Csa1G659080 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G659080
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionGlutamate receptor 3.6
LocationChr1 : 26461963 .. 26462592 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCTCTTCCACCTGTCATACAAATGTTGTAATTCATTATTATTTTTCTACTTTATTCATCTCTAAAATAGGGGTTTACTGTGTATAAAATGCTGCCATGCATACTCAATAATATATCAGAAAAGAGAGAAGGATTTTCTCTAAAATATCACTATTCTTCATACCTTATTTTGGTATCAGAGCACTAATGACCTACGCCACCCCTATCTCTGCTACTTTTTCTTTTTCAAATCCCCTATTAAACCAAGTTTTGAACCAACTAACCACTCTCAAACTTGAAAGAGGAAATTATCTACTATGGACAACACTTACTCCGGCACCACTGTGACTGAACCTTGTCCAGAAACTAGTGATGGTGCGTCTTCAAGCTCCTCATTTGACAAAGTAGTCAATCTTGAATTTGAAAAATGGGTTACAGCCGATTTGTTACTACTTGGATGGTTGTACAACTCCATCACTCCTGAAGTTGCTGTTCAACTTTTGGGATTCAATAATGCCAAAGACTTGTGGGAAGCAACACAAGAGCTATTTGGCTTCAGTCAATGGCAGAAGAGGACTATCTTTGCCAGATTTTTCAAACAACTCGAAAATGTAACACGAAAATGGAAGATTATTTACGCACTTTGA

mRNA sequence

ATGGCTCTCTTCCACCTTGATGGTGCGTCTTCAAGCTCCTCATTTGACAAAGTAGTCAATCTTGAATTTGAAAAATGGGTTACAGCCGATTTGTTACTACTTGGATGGTTGTACAACTCCATCACTCCTGAAGTTGCTGTTCAACTTTTGGGATTCAATAATGCCAAAGACTTGTGGGAAGCAACACAAGAGCTATTTGGCTTCAGTCAATGGCAGAAGAGGACTATCTTTGCCAGATTTTTCAAACAACTCGAAAATGTAACACGAAAATGGAAGATTATTTACGCACTTTGA

Coding sequence (CDS)

ATGGCTCTCTTCCACCTTGATGGTGCGTCTTCAAGCTCCTCATTTGACAAAGTAGTCAATCTTGAATTTGAAAAATGGGTTACAGCCGATTTGTTACTACTTGGATGGTTGTACAACTCCATCACTCCTGAAGTTGCTGTTCAACTTTTGGGATTCAATAATGCCAAAGACTTGTGGGAAGCAACACAAGAGCTATTTGGCTTCAGTCAATGGCAGAAGAGGACTATCTTTGCCAGATTTTTCAAACAACTCGAAAATGTAACACGAAAATGGAAGATTATTTACGCACTTTGA

Protein sequence

MALFHLDGASSSSSFDKVVNLEFEKWVTADLLLLGWLYNSITPEVAVQLLGFNNAKDLWEATQELFGFSQWQKRTIFARFFKQLENVTRKWKIIYAL*
Homology
[Close]
BLAST of Csa1G659080 vs. TrEMBL
Match: A0A0A0M380_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G659080 PE=4 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 1.4e-48
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 1 

Query: 1  MALFHLDGASSSSSFDKVVNLEFEKWVTADLLLLGWLYNSITPEVAVQLLGFNNAKDLWE 60
          MALFHLDGASSSSSFDKVVNLEFEKWVTADLLLLGWLYNSITPEVAVQLLGFNNAKDLWE
Sbjct: 1  MALFHLDGASSSSSFDKVVNLEFEKWVTADLLLLGWLYNSITPEVAVQLLGFNNAKDLWE 60

Query: 61 ATQELFGFSQWQKRTIFARFFKQLENVTRKWKIIYAL 98
          ATQELFGFSQWQKRTIFARFFKQLENVTRKWKIIYAL
Sbjct: 61 ATQELFGFSQWQKRTIFARFFKQLENVTRKWKIIYAL 97

[Close]
BLAST of Csa1G659080 vs. TrEMBL
Match: A0A151TYZ8_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_004833 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 5.5e-08
Identity = 32/77 (41.56%), Postives = 45/77 (58.44%), Query Frame = 1 

Query: 16  DKVVNLEFEKWVTADLLLLGWLYNSITPEVAVQLLGFNNAKDLWEATQELFGFSQWQKRT 75
           +K VNL +E+W+  D  LLGWL+NS+T ++A QLL ++  K LWEA+Q L G     +  
Sbjct: 57  NKKVNLTYEEWIANDQQLLGWLFNSMTHDIATQLLHYDTLKKLWEASQSLAGAQSRSRVM 116

Query: 76  IFARFFKQLENVTRKWK 93
           +    F     VT K K
Sbjct: 117 LLKSKFHCTRKVTLKTK 133

[Close]
BLAST of Csa1G659080 vs. TrEMBL
Match: A0A151R2B9_CAJCA (Uncharacterized protein (Fragment) OS=Cajanus cajan GN=KK1_042178 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.0e-06
Identity = 28/64 (43.75%), Postives = 36/64 (56.25%), Query Frame = 1 

Query: 25 KWVTADLLLLGWLYNSITPEVAVQLLGFNNAKDLWEATQELFGFSQWQKRTIFARFFKQL 84
          KW+T D  LLGWL+NS+T +VA QLL +  +KD WE  Q L G     + T+    F   
Sbjct: 1  KWITNDQQLLGWLFNSMTRDVATQLLHYETSKDFWEGAQSLVGAHSRSRVTLLKIEFHST 60

Query: 85 ENVT 89
           N T
Sbjct: 61 RNET 64

[Close]
BLAST of Csa1G659080 vs. NCBI nr
Match: gi|700211590|gb|KGN66686.1| (hypothetical protein Csa_1G659080 [Cucumis sativus])

HSP 1 Score: 199.9 bits (507), Expect = 2.1e-48
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 1 

Query: 1  MALFHLDGASSSSSFDKVVNLEFEKWVTADLLLLGWLYNSITPEVAVQLLGFNNAKDLWE 60
          MALFHLDGASSSSSFDKVVNLEFEKWVTADLLLLGWLYNSITPEVAVQLLGFNNAKDLWE
Sbjct: 1  MALFHLDGASSSSSFDKVVNLEFEKWVTADLLLLGWLYNSITPEVAVQLLGFNNAKDLWE 60

Query: 61 ATQELFGFSQWQKRTIFARFFKQLENVTRKWKIIYAL 98
          ATQELFGFSQWQKRTIFARFFKQLENVTRKWKIIYAL
Sbjct: 61 ATQELFGFSQWQKRTIFARFFKQLENVTRKWKIIYAL 97

[Close]
BLAST of Csa1G659080 vs. NCBI nr
Match: gi|1012361062|gb|KYP72245.1| (hypothetical protein KK1_004833 [Cajanus cajan])

HSP 1 Score: 65.1 bits (157), Expect = 7.9e-08
Identity = 32/77 (41.56%), Postives = 45/77 (58.44%), Query Frame = 1 

Query: 16  DKVVNLEFEKWVTADLLLLGWLYNSITPEVAVQLLGFNNAKDLWEATQELFGFSQWQKRT 75
           +K VNL +E+W+  D  LLGWL+NS+T ++A QLL ++  K LWEA+Q L G     +  
Sbjct: 57  NKKVNLTYEEWIANDQQLLGWLFNSMTHDIATQLLHYDTLKKLWEASQSLAGAQSRSRVM 116

Query: 76  IFARFFKQLENVTRKWK 93
           +    F     VT K K
Sbjct: 117 LLKSKFHCTRKVTLKTK 133

[Close]
BLAST of Csa1G659080 vs. NCBI nr
Match: gi|1012324727|gb|KYP36690.1| (hypothetical protein KK1_042178, partial [Cajanus cajan])

HSP 1 Score: 59.3 bits (142), Expect = 4.3e-06
Identity = 28/64 (43.75%), Postives = 36/64 (56.25%), Query Frame = 1 

Query: 25 KWVTADLLLLGWLYNSITPEVAVQLLGFNNAKDLWEATQELFGFSQWQKRTIFARFFKQL 84
          KW+T D  LLGWL+NS+T +VA QLL +  +KD WE  Q L G     + T+    F   
Sbjct: 1  KWITNDQQLLGWLFNSMTRDVATQLLHYETSKDFWEGAQSLVGAHSRSRVTLLKIEFHST 60

Query: 85 ENVT 89
           N T
Sbjct: 61 RNET 64

The following BLAST results are available for this feature:
BLAST of Csa1G659080 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0M380_CUCSA1.4e-48100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G659080 PE=4 SV=1[more]
A0A151TYZ8_CAJCA5.5e-0841.56Uncharacterized protein OS=Cajanus cajan GN=KK1_004833 PE=4 SV=1[more]
A0A151R2B9_CAJCA3.0e-0643.75Uncharacterized protein (Fragment) OS=Cajanus cajan GN=KK1_042178 PE=4 SV=1[more]
BLAST of Csa1G659080 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700211590|gb|KGN66686.1|2.1e-48100.00hypothetical protein Csa_1G659080 [Cucumis sativus][more]
gi|1012361062|gb|KYP72245.1|7.9e-0841.56hypothetical protein KK1_004833 [Cajanus cajan][more]
gi|1012324727|gb|KYP36690.1|4.3e-0643.75hypothetical protein KK1_042178, partial [Cajanus cajan][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G659080.1Csa1G659080.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G659080Watermelon (97103) v2cuwmbB035
Csa1G659080Wax gourdcuwgoB090
Csa1G659080Cucumber (Gy14) v1cgycuB500
Csa1G659080Cucurbita maxima (Rimu)cmacuB057
Csa1G659080Cucurbita maxima (Rimu)cmacuB085
Csa1G659080Cucurbita moschata (Rifu)cmocuB075
Csa1G659080Cucurbita moschata (Rifu)cmocuB047
Csa1G659080Melon (DHL92) v3.5.1cumeB043
Csa1G659080Watermelon (Charleston Gray)cuwcgB038
Csa1G659080Watermelon (97103) v1cuwmB011
Csa1G659080Cucurbita pepo (Zucchini)cpecuB000
Csa1G659080Cucurbita pepo (Zucchini)cpecuB349
Csa1G659080Bottle gourd (USVL1VR-Ls)culsiB058
Csa1G659080Bottle gourd (USVL1VR-Ls)culsiB082
Csa1G659080Cucumber (Gy14) v2cgybcuB002
Csa1G659080Melon (DHL92) v3.6.1cumedB035
Csa1G659080Silver-seed gourdcarcuB0982