPGLPPLP 143

[Close]
BLAST of Csa4G182280 vs. TAIR10
Match: AT1G44191.1 (AT1G44191.1 ECA1 gametogenesis related family protein)

HSP 1 Score: 54.7 bits (130), Expect = 5.0e-08
Identity = 41/96 (42.71%), Postives = 43/96 (44.79%), Query Frame = 1 

Query: 37  PPMPSLPKPSALPPLPPMPTGPSIPSIPNFPQPSLPKLT-LPPLPSLPMNIPTKVPLPPL 96
           PP P  P PS+ PP P  P   S PS    P P  PK +  PP PS P  IP K P PP 
Sbjct: 79  PPSPKPPTPSSRPPSPLSPK-KSPPSPKPSPPPRTPKKSPPPPKPSSPPPIPKKSPPPPK 138

Query: 97  PTTSLPNLPFLS--SISTTLPSSLPFFSPPPATSSP 130
           P +S P  P  S      + P   P  SPPP   SP
Sbjct: 139 P-SSPPPTPKKSPPPPKPSSPPPSPKKSPPPPKPSP 172

[Close]
BLAST of Csa4G182280 vs. NCBI nr
Match: gi|700198739|gb|KGN53897.1| (hypothetical protein Csa_4G182280 [Cucumis sativus])

HSP 1 Score: 267.7 bits (683), Expect = 1.1e-68
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 1 

Query: 1   MASFNCFILTFMVTCVFSSVDAARTSRHLLQTILNLPPMPSLPKPSALPPLPPMPTGPSI 60
           MASFNCFILTFMVTCVFSSVDAARTSRHLLQTILNLPPMPSLPKPSALPPLPPMPTGPSI
Sbjct: 1   MASFNCFILTFMVTCVFSSVDAARTSRHLLQTILNLPPMPSLPKPSALPPLPPMPTGPSI 60

Query: 61  PSIPNFPQPSLPKLTLPPLPSLPMNIPTKVPLPPLPTTSLPNLPFLSSISTTLPSSLPFF 120
           PSIPNFPQPSLPKLTLPPLPSLPMNIPTKVPLPPLPTTSLPNLPFLSSISTTLPSSLPFF
Sbjct: 61  PSIPNFPQPSLPKLTLPPLPSLPMNIPTKVPLPPLPTTSLPNLPFLSSISTTLPSSLPFF 120

Query: 121 SPPPATSSP 130
           SPPPATSSP
Sbjct: 121 SPPPATSSP 129

[Close]
BLAST of Csa4G182280 vs. NCBI nr
Match: gi|778697598|ref|XP_011654355.1| (PREDICTED: RNA-binding protein 12 [Cucumis sativus])

HSP 1 Score: 132.5 bits (332), Expect = 5.3e-28
Identity = 72/127 (56.69%), Postives = 88/127 (69.29%), Query Frame = 1 

Query: 9   LTFMVTCVFSSVDAARTSRHLLQTIL-NLPPMPSLPKPSALPPLPPMPTGPSIPSIPNFP 68
           LTFM T VFS++D++R +R LLQT   N+P +PSLPK   +PPLPP+P GP +PSIPN P
Sbjct: 10  LTFMATLVFSAIDSSRAARRLLQTAPPNMPGLPSLPKLMGMPPLPPLPMGPGMPSIPNLP 69

Query: 69  QPSLPKL-----TLPPLPSLPMNIP-TKVPLPPLPTTSLPNLPFLSSISTTLPSSLPFFS 128
           QP+ P +      LPPLPSLP+NIP T V  PPLPT        L SI TT P S+PF +
Sbjct: 70  QPTFPTIQPSLPKLPPLPSLPVNIPATGVVFPPLPT--------LPSIPTTFP-SIPFLT 127

[Close]
BLAST of Csa4G182280 vs. NCBI nr
Match: gi|357476279|ref|XP_003608425.1| (hypothetical protein MTR_4g093950 [Medicago truncatula])

