Cla005715 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla005715
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Ty3-gypsy retrotransposon protein (AHRD V1 ***- E5GCP6_CUCME)
Location	Chr10 : 8315280 .. 8315609 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTCCAAGAAAGTTGCATCTAAAACTTCTACTGCAAGCAACGCCTACACAGAACCCATCATCTACAGTCGCTCAAAGGGGGTCATGCAGGAGGAGGAACAAAGTTCTGTCATCGTAGAGAACATCTGGAGGCGGTTGACTGAATCTTCTAAAGGAAGGATTATCATAAAAGAAAATCCTTTATTTGACAGCTCTGCTCTCGCTTCTAACCGAACCAAGAAAGAATCATGCCCTAATATGATGTTTGTCATGATGGTTGATGTAACGGCAGAGGCAGCCATGTCAAAAATGGAGAAGAAAATAAACCTCCTAATGAAAGTTGTTTGA

mRNA sequence

ATGGCCTCCAAGAAAGTTGCATCTAAAACTTCTACTGCAAGCAACGCCTACACAGAACCCATCATCTACAGTCGCTCAAAGGGGGTCATGCAGGAGGAGGAACAAAGTTCTGTCATCGTAGAGAACATCTGGAGGCGGTTGACTGAATCTTCTAAAGGAAGGATTATCATAAAAGAAAATCCTTTATTTGACAGCTCTGCTCTCGCTTCTAACCGAACCAAGAAAGAATCATGCCCTAATATGATGTTTGTCATGATGGTTGATGTAACGGCAGAGGCAGCCATGTCAAAAATGGAGAAGAAAATAAACCTCCTAATGAAAGTTGTTTGA

Coding sequence (CDS)

ATGGCCTCCAAGAAAGTTGCATCTAAAACTTCTACTGCAAGCAACGCCTACACAGAACCCATCATCTACAGTCGCTCAAAGGGGGTCATGCAGGAGGAGGAACAAAGTTCTGTCATCGTAGAGAACATCTGGAGGCGGTTGACTGAATCTTCTAAAGGAAGGATTATCATAAAAGAAAATCCTTTATTTGACAGCTCTGCTCTCGCTTCTAACCGAACCAAGAAAGAATCATGCCCTAATATGATGTTTGTCATGATGGTTGATGTAACGGCAGAGGCAGCCATGTCAAAAATGGAGAAGAAAATAAACCTCCTAATGAAAGTTGTTTGA

Protein sequence

MASKKVASKTSTASNAYTEPIIYSRSKGVMQEEEQSSVIVENIWRRLTESSKGRIIIKENPLFDSSALASNRTKKESCPNMMFