Csa4G056820 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa4G056820
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionCytochrome b6; contains IPR016174 (Di-haem cytochrome, transmembrane), IPR016175 (Cytochrome b/b6), IPR023530 (Cytochrome b6, PetB), IPR027387 (Cytochrome b/b6-like domain)
LocationChr4 : 4911827 .. 4912589 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GGGTCCCCTTGGTTTACCTATCTCAATAAAGTGTATGATTGGTTCAAAGAATCTCTTAAAATTCAGGCGATTGCGAATGATATGACTAGTAAATACGTTCCTCCTCATGTCAACATATTTTATTGTCTAGGAGGAATTACGATTACTTGTTTTTTAGTACAAGTAGCTACCGGGTTTGCTATGACTTTTTACTACCGTCTGACCGTTACTAAGGCTTTTGCTTCTGTTCAATATATAATGACAGAAGTAAATTTTGGTTGGTTAATCCGATCAGTTCATAGATGGTCGGCAAGTATGATGGTCTTAATGATGATCTTGCACGTATTTCCCGTGTATCTTACTGGTGGATTTAACAAACGTCGTGAATTGACTTGGGTTATAGATGTGGTTCTGGCTGTATTGACCGCATCCTTTGGTGTAACTGGGTATTCCTTACCTCAAGACCAAATTGGTTATTGGGCAATCAAAATTGTAACTAGTGTACCAGAAGCTATTCCAGTAATAAAGTCGCCTTTGGTAGAGTTGTTATGCGGAAGTACTAGTGTGAGACAATCTACCTTGACTAGTTTTTATAGTTTACACACTTTTGTATTACCTCTTCTTACGACCGTATTTATGTTAATGCACTTTCCAATGATACATAAGCAAGACATCTCTAGTCCTTTATAGATAATAGAAATTAGAAATCATAGATTTGTAATTAGTAATTTATGATTACTCAAGGGAAGAAGAGTATTTGGTTGGTGCAAATATGGATTATTGA

mRNA sequence

ATGACTAGTAAATACGTTCCTCCTCATGTCAACATATTTTATTGTCTAGGAGGAATTACGATTACTTGTTTTTTAGTACAAGTAGCTACCGGGTTTGCTATGACTTTTTACTACCGTCTGACCGTTACTAAGGCTTTTGCTTCTGTTCAATATATAATGACAGAAGTAAATTTTGGTTGGTTAATCCGATCAGTTCATAGATGGTCGGCAAGTATGATGGTCTTAATGATGATCTTGCACGTATTTCCCGTGTATCTTACTGGTGGATTTAACAAACGTCGTGAATTGACTTGGGTTATAGATGTGGTTCTGGCTGTATTGACCGCATCCTTTGGTGTAACTGGGTATTCCTTACCTCAAGACCAAATTGGTTATTGGGCAATCAAAATTGTAACTAGTGTACCAGAAGCTATTCCAGTAATAAAGTCGCCTTTGGTAGAGTTGTTATGCGGAAGTACTAGTGTGAGACAATCTACCTTGACTATAATTTATGATTACTCAAGGGAAGAAGAGTATTTGGTTGGTGCAAATATGGATTATTGA

Coding sequence (CDS)

ATGACTAGTAAATACGTTCCTCCTCATGTCAACATATTTTATTGTCTAGGAGGAATTACGATTACTTGTTTTTTAGTACAAGTAGCTACCGGGTTTGCTATGACTTTTTACTACCGTCTGACCGTTACTAAGGCTTTTGCTTCTGTTCAATATATAATGACAGAAGTAAATTTTGGTTGGTTAATCCGATCAGTTCATAGATGGTCGGCAAGTATGATGGTCTTAATGATGATCTTGCACGTATTTCCCGTGTATCTTACTGGTGGATTTAACAAACGTCGTGAATTGACTTGGGTTATAGATGTGGTTCTGGCTGTATTGACCGCATCCTTTGGTGTAACTGGGTATTCCTTACCTCAAGACCAAATTGGTTATTGGGCAATCAAAATTGTAACTAGTGTACCAGAAGCTATTCCAGTAATAAAGTCGCCTTTGGTAGAGTTGTTATGCGGAAGTACTAGTGTGAGACAATCTACCTTGACTATAATTTATGATTACTCAAGGGAAGAAGAGTATTTGGTTGGTGCAAATATGGATTATTGA

Protein sequence

MTSKYVPPHVNIFYCLGGITITCFLVQVATGFAMTFYYRLTVTKAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFPVYLTGGFNKRRELTWVIDVVLAVLTASFGVTGYSLPQDQIGYWAIKIVTSVPEAIPVIKSPLVELLCGSTSVRQSTLTIIYDYSREEEYLVGANMDY*
Homology
[Close]
BLAST of Csa4G056820 vs. Swiss-Prot
Match: CYB6_PIPCE (Cytochrome b6 OS=Piper cenocladum GN=petB PE=3 SV=1)

HSP 1 Score: 291.6 bits (745), Expect = 6.0e-78
Identity = 145/164 (88.41%), Postives = 148/164 (90.24%), Query Frame = 1 

Query: 1   MTSKYVPPHVNIFYCLGGITITCFLVQVATGFAMTFYYRLTVTKAFASVQYIMTEVNFGW 60
           +TSKYVPPHVNIFYCLGGIT+TCFLVQVATGFAMTFYYR TVT+AFASVQYIMTE NFGW
Sbjct: 21  ITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEANFGW 80

Query: 61  LIRSVHRWSASMMVLMMILHVFPVYLTGGFNKRRELTWVIDVVLAVLTASFGVTGYSLPQ 120
           LIRSVHRWSASMMVLMMILHVF VYLTGGF K RELTWV  V+LAVLTASFGVTGYSLP 
Sbjct: 81  LIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVILAVLTASFGVTGYSLPW 140

Query: 121 DQIGYWAIKIVTSVPEAIPVIKSPLVELLCGSTSVRQSTLTIIY 165
           DQIGYWA+KIVT VPEAIPVI SPLVELL GSTSV QSTLT  Y
Sbjct: 141 DQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSTSVGQSTLTRFY 184

[Close]
BLAST of Csa4G056820 vs. Swiss-Prot
Match: CYB6_COFAR (Cytochrome b6 OS=Coffea arabica GN=petB PE=3 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 7.8e-78
Identity = 145/164 (88.41%), Postives = 148/164 (90.24%), Query Frame = 1 

Query: 1   MTSKYVPPHVNIFYCLGGITITCFLVQVATGFAMTFYYRLTVTKAFASVQYIMTEVNFGW 60
           +TSKYVPPHVNIFYCLGGIT+TCFLVQVATGFAMTFYYR TVT+AFASVQYIMTE NFGW
Sbjct: 21  ITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEANFGW 80

Query: 61  LIRSVHRWSASMMVLMMILHVFPVYLTGGFNKRRELTWVIDVVLAVLTASFGVTGYSLPQ 120
           LIRSVHRWSASMMVLMMILHVF VYLTGGF K RELTWV  VVLAVLTASFGVTGYSLP+
Sbjct: 81  LIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPR 140

Query: 121 DQIGYWAIKIVTSVPEAIPVIKSPLVELLCGSTSVRQSTLTIIY 165
           DQIGYWA+KIVT VPEAIPVI SPLVELL GS SV QSTLT  Y
Sbjct: 141 DQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRFY 184

[Close]
BLAST of Csa4G056820 vs. Swiss-Prot
Match: CYB6_CUCSA (Cytochrome b6 OS=Cucumis sativus GN=petB PE=3 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 7.8e-78
Identity = 145/164 (88.41%), Postives = 148/164 (90.24%), Query Frame = 1 

Query: 1   MTSKYVPPHVNIFYCLGGITITCFLVQVATGFAMTFYYRLTVTKAFASVQYIMTEVNFGW 60
           +TSKYVPPHVNIFYCLGGIT+TCFLVQVATGFAMTFYYR TVT+AFASVQYIMTE NFGW
Sbjct: 21  ITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEANFGW 80

Query: 61  LIRSVHRWSASMMVLMMILHVFPVYLTGGFNKRRELTWVIDVVLAVLTASFGVTGYSLPQ 120
           LIRSVHRWSASMMVLMMILHVF VYLTGGF K RELTWV  VVLAVLTASFGVTGYSLP+
Sbjct: 81  LIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPR 140

Query: 121 DQIGYWAIKIVTSVPEAIPVIKSPLVELLCGSTSVRQSTLTIIY 165
           DQIGYWA+KIVT VPEAIPVI SPLVELL GS SV QSTLT  Y
Sbjct: 141 DQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRFY 184

[Close]
BLAST of Csa4G056820 vs. Swiss-Prot
Match: CYB6_LIRTU (Cytochrome b6 OS=Liriodendron tulipifera GN=petB PE=3 SV=1)

HSP 1 Score: 290.8 bits (743), Expect = 1.0e-77
Identity = 144/164 (87.80%), Postives = 148/164 (90.24%), Query Frame = 1 

Query: 1   MTSKYVPPHVNIFYCLGGITITCFLVQVATGFAMTFYYRLTVTKAFASVQYIMTEVNFGW 60
           +TSKYVPPHVNIFYCLGGIT+TCFLVQVATGFAMTFYYR TVT+AFASVQYIMTE NFGW
Sbjct: 21  ITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEANFGW 80

Query: 61  LIRSVHRWSASMMVLMMILHVFPVYLTGGFNKRRELTWVIDVVLAVLTASFGVTGYSLPQ 120
           LIRSVHRWSASMMVLMMILHVF VYLTGGF K RELTWV  V+LAVLTASFGVTGYSLP+
Sbjct: 81  LIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVILAVLTASFGVTGYSLPR 140

Query: 121 DQIGYWAIKIVTSVPEAIPVIKSPLVELLCGSTSVRQSTLTIIY 165
           DQIGYWA+KIVT VPEAIPVI SPLVELL GS SV QSTLT  Y
Sbjct: 141 DQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRFY 184

[Close]
BLAST of Csa4G056820 vs. Swiss-Prot
Match: CYB6_DAUCA (Cytochrome b6 OS=Daucus carota GN=petB PE=3 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 1.3e-77
Identity = 145/164 (88.41%), Postives = 147/164 (89.63%), Query Frame = 1 

Query: 1   MTSKYVPPHVNIFYCLGGITITCFLVQVATGFAMTFYYRLTVTKAFASVQYIMTEVNFGW 60
           +TSKYVPPHVNIFYCLGGIT+TCFLVQVATGFAMTFYYR TVT AFASVQYIMTE NFGW
Sbjct: 21  ITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTDAFASVQYIMTEANFGW 80

Query: 61  LIRSVHRWSASMMVLMMILHVFPVYLTGGFNKRRELTWVIDVVLAVLTASFGVTGYSLPQ 120
           LIRSVHRWSASMMVLMMILHVF VYLTGGF K RELTWV  VVLAVLTASFGVTGYSLP+
Sbjct: 81  LIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPR 140

Query: 121 DQIGYWAIKIVTSVPEAIPVIKSPLVELLCGSTSVRQSTLTIIY 165
           DQIGYWA+KIVT VPEAIPVI SPLVELL GS SV QSTLT  Y
Sbjct: 141 DQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRFY 184

[Close]
BLAST of Csa4G056820 vs. TrEMBL
Match: A0A0A0KXF0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G056820 PE=4 SV=1)

HSP 1 Score: 365.2 bits (936), Expect = 4.7e-98
Identity = 180/180 (100.00%), Postives = 180/180 (100.00%), Query Frame = 1 

Query: 1   MTSKYVPPHVNIFYCLGGITITCFLVQVATGFAMTFYYRLTVTKAFASVQYIMTEVNFGW 60
           MTSKYVPPHVNIFYCLGGITITCFLVQVATGFAMTFYYRLTVTKAFASVQYIMTEVNFGW
Sbjct: 1   MTSKYVPPHVNIFYCLGGITITCFLVQVATGFAMTFYYRLTVTKAFASVQYIMTEVNFGW 60

Query: 61  LIRSVHRWSASMMVLMMILHVFPVYLTGGFNKRRELTWVIDVVLAVLTASFGVTGYSLPQ 120
           LIRSVHRWSASMMVLMMILHVFPVYLTGGFNKRRELTWVIDVVLAVLTASFGVTGYSLPQ
Sbjct: 61  LIRSVHRWSASMMVLMMILHVFPVYLTGGFNKRRELTWVIDVVLAVLTASFGVTGYSLPQ 120

Query: 121 DQIGYWAIKIVTSVPEAIPVIKSPLVELLCGSTSVRQSTLTIIYDYSREEEYLVGANMDY 180
           DQIGYWAIKIVTSVPEAIPVIKSPLVELLCGSTSVRQSTLTIIYDYSREEEYLVGANMDY
Sbjct: 121 DQIGYWAIKIVTSVPEAIPVIKSPLVELLCGSTSVRQSTLTIIYDYSREEEYLVGANMDY 180

[Close]
BLAST of Csa4G056820 vs. TrEMBL
Match: A0A0N9E0H4_9MAGN (Cytochrome b6 OS=Machilus balansae GN=petB PE=3 SV=1)

HSP 1 Score: 292.7 bits (748), Expect = 3.0e-76
Identity = 146/164 (89.02%), Postives = 151/164 (92.07%), Query Frame = 1 