HSP 1 Score: 128.3 bits (321), Expect = 1.0e-26
Identity = 75/136 (55.15%), Postives = 93/136 (68.38%), Query Frame = 1 

Query: 1   MASFNCFILTFMVTCVFSSVDAARTSRHLLQTIL--NLPPMPSLPKPSALPPLPPMPTGP 60
           MA F  FI T ++    S++     +RHLLQT    NLP +P+LPKP+ LPPLP +P  P
Sbjct: 1   MAIFKSFITTLLLVVTISNMSLE--ARHLLQTTTQPNLPTIPTLPKPTTLPPLPSIPNMP 60

Query: 61  --SIPSIPNFPQPSLPKLTLPPLPSLPMNIPT--KVPLPPLP-TTSLPNLPFLSSISTTL 120
             ++P +P    PS+PKLT+PPLPSLP NIPT   + +PPLP  TSLPNLP   SI TT 
Sbjct: 61  QGNLPPLPTI--PSMPKLTMPPLPSLPTNIPTIPSLNIPPLPAVTSLPNLP---SIPTTF 120

Query: 121 PSSLPFFSPPPATSSP 130
           P S+PFFSPPP+TSSP
Sbjct: 121 P-SIPFFSPPPSTSSP 128

[Close]
BLAST of Csa4G182280 vs. NCBI nr
Match: gi|357476271|ref|XP_003608421.1| (leguminosin group485 secreted peptide [Medicago truncatula])

HSP 1 Score: 125.9 bits (315), Expect = 5.0e-26
Identity = 74/136 (54.41%), Postives = 92/136 (67.65%), Query Frame = 1 

Query: 1   MASFNCFILTFMVTCVFSSVDAARTSRHLLQTIL--NLPPMPSLPKPSALPPLPPMPTGP 60
           MA F   I T ++    S++     +RHLLQT    NLP +P+LPKP+ LPPLP +P  P
Sbjct: 1   MAIFKSLITTLLLVVTISNMSLE--ARHLLQTTTQPNLPTIPTLPKPTTLPPLPSIPNMP 60

Query: 61  --SIPSIPNFPQPSLPKLTLPPLPSLPMNIPT--KVPLPPLP-TTSLPNLPFLSSISTTL 120
             ++P +P    PS+PKLT+PPLPSLP NIPT   + +PPLP  TSLPNLP   SI TT 
Sbjct: 61  QGNLPPLPTI--PSMPKLTMPPLPSLPTNIPTIPSLNIPPLPAVTSLPNLP---SIPTTF 120

Query: 121 PSSLPFFSPPPATSSP 130
           P S+PFFSPPP+TSSP
Sbjct: 121 P-SIPFFSPPPSTSSP 128

[Close]
BLAST of Csa4G182280 vs. NCBI nr
Match: gi|659108948|ref|XP_008454468.1| (PREDICTED: proline-rich receptor-like protein kinase PERK2 isoform X1 [Cucumis melo])

HSP 1 Score: 123.6 bits (309), Expect = 2.5e-25
Identity = 70/117 (59.83%), Postives = 81/117 (69.23%), Query Frame = 1 

Query: 19  SVDAARTSRHLLQTIL-NLPPMPSLPKPSALPPLPPMPTGPSIPSIPNFPQPSLPKL--- 78
           S+D +R +R LLQT   N+P +PSLPKP  LPPLPP+P GP   SIPNFPQP+ P +   
Sbjct: 61  SIDTSRAARCLLQTAPPNMPGLPSLPKPIGLPPLPPLPMGPGTSSIPNFPQPTFPTIQPS 120

Query: 79  --TLPPLPSLPMNIPTK-VPLPPLPTTSLPNLPFLSSISTTLPSSLPFFSPPPATSS 129
              LPPLPSLP+NIPT    LPPL T SLP LP   SI TT P S+PF +PPPAT S
Sbjct: 121 LPKLPPLPSLPLNIPTTGAVLPPL-TNSLPTLP---SIPTTFP-SIPFLTPPPATHS 172

The following BLAST results are available for this feature:
BLAST of Csa4G182280 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RBM12_MOUSE5.5e-0941.49RNA-binding protein 12 OS=Mus musculus GN=Rbm12 PE=1 SV=3[more]
WNK2_HUMAN1.6e-0836.36Serine/threonine-protein kinase WNK2 OS=Homo sapiens GN=WNK2 PE=1 SV=4[more]
RBM12_PONAB3.6e-0840.43RNA-binding protein 12 OS=Pongo abelii GN=RBM12 PE=2 SV=1[more]
RBM12_MACMU3.6e-0840.43RNA-binding protein 12 OS=Macaca mulatta GN=RBM12 PE=2 SV=1[more]
RBM12_HUMAN3.6e-0840.43RNA-binding protein 12 OS=Homo sapiens GN=RBM12 PE=1 SV=1[more]
BLAST of Csa4G182280 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KZV3_CUCSA7.4e-69100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G182280 PE=4 SV=1[more]
A0A0A0KWI7_CUCSA3.7e-2856.69Uncharacterized protein OS=Cucumis sativus GN=Csa_4G182290 PE=4 SV=1[more]
A0A061GNQ9_THECC1.1e-2452.27Uncharacterized protein OS=Theobroma cacao GN=TCM_038432 PE=4 SV=1[more]
A0A061E279_THECC2.5e-2454.55Uncharacterized protein OS=Theobroma cacao GN=TCM_007394 PE=4 SV=1[more]
C6SW74_SOYBN4.3e-2452.67Uncharacterized protein OS=Glycine max GN=GLYMA_15G057500 PE=2 SV=1[more]
BLAST of Csa4G182280 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G15780.11.0e-1345.78 Pollen Ole e 1 allergen and extensin family protein[more]
AT2G22510.19.1e-1032.61 hydroxyproline-rich glycoprotein family protein[more]
AT5G09530.12.9e-0833.02 hydroxyproline-rich glycoprotein family protein[more]
AT1G44224.12.9e-0844.29 ECA1 gametogenesis related family protein[more]
AT1G44191.15.0e-0842.71 ECA1 gametogenesis related family protein[more]
BLAST of Csa4G182280 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700198739|gb|KGN53897.1|1.1e-68100.00hypothetical protein Csa_4G182280 [Cucumis sativus][more]
gi|778697598|ref|XP_011654355.1|5.3e-2856.69PREDICTED: RNA-binding protein 12 [Cucumis sativus][more]
gi|357476279|ref|XP_003608425.1|1.0e-2655.15hypothetical protein MTR_4g093950 [Medicago truncatula][more]
gi|357476271|ref|XP_003608421.1|5.0e-2654.41leguminosin group485 secreted peptide [Medicago truncatula][more]
gi|659108948|ref|XP_008454468.1|2.5e-2559.83PREDICTED: proline-rich receptor-like protein kinase PERK2 isoform X1 [Cucumis m... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU171476cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa4G182280.1Csa4G182280.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU171476CU171476transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33088FAMILY NOT NAMEDcoord: 1..129
score: 4.8

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa4G182280Wax gourdcuwgoB359
Csa4G182280Cucumber (Gy14) v1cgycuB469
Csa4G182280Cucurbita maxima (Rimu)cmacuB338
Csa4G182280Cucurbita moschata (Rifu)cmocuB327
Csa4G182280Melon (DHL92) v3.5.1cumeB302
Csa4G182280Watermelon (Charleston Gray)cuwcgB277
Csa4G182280Watermelon (97103) v1cuwmB295
Csa4G182280Watermelon (97103) v1cuwmB297
Csa4G182280Cucurbita pepo (Zucchini)cpecuB223
Csa4G182280Melon (DHL92) v3.6.1cumedB286
Csa4G182280Watermelon (97103) v2cuwmbB275
Csa4G182280Watermelon (97103) v2cuwmbB277