Csa1G542470 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G542470
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Receptor-like protein kinase
Location	Chr1 : 20077604 .. 20077936 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGTTGATGTATCAGATATCTACAAATTCGGCGTGCTCTTGTTTGAAATGATAGTGAATCCGCAGCTGCGGGATGAGATCAAGCAAGGCGAATCTGATTTTGTTGGATACATAAAAATGCAACTTCCCAACAATTTGCAAGCAGTGATCAACGAAGATATAAAGCTACAAAGAGAGAGCATGGTGAATCAGGCTAAAGCAGCAATAAACCTGGCACTGATGTGTACAGATCAATCAAGTGGGCATCAGCCAAATTTGAAATACATATTTGACAATGTAACTAGATTATTAAGTAATCACAAGATGCATGATACTGAGGAAGGAAGGTAG

mRNA sequence

ATGGCAGTTGATGTATCAGATATCTACAAATTCGGCGTGCTCTTGTTTGAAATGATAGTGAATCCGCAGCTGCGGGATGAGATCAAGCAAGGCGAATCTGATTTTGTTGGATACATAAAAATGCAACTTCCCAACAATTTGCAAGCAGTGATCAACGAAGATATAAAGCTACAAAGAGAGAGCATGGTGAATCAGGCTAAAGCAGCAATAAACCTGGCACTGATGTGTACAGATCAATCAAGTGGGCATCAGCCAAATTTGAAATACATATTTGACAATGTAACTAGATTATTAAGTAATCACAAGATGCATGATACTGAGGAAGGAAGGTAG

Coding sequence (CDS)

ATGGCAGTTGATGTATCAGATATCTACAAATTCGGCGTGCTCTTGTTTGAAATGATAGTGAATCCGCAGCTGCGGGATGAGATCAAGCAAGGCGAATCTGATTTTGTTGGATACATAAAAATGCAACTTCCCAACAATTTGCAAGCAGTGATCAACGAAGATATAAAGCTACAAAGAGAGAGCATGGTGAATCAGGCTAAAGCAGCAATAAACCTGGCACTGATGTGTACAGATCAATCAAGTGGGCATCAGCCAAATTTGAAATACATATTTGACAATGTAACTAGATTATTAAGTAATCACAAGATGCATGATACTGAGGAAGGAAGGTAG

Protein sequence

MAVDVSDIYKFGVLLFEMIVNPQLRDEIKQGESDFVGYIKMQLPNNLQAVINEDIKLQRESMVNQAKAAINLALMCTDQSSGHQPNLKYIFDNVTRLLSNHKMHDTEEGR*

Homology

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BLAST of Csa1G542470 vs. TrEMBL
Match: A0A0A0M186_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G542470 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 6.8e-55
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 1


Query: 1   MAVDVSDIYKFGVLLFEMIVNPQLRDEIKQGESDFVGYIKMQLPNNLQAVINEDIKLQRE 60
           MAVDVSDIYKFGVLLFEMIVNPQLRDEIKQGESDFVGYIKMQLPNNLQAVINEDIKLQRE
Sbjct: 1   MAVDVSDIYKFGVLLFEMIVNPQLRDEIKQGESDFVGYIKMQLPNNLQAVINEDIKLQRE 60

Query: 61  SMVNQAKAAINLALMCTDQSSGHQPNLKYIFDNVTRLLSNHKMHDTEEGR 111
           SMVNQAKAAINLALMCTDQSSGHQPNLKYIFDNVTRLLSNHKMHDTEEGR
Sbjct: 61  SMVNQAKAAINLALMCTDQSSGHQPNLKYIFDNVTRLLSNHKMHDTEEGR 110

[Close]

BLAST of Csa1G542470 vs. TrEMBL
Match: B9T6A3_RICCO (ATP binding protein, putative OS=Ricinus communis GN=RCOM_0140310 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 5.3e-15
Identity = 42/94 (44.68%), Postives = 64/94 (68.09%), Query Frame = 1


Query: 4   DVSDIYKFGVLLFEMIVNPQLRDEIKQGESDFVGYIKMQLPNNLQAVINEDIKLQRESMV 63
           +  +IYK+G+ L EMI N + +++ + GE+ F+GYI+M  P NL+ VI+  +KL  E+M+
Sbjct: 411 NTKNIYKYGIFLLEMITNKRPQEDFETGEAGFIGYIRMSYPENLRKVIDARMKLS-ENMI 470

Query: 64  NQAKAAINLALMCTDQSSGHQPNLKYIFDNVTRL 98
           +QAK  I L LMCTDQS+   P+L  IF  + R+
Sbjct: 471 DQAKHGIGLGLMCTDQSTSKYPSLNQIFSMLARV 503

[Close]

BLAST of Csa1G542470 vs. TrEMBL
Match: M5WWH7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa017883mg PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.5e-14
Identity = 47/111 (42.34%), Postives = 70/111 (63.06%), Query Frame = 1


Query: 8   IYKFGVLLFEMIVNPQLRDEIKQGESDFVGYIKMQLPNNLQAVINEDIKLQRESMVNQAK 67
           +YKFGVLL EM+VN +  +E ++GE+ F+ YI+M  P NLQ VI++ ++L + +  +QAK
Sbjct: 390 MYKFGVLLLEMLVNRRPEEEFERGEAGFIEYIRMHYPGNLQKVIDQKMELTQNTF-DQAK 449

Query: 68  AAINLALMCTDQSSGHQPNLKYIFDNVTRLLS--------NHKMHDTEEGR 111
            AI L LMCTD SS  Q +L  +FD ++R           NH+   +E G+
Sbjct: 450 QAIGLGLMCTDASSNQQVSLGQVFDIMSRAYQSCRVLASHNHERLHSERGK 499

[Close]

BLAST of Csa1G542470 vs. TrEMBL
Match: V4UID1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017495mg PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.7e-13
Identity = 42/103 (40.78%), Postives = 66/103 (64.08%), Query Frame = 1


Query: 8   IYKFGVLLFEMIVNPQLRDEIKQGESDFVGYIKMQLPNNLQAVINEDIKLQRESMVNQAK 67
           +YKFG+ L EMI N +  +E ++GE+ F+ YI+M  P NLQ V++E + L  E+M +QA+
Sbjct: 474 VYKFGLFLLEMITNRRPLEEFERGEAGFIEYIRMHYPENLQLVVDERMML-TENMFDQAE 533

Query: 68  AAINLALMCTDQSSGHQPNLKYIFDNVTRLLSNHKMHDTEEGR 111
             + L LMCTDQ +G  P+L  I++ +TR   +  +  +E  R
Sbjct: 534 QGLGLGLMCTDQPTGKLPSLVQIYNMITRAYESCPILTSENHR 575

[Close]

BLAST of Csa1G542470 vs. TrEMBL
Match: A0A067GD24_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g045127mg PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.7e-13
Identity = 42/103 (40.78%), Postives = 66/103 (64.08%), Query Frame = 1


Query: 8   IYKFGVLLFEMIVNPQLRDEIKQGESDFVGYIKMQLPNNLQAVINEDIKLQRESMVNQAK 67
           +YKFG+ L EMI N +  +E ++GE+ F+ YI+M  P NLQ V++E + L  E+M +QA+
Sbjct: 391 VYKFGLFLLEMITNRRPLEEFERGEAGFIEYIRMHYPENLQLVVDERMML-TENMFDQAE 450

Query: 68  AAINLALMCTDQSSGHQPNLKYIFDNVTRLLSNHKMHDTEEGR 111
             + L LMCTDQ +G  P+L  I++ +TR   +  +  +E  R
Sbjct: 451 QGLGLGLMCTDQPTGKLPSLVQIYNMITRAYKSCPILTSENHR 492

[Close]

BLAST of Csa1G542470 vs. TAIR10
Match: AT4G20790.1 (AT4G20790.1 Leucine-rich repeat protein kinase family protein)

HSP 1 Score: 62.0 bits (149), Expect = 2.7e-10
Identity = 38/102 (37.25%), Postives = 60/102 (58.82%), Query Frame = 1


Query: 6   SDIYKFGVLLFEMIVNPQLRDEIKQGESD--FVGYIKMQLPNNLQAVINEDIKLQRESMV 65
           ++I+ FG+   EMI N  LR ++ Q +S+  ++ YI++  P+NL+ VI+E +K++  +  
Sbjct: 419 TNIFNFGLFFVEMITN--LRPDLGQEDSERRYLEYIRVHYPDNLERVIDEKMKIEGRTF- 478

Query: 66  NQAKAAINLALMCTDQSSG-HQPNLKYIFDNVTRLLSNHKMH 105
           +Q K AI L LMCTD      QP+L  I+D V+ L  +   H
Sbjct: 479 DQVKQAITLGLMCTDIIPPLKQPSLTQIYDLVSSLYESSSRH 517

[Close]

BLAST of Csa1G542470 vs. TAIR10
Match: AT1G16120.1 (AT1G16120.1 wall associated kinase-like 1)

HSP 1 Score: 48.5 bits (114), Expect = 3.1e-06
Identity = 28/97 (28.87%), Postives = 50/97 (51.55%), Query Frame = 1


Query: 6   SDIYKFGVLLFEMIVN--PQLRDEIKQGESDFVGYIKMQLPNNLQAVINEDIKLQRESMV 65
           SD+Y FGV+L E+I    P  R   ++G      +++    N +  +I  DI+++ ES +
Sbjct: 611 SDVYSFGVVLVELITGEKPLSRVRSEEGRGLATHFLEAMKENRVIDII--DIRIKDESKL 670

Query: 66  NQAKAAINLALMCTDQSSGHQPNLKYIFDNVTRLLSN 101
            Q  A   LA  C ++   ++PN+K + + + R+ S+
Sbjct: 671 EQVMAVAKLARKCLNRKGKNRPNMKEVSNELERIRSS 705

[Close]

BLAST of Csa1G542470 vs. TAIR10
Match: AT1G51910.1 (AT1G51910.1 Leucine-rich repeat protein kinase family protein)

HSP 1 Score: 48.1 bits (113), Expect = 4.0e-06
Identity = 28/87 (32.18%), Postives = 49/87 (56.32%), Query Frame = 1


Query: 6   SDIYKFGVLLFEMIVNPQLRDEIKQGE--SDFVGYIKMQLPNNLQAVINEDIKLQRESMV 65
           +D+Y FGV+L E+I N  + D  ++    +D+VG+  M+   +++ +I  D KL +E   
Sbjct: 753 TDVYSFGVVLLEIITNQPVIDTTREKAHITDWVGFKLME--GDIRNII--DPKLIKEFDT 812

Query: 66  NQAKAAINLALMCTDQSSGHQPNLKYI 91
           N    A+ LAL C + +S H+P + ++
Sbjct: 813 NGVWKAVELALSCVNPTSNHRPTMPHV 835

[Close]

BLAST of Csa1G542470 vs. NCBI nr
Match: gi|700210860|gb|KGN65956.1| (hypothetical protein Csa_1G542470 [Cucumis sativus])

HSP 1 Score: 221.1 bits (562), Expect = 9.7e-55
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 1


Query: 1   MAVDVSDIYKFGVLLFEMIVNPQLRDEIKQGESDFVGYIKMQLPNNLQAVINEDIKLQRE 60
           MAVDVSDIYKFGVLLFEMIVNPQLRDEIKQGESDFVGYIKMQLPNNLQAVINEDIKLQRE
Sbjct: 1   MAVDVSDIYKFGVLLFEMIVNPQLRDEIKQGESDFVGYIKMQLPNNLQAVINEDIKLQRE 60

Query: 61  SMVNQAKAAINLALMCTDQSSGHQPNLKYIFDNVTRLLSNHKMHDTEEGR 111
           SMVNQAKAAINLALMCTDQSSGHQPNLKYIFDNVTRLLSNHKMHDTEEGR
Sbjct: 61  SMVNQAKAAINLALMCTDQSSGHQPNLKYIFDNVTRLLSNHKMHDTEEGR 110

[Close]

BLAST of Csa1G542470 vs. NCBI nr
Match: gi|449435930|ref|XP_004135747.1| (PREDICTED: probable LRR receptor-like protein kinase At1g51890 [Cucumis sativus])

HSP 1 Score: 208.8 bits (530), Expect = 5.0e-51
Identity = 103/104 (99.04%), Postives = 104/104 (100.00%), Query Frame = 1


Query: 7   DIYKFGVLLFEMIVNPQLRDEIKQGESDFVGYIKMQLPNNLQAVINEDIKLQRESMVNQA 66
           +IYKFGVLLFEMIVNPQLRDEIKQGESDFVGYIKMQLPNNLQAVINEDIKLQRESMVNQA
Sbjct: 416 NIYKFGVLLFEMIVNPQLRDEIKQGESDFVGYIKMQLPNNLQAVINEDIKLQRESMVNQA 475

Query: 67  KAAINLALMCTDQSSGHQPNLKYIFDNVTRLLSNHKMHDTEEGR 111
           KAAINLALMCTDQSSGHQPNLKYIFDNVTRLLSNHKMHDTEEGR
Sbjct: 476 KAAINLALMCTDQSSGHQPNLKYIFDNVTRLLSNHKMHDTEEGR 519

[Close]

BLAST of Csa1G542470 vs. NCBI nr
Match: gi|659068725|ref|XP_008445843.1| (PREDICTED: probable LRR receptor-like protein kinase At1g51890 [Cucumis melo])

HSP 1 Score: 200.7 bits (509), Expect = 1.4e-48
Identity = 98/105 (93.33%), Postives = 102/105 (97.14%), Query Frame = 1


Query: 6   SDIYKFGVLLFEMIVNPQLRDEIKQGESDFVGYIKMQLPNNLQAVINEDIKLQRESMVNQ 65
           ++IYKFGVLL EMIVNPQLRDEIKQGESDFVGYIKMQLPNNLQAVINEDI+LQRESMVNQ
Sbjct: 400 NNIYKFGVLLLEMIVNPQLRDEIKQGESDFVGYIKMQLPNNLQAVINEDIELQRESMVNQ 459

Query: 66  AKAAINLALMCTDQSSGHQPNLKYIFDNVTRLLSNHKMHDTEEGR 111
            KAAINLALMCTDQSSGHQPNLKYIFDNVTR LSNHKMH+TEEGR
Sbjct: 460 GKAAINLALMCTDQSSGHQPNLKYIFDNVTRFLSNHKMHETEEGR 504

[Close]

BLAST of Csa1G542470 vs. NCBI nr
Match: gi|255586235|ref|XP_002533772.1| (PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g34110 [Ricinus communis])

HSP 1 Score: 88.6 bits (218), Expect = 7.5e-15
Identity = 42/94 (44.68%), Postives = 64/94 (68.09%), Query Frame = 1


Query: 4   DVSDIYKFGVLLFEMIVNPQLRDEIKQGESDFVGYIKMQLPNNLQAVINEDIKLQRESMV 63
           +  +IYK+G+ L EMI N + +++ + GE+ F+GYI+M  P NL+ VI+  +KL  E+M+
Sbjct: 411 NTKNIYKYGIFLLEMITNKRPQEDFETGEAGFIGYIRMSYPENLRKVIDARMKLS-ENMI 470

Query: 64  NQAKAAINLALMCTDQSSGHQPNLKYIFDNVTRL 98
           +QAK  I L LMCTDQS+   P+L  IF  + R+
Sbjct: 471 DQAKHGIGLGLMCTDQSTSKYPSLNQIFSMLARV 503

[Close]

BLAST of Csa1G542470 vs. NCBI nr
Match: gi|595881958|ref|XP_007212519.1| (hypothetical protein PRUPE_ppa017883mg [Prunus persica])

HSP 1 Score: 87.0 bits (214), Expect = 2.2e-14
Identity = 47/111 (42.34%), Postives = 70/111 (63.06%), Query Frame = 1


Query: 8   IYKFGVLLFEMIVNPQLRDEIKQGESDFVGYIKMQLPNNLQAVINEDIKLQRESMVNQAK 67
           +YKFGVLL EM+VN +  +E ++GE+ F+ YI+M  P NLQ VI++ ++L + +  +QAK
Sbjct: 390 MYKFGVLLLEMLVNRRPEEEFERGEAGFIEYIRMHYPGNLQKVIDQKMELTQNTF-DQAK 449

Query: 68  AAINLALMCTDQSSGHQPNLKYIFDNVTRLLS--------NHKMHDTEEGR 111
            AI L LMCTD SS  Q +L  +FD ++R           NH+   +E G+
Sbjct: 450 QAIGLGLMCTDASSNQQVSLGQVFDIMSRAYQSCRVLASHNHERLHSERGK 499

The following BLAST results are available for this feature:

BLAST of Csa1G542470 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M186_CUCSA	6.8e-55	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G542470 PE=4 SV=1	[more]
B9T6A3_RICCO	5.3e-15	44.68	ATP binding protein, putative OS=Ricinus communis GN=RCOM_0140310 PE=4 SV=1	[more]
M5WWH7_PRUPE	1.5e-14	42.34	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa017883mg PE=4 SV=1	[more]
V4UID1_9ROSI	1.7e-13	40.78	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017495mg PE=4 SV=1	[more]
A0A067GD24_CITSI	1.7e-13	40.78	Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g045127mg PE=4 S...	[more]

BLAST of Csa1G542470 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G20790.1	2.7e-10	37.25	Leucine-rich repeat protein kinase family protein	[more]
AT1G16120.1	3.1e-06	28.87	wall associated kinase-like 1	[more]
AT1G51910.1	4.0e-06	32.18	Leucine-rich repeat protein kinase family protein	[more]

BLAST of Csa1G542470 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700210860\|gb\|KGN65956.1\|	9.7e-55	100.00	hypothetical protein Csa_1G542470 [Cucumis sativus]	[more]
gi\|449435930\|ref\|XP_004135747.1\|	5.0e-51	99.04	PREDICTED: probable LRR receptor-like protein kinase At1g51890 [Cucumis sativus]	[more]
gi\|659068725\|ref\|XP_008445843.1\|	1.4e-48	93.33	PREDICTED: probable LRR receptor-like protein kinase At1g51890 [Cucumis melo]	[more]
gi\|255586235\|ref\|XP_002533772.1\|	7.5e-15	44.68	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g34110 ...	[more]
gi\|595881958\|ref\|XP_007212519.1\|	2.2e-14	42.34	hypothetical protein PRUPE_ppa017883mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa1G542470.1	Csa1G542470.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR27000	FAMILY NOT NAMED	coord: 6..94 score: 2.0
None	No IPR available	PANTHER	PTHR27000:SF222	LEUCINE-RICH REPEAT PROTEIN KINASE	coord: 6..94 score: 2.0

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa1G542470	Wax gourd	cuwgoB053
Csa1G542470	Cucumber (Gy14) v1	cgycuB255
Csa1G542470	Cucurbita maxima (Rimu)	cmacuB220
Csa1G542470	Cucurbita maxima (Rimu)	cmacuB392
Csa1G542470	Cucurbita moschata (Rifu)	cmocuB205
Csa1G542470	Cucurbita moschata (Rifu)	cmocuB381
Csa1G542470	Melon (DHL92) v3.5.1	cumeB031
Csa1G542470	Watermelon (Charleston Gray)	cuwcgB042
Csa1G542470	Watermelon (97103) v1	cuwmB014
Csa1G542470	Cucurbita pepo (Zucchini)	cpecuB030
Csa1G542470	Cucurbita pepo (Zucchini)	cpecuB508
Csa1G542470	Bottle gourd (USVL1VR-Ls)	culsiB023
Csa1G542470	Cucumber (Gy14) v2	cgybcuB002
Csa1G542470	Melon (DHL92) v3.6.1	cumedB027
Csa1G542470	Silver-seed gourd	carcuB0480
Csa1G542470	Silver-seed gourd	carcuB0426
Csa1G542470	Watermelon (97103) v2	cuwmbB039