Query: 1   MTSKYVPPHVNIFYCLGGITITCFLVQVATGFAMTFYYRLTVTKAFASVQYIMTEVNFGW 60
           +TSKYVPPHVNIFYCLGGIT+TCFLVQVATGFAMTFYYR TVT+AFASVQYIMTEVNFGW
Sbjct: 21  ITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGW 80

Query: 61  LIRSVHRWSASMMVLMMILHVFPVYLTGGFNKRRELTWVIDVVLAVLTASFGVTGYSLPQ 120
           LIRSVHRWSASMMVLMMILHVF VYLTGGF K RELTWV  VVLAVLTASFGVTGYSLP+
Sbjct: 81  LIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPR 140

Query: 121 DQIGYWAIKIVTSVPEAIPVIKSPLVELLCGSTSVRQSTLTIIY 165
           DQIGYWA+KIVT VPEAIPVI SPLVELL GS SV QSTLT  Y
Sbjct: 141 DQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRFY 184

[Close]
BLAST of Csa4G056820 vs. TrEMBL
Match: A0A0S0ZIJ6_9ASTE (Cytochrome b6 (Fragment) OS=Oecopetalum mexicanum GN=petB PE=3 SV=1)

HSP 1 Score: 292.7 bits (748), Expect = 3.0e-76
Identity = 146/164 (89.02%), Postives = 151/164 (92.07%), Query Frame = 1 

Query: 1   MTSKYVPPHVNIFYCLGGITITCFLVQVATGFAMTFYYRLTVTKAFASVQYIMTEVNFGW 60
           +TSKYVPPHVNIFYCLGGIT+TCFLVQVATGFAMTFYYR TVT+AFASVQYIMTEVNFGW
Sbjct: 19  ITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGW 78

Query: 61  LIRSVHRWSASMMVLMMILHVFPVYLTGGFNKRRELTWVIDVVLAVLTASFGVTGYSLPQ 120
           LIRSVHRWSASMMVLMMILHVF VYLTGGF K RELTWV  VVLAVLTASFGVTGYSLP+
Sbjct: 79  LIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPR 138

Query: 121 DQIGYWAIKIVTSVPEAIPVIKSPLVELLCGSTSVRQSTLTIIY 165
           DQIGYWA+KIVT VPEAIPVI SPLVELL GS SV QSTLT  Y
Sbjct: 139 DQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRFY 182

[Close]
BLAST of Csa4G056820 vs. TrEMBL
Match: A0A0N9DZQ2_9MAGN (Cytochrome b6 OS=Machilus yunnanensis GN=petB PE=3 SV=1)

HSP 1 Score: 292.7 bits (748), Expect = 3.0e-76
Identity = 146/164 (89.02%), Postives = 151/164 (92.07%), Query Frame = 1 

Query: 1   MTSKYVPPHVNIFYCLGGITITCFLVQVATGFAMTFYYRLTVTKAFASVQYIMTEVNFGW 60
           +TSKYVPPHVNIFYCLGGIT+TCFLVQVATGFAMTFYYR TVT+AFASVQYIMTEVNFGW
Sbjct: 21  ITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGW 80

Query: 61  LIRSVHRWSASMMVLMMILHVFPVYLTGGFNKRRELTWVIDVVLAVLTASFGVTGYSLPQ 120
           LIRSVHRWSASMMVLMMILHVF VYLTGGF K RELTWV  VVLAVLTASFGVTGYSLP+
Sbjct: 81  LIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPR 140

Query: 121 DQIGYWAIKIVTSVPEAIPVIKSPLVELLCGSTSVRQSTLTIIY 165
           DQIGYWA+KIVT VPEAIPVI SPLVELL GS SV QSTLT  Y
Sbjct: 141 DQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRFY 184

[Close]
BLAST of Csa4G056820 vs. TrEMBL
Match: D3WER5_9ROSI (Cytochrome b6 OS=Oxalis latifolia GN=petB PE=3 SV=1)

HSP 1 Score: 292.7 bits (748), Expect = 3.0e-76
Identity = 145/166 (87.35%), Postives = 151/166 (90.96%), Query Frame = 1 

Query: 1   MTSKYVPPHVNIFYCLGGITITCFLVQVATGFAMTFYYRLTVTKAFASVQYIMTEVNFGW 60
           +TSKYVPPHVNIFYCLGGIT+TCFLVQVATGFAMTFYYR TVT+AFASVQYIMTE NFGW
Sbjct: 21  ITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEANFGW 80

Query: 61  LIRSVHRWSASMMVLMMILHVFPVYLTGGFNKRRELTWVIDVVLAVLTASFGVTGYSLPQ 120
           LIRSVHRWSASMMVLMMILHVF VYLTGGF K RELTWV  V+LAVLTASFGVTGYSLP 
Sbjct: 81  LIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVILAVLTASFGVTGYSLPW 140

Query: 121 DQIGYWAIKIVTSVPEAIPVIKSPLVELLCGSTSVRQSTLTIIYDY 167
           DQIGYWA+KIVT VPEAIPVI SPLVELL GSTSV QSTLT  Y +
Sbjct: 141 DQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSTSVGQSTLTRFYSF 186

[Close]
BLAST of Csa4G056820 vs. TAIR10
Match: ATCG00720.1 (ATCG00720.1 photosynthetic electron transfer B)

HSP 1 Score: 287.3 bits (734), Expect = 6.4e-78
Identity = 143/164 (87.20%), Postives = 146/164 (89.02%), Query Frame = 1 

Query: 1   MTSKYVPPHVNIFYCLGGITITCFLVQVATGFAMTFYYRLTVTKAFASVQYIMTEVNFGW 60
           +TSKYVPPHVNIFYCLGGIT+TCFLVQVATGFAMTFYYR TVT+AFASVQYIMTE NFGW
Sbjct: 21  ITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEANFGW 80

Query: 61  LIRSVHRWSASMMVLMMILHVFPVYLTGGFNKRRELTWVIDVVLAVLTASFGVTGYSLPQ 120
           LIRSVHRWSASMMVLMMILHVF VYLTGGF K RELTWV  VVL VLTASFGVTGYSLP 
Sbjct: 81  LIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVVLGVLTASFGVTGYSLPW 140

Query: 121 DQIGYWAIKIVTSVPEAIPVIKSPLVELLCGSTSVRQSTLTIIY 165
           DQIGYWA+KIVT VP+AIPVI SPLVELL GS SV QSTLT  Y
Sbjct: 141 DQIGYWAVKIVTGVPDAIPVIGSPLVELLRGSASVGQSTLTRFY 184

[Close]
BLAST of Csa4G056820 vs. TAIR10
Match: AT2G07727.1 (AT2G07727.1 Di-haem cytochrome, transmembrane;Cytochrome b/b6, C-terminal)

HSP 1 Score: 105.1 bits (261), Expect = 4.5e-23
Identity = 55/173 (31.79%), Postives = 91/173 (52.60%), Query Frame = 1 

Query: 7   PPHVNIFYCLGGITITCFLVQVATGFAMTFYYRLTVTKAFASVQYIMTEVNFGWLIRSVH 66
           P +++ ++  G +   C ++Q+ TG  +  +Y   V  AF SV++IM +V  GWL+R +H
Sbjct: 29  PSNLSYWWGFGPLAGICLVIQIVTGVFLAMHYTPHVDLAFNSVEHIMRDVEGGWLLRYMH 88

Query: 67  RWSASMMVLMMILHVFPVYLTGGFNKRRELTWVIDVVLAVLTASFGVTGYSLPQDQIGYW 126
              ASM ++++ LH+F       ++  RE  W + VV+ +L       GY LP  Q+ +W
Sbjct: 89  ANGASMFLIVVYLHIFRGLYHASYSSPREFVWCLGVVIFLLMIVTAFIGYVLPWGQMSFW 148

Query: 127 AIKIVTSVPEAIPVIKSPLVELLCGSTSVRQSTLTIIYDYSREEEY-LVGANM 179
              ++TS+  AIPV+   +V  L G  SV  +TL   +       + LVGA++
Sbjct: 149 GATVITSLASAIPVVGDTIVTWLWGGFSVDNATLNRFFSLHHLLPFILVGASL 201

[Close]
BLAST of Csa4G056820 vs. TAIR10
Match: ATMG00220.1 (ATMG00220.1 apocytochrome b)

HSP 1 Score: 105.1 bits (261), Expect = 4.5e-23
Identity = 55/173 (31.79%), Postives = 91/173 (52.60%), Query Frame = 1 

Query: 7   PPHVNIFYCLGGITITCFLVQVATGFAMTFYYRLTVTKAFASVQYIMTEVNFGWLIRSVH 66
           P +++ ++  G +   C ++Q+ TG  +  +Y   V  AF SV++IM +V  GWL+R +H
Sbjct: 29  PSNLSYWWGFGPLAGICLVIQIVTGVFLAMHYTPHVDLAFNSVEHIMRDVEGGWLLRYMH 88

Query: 67  RWSASMMVLMMILHVFPVYLTGGFNKRRELTWVIDVVLAVLTASFGVTGYSLPQDQIGYW 126
              ASM ++++ LH+F       ++  RE  W + VV+ +L       GY LP  Q+ +W
Sbjct: 89  ANGASMFLIVVYLHIFRGLYHASYSSPREFVWCLGVVIFLLMIVTAFIGYVLPWGQMSFW 148

Query: 127 AIKIVTSVPEAIPVIKSPLVELLCGSTSVRQSTLTIIYDYSREEEY-LVGANM 179
              ++TS+  AIPV+   +V  L G  SV  +TL   +       + LVGA++
Sbjct: 149 GATVITSLASAIPVVGDTIVTWLWGGFSVDNATLNRFFSLHHLLPFILVGASL 201

[Close]
BLAST of Csa4G056820 vs. NCBI nr
Match: gi|700198336|gb|KGN53494.1| (hypothetical protein Csa_4G056820 [Cucumis sativus])

HSP 1 Score: 365.2 bits (936), Expect = 6.8e-98
Identity = 180/180 (100.00%), Postives = 180/180 (100.00%), Query Frame = 1 

Query: 1   MTSKYVPPHVNIFYCLGGITITCFLVQVATGFAMTFYYRLTVTKAFASVQYIMTEVNFGW 60
           MTSKYVPPHVNIFYCLGGITITCFLVQVATGFAMTFYYRLTVTKAFASVQYIMTEVNFGW
Sbjct: 1   MTSKYVPPHVNIFYCLGGITITCFLVQVATGFAMTFYYRLTVTKAFASVQYIMTEVNFGW 60

Query: 61  LIRSVHRWSASMMVLMMILHVFPVYLTGGFNKRRELTWVIDVVLAVLTASFGVTGYSLPQ 120
           LIRSVHRWSASMMVLMMILHVFPVYLTGGFNKRRELTWVIDVVLAVLTASFGVTGYSLPQ
Sbjct: 61  LIRSVHRWSASMMVLMMILHVFPVYLTGGFNKRRELTWVIDVVLAVLTASFGVTGYSLPQ 120

Query: 121 DQIGYWAIKIVTSVPEAIPVIKSPLVELLCGSTSVRQSTLTIIYDYSREEEYLVGANMDY 180
           DQIGYWAIKIVTSVPEAIPVIKSPLVELLCGSTSVRQSTLTIIYDYSREEEYLVGANMDY
Sbjct: 121 DQIGYWAIKIVTSVPEAIPVIKSPLVELLCGSTSVRQSTLTIIYDYSREEEYLVGANMDY 180

[Close]
BLAST of Csa4G056820 vs. NCBI nr
Match: gi|937633354|gb|ALI90257.1| (PetB, partial (chloroplast) [Oecopetalum mexicanum])

HSP 1 Score: 292.7 bits (748), Expect = 4.3e-76
Identity = 146/164 (89.02%), Postives = 151/164 (92.07%), Query Frame = 1 

Query: 1   MTSKYVPPHVNIFYCLGGITITCFLVQVATGFAMTFYYRLTVTKAFASVQYIMTEVNFGW 60
           +TSKYVPPHVNIFYCLGGIT+TCFLVQVATGFAMTFYYR TVT+AFASVQYIMTEVNFGW
Sbjct: 19  ITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGW 78

Query: 61  LIRSVHRWSASMMVLMMILHVFPVYLTGGFNKRRELTWVIDVVLAVLTASFGVTGYSLPQ 120
           LIRSVHRWSASMMVLMMILHVF VYLTGGF K RELTWV  VVLAVLTASFGVTGYSLP+
Sbjct: 79  LIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPR 138

Query: 121 DQIGYWAIKIVTSVPEAIPVIKSPLVELLCGSTSVRQSTLTIIY 165
           DQIGYWA+KIVT VPEAIPVI SPLVELL GS SV QSTLT  Y
Sbjct: 139 DQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRFY 182

[Close]
BLAST of Csa4G056820 vs. NCBI nr
Match: gi|938339983|ref|YP_009172009.1| (cytochrome b6 (chloroplast) [Machilus yunnanensis])

HSP 1 Score: 292.7 bits (748), Expect = 4.3e-76
Identity = 146/164 (89.02%), Postives = 151/164 (92.07%), Query Frame = 1 

Query: 1   MTSKYVPPHVNIFYCLGGITITCFLVQVATGFAMTFYYRLTVTKAFASVQYIMTEVNFGW 60
           +TSKYVPPHVNIFYCLGGIT+TCFLVQVATGFAMTFYYR TVT+AFASVQYIMTEVNFGW
Sbjct: 21  ITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGW 80

Query: 61  LIRSVHRWSASMMVLMMILHVFPVYLTGGFNKRRELTWVIDVVLAVLTASFGVTGYSLPQ 120
           LIRSVHRWSASMMVLMMILHVF VYLTGGF K RELTWV  VVLAVLTASFGVTGYSLP+
Sbjct: 81  LIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPR 140

Query: 121 DQIGYWAIKIVTSVPEAIPVIKSPLVELLCGSTSVRQSTLTIIY 165
           DQIGYWA+KIVT VPEAIPVI SPLVELL GS SV QSTLT  Y
Sbjct: 141 DQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRFY 184

[Close]
BLAST of Csa4G056820 vs. NCBI nr
Match: gi|290489422|gb|ADD31095.1| (cytochrome b6 protein (chloroplast) [Oxalis latifolia])

HSP 1 Score: 292.7 bits (748), Expect = 4.3e-76
Identity = 145/166 (87.35%), Postives = 151/166 (90.96%), Query Frame = 1 

Query: 1   MTSKYVPPHVNIFYCLGGITITCFLVQVATGFAMTFYYRLTVTKAFASVQYIMTEVNFGW 60
           +TSKYVPPHVNIFYCLGGIT+TCFLVQVATGFAMTFYYR TVT+AFASVQYIMTE NFGW
Sbjct: 21  ITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEANFGW 80

Query: 61  LIRSVHRWSASMMVLMMILHVFPVYLTGGFNKRRELTWVIDVVLAVLTASFGVTGYSLPQ 120
           LIRSVHRWSASMMVLMMILHVF VYLTGGF K RELTWV  V+LAVLTASFGVTGYSLP 
Sbjct: 81  LIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVILAVLTASFGVTGYSLPW 140

Query: 121 DQIGYWAIKIVTSVPEAIPVIKSPLVELLCGSTSVRQSTLTIIYDY 167
           DQIGYWA+KIVT VPEAIPVI SPLVELL GSTSV QSTLT  Y +
Sbjct: 141 DQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSTSVGQSTLTRFYSF 186

[Close]
BLAST of Csa4G056820 vs. NCBI nr
Match: gi|984911667|gb|AMC31270.1| (cytochrome b6 (chloroplast) [Oxalis dillenii])

HSP 1 Score: 292.4 bits (747), Expect = 5.6e-76
Identity = 144/166 (86.75%), Postives = 151/166 (90.96%), Query Frame = 1 

Query: 1   MTSKYVPPHVNIFYCLGGITITCFLVQVATGFAMTFYYRLTVTKAFASVQYIMTEVNFGW 60
           +TSKYVPPHVNIFYCLGGIT+TCFLVQVATGFAMTFYYR TVT+AFASVQYIMTE NFGW
Sbjct: 21  ITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEANFGW 80

Query: 61  LIRSVHRWSASMMVLMMILHVFPVYLTGGFNKRRELTWVIDVVLAVLTASFGVTGYSLPQ 120
           LIRSVHRWSASMMVLMMILHVF VYLTGGF K RELTWV  V+L VLTASFGVTGYSLP+
Sbjct: 81  LIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVILGVLTASFGVTGYSLPR 140

Query: 121 DQIGYWAIKIVTSVPEAIPVIKSPLVELLCGSTSVRQSTLTIIYDY 167
           DQIGYWA+KIVT VPEAIPVI SPLVELL GSTSV QSTLT  Y +
Sbjct: 141 DQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSTSVGQSTLTRFYSF 186

The following BLAST results are available for this feature:
BLAST of Csa4G056820 vs. Swiss-Prot
Match NameE-valueIdentityDescription
CYB6_PIPCE6.0e-7888.41Cytochrome b6 OS=Piper cenocladum GN=petB PE=3 SV=1[more]
CYB6_COFAR7.8e-7888.41Cytochrome b6 OS=Coffea arabica GN=petB PE=3 SV=1[more]
CYB6_CUCSA7.8e-7888.41Cytochrome b6 OS=Cucumis sativus GN=petB PE=3 SV=1[more]
CYB6_LIRTU1.0e-7787.80Cytochrome b6 OS=Liriodendron tulipifera GN=petB PE=3 SV=1[more]
CYB6_DAUCA1.3e-7788.41Cytochrome b6 OS=Daucus carota GN=petB PE=3 SV=1[more]
BLAST of Csa4G056820 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KXF0_CUCSA4.7e-98100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G056820 PE=4 SV=1[more]
A0A0N9E0H4_9MAGN3.0e-7689.02Cytochrome b6 OS=Machilus balansae GN=petB PE=3 SV=1[more]
A0A0S0ZIJ6_9ASTE3.0e-7689.02Cytochrome b6 (Fragment) OS=Oecopetalum mexicanum GN=petB PE=3 SV=1[more]
A0A0N9DZQ2_9MAGN3.0e-7689.02Cytochrome b6 OS=Machilus yunnanensis GN=petB PE=3 SV=1[more]
D3WER5_9ROSI3.0e-7687.35Cytochrome b6 OS=Oxalis latifolia GN=petB PE=3 SV=1[more]
BLAST of Csa4G056820 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG00720.16.4e-7887.20ATCG00720.1 photosynthetic electron transfer B[more]
AT2G07727.14.5e-2331.79 Di-haem cytochrome, transmembrane;Cytochrome b/b6, C-terminal[more]
ATMG00220.14.5e-2331.79ATMG00220.1 apocytochrome b[more]
BLAST of Csa4G056820 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700198336|gb|KGN53494.1|6.8e-98100.00hypothetical protein Csa_4G056820 [Cucumis sativus][more]
gi|937633354|gb|ALI90257.1|4.3e-7689.02PetB, partial (chloroplast) [Oecopetalum mexicanum][more]
gi|938339983|ref|YP_009172009.1|4.3e-7689.02cytochrome b6 (chloroplast) [Machilus yunnanensis][more]
gi|290489422|gb|ADD31095.1|4.3e-7687.35cytochrome b6 protein (chloroplast) [Oxalis latifolia][more]
gi|984911667|gb|AMC31270.1|5.6e-7686.75cytochrome b6 (chloroplast) [Oxalis dillenii][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005797Cyt_b/b6_N
IPR016174Di-haem_cyt_TM
IPR023530Cyt_B6_PetB
IPR027387Cytb/b6-like_sf
Vocabulary: Molecular Function
TermDefinition
GO:0009055electron carrier activity
GO:0016491oxidoreductase activity
GO:0045158electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity
GO:0005506iron ion binding
GO:0020037heme binding
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0022904respiratory electron transport chain
GO:0022900electron transport chain
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015979 photosynthesis
biological_process GO:0022904 respiratory electron transport chain
biological_process GO:0022900 electron transport chain
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
molecular_function GO:0045158 electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity
molecular_function GO:0020037 heme binding
molecular_function GO:0005506 iron ion binding
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0009055 electron carrier activity
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU143263cucumber EST collection version 3.0transcribed_cluster
CU158575cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa4G056820.1Csa4G056820.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU158575CU158575transcribed_cluster
CU143263CU143263transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005797Cytochrome b/b6, N-terminalPFAMPF00033Cytochrome_Bcoord: 2..164
score: 4.1
IPR005797Cytochrome b/b6, N-terminalPROFILEPS51002CYTB_NTERcoord: 1..180
score: 25
IPR016174Di-haem cytochrome, transmembraneunknownSSF81342Transmembrane di-heme cytochromescoord: 3..164
score: 1.24
IPR023530Cytochrome b6, PetBPIRPIRSF000032Cytochrome_b6coord: 1..168
score: 2.2
IPR027387Cytochrome b/b6-like domainGENE3DG3DSA:1.20.810.10coord: 2..164
score: 2.5
NoneNo IPR availablePANTHERPTHR19271CYTOCHROME Bcoord: 1..164
score: 3.6E
NoneNo IPR availablePANTHERPTHR19271:SF8CYTOCHROME B6coord: 1..164
score: 3.6E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa4G056820Cucsa.180050Cucumber (Gy14) v1cgycuB275
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa4G056820Wax gourdcuwgoB365
Csa4G056820Cucumber (Chinese Long) v2cucuB136
Csa4G056820Cucurbita maxima (Rimu)cmacuB337
Csa4G056820Cucurbita maxima (Rimu)cmacuB708
Csa4G056820Cucurbita moschata (Rifu)cmocuB325
Csa4G056820Cucurbita moschata (Rifu)cmocuB699
Csa4G056820Watermelon (Charleston Gray)cuwcgB324
Csa4G056820Watermelon (97103) v1cuwmB311
Csa4G056820Cucurbita pepo (Zucchini)cpecuB221
Csa4G056820Cucurbita pepo (Zucchini)cpecuB399
Csa4G056820Bottle gourd (USVL1VR-Ls)culsiB296
Csa4G056820Bottle gourd (USVL1VR-Ls)culsiB304
Csa4G056820Cucumber (Gy14) v2cgybcuB165
Csa4G056820Cucumber (Gy14) v2cgybcuB175
Csa4G056820Silver-seed gourdcarcuB0047
Csa4G056820Silver-seed gourdcarcuB0677
Csa4G056820Watermelon (97103) v2cuwmbB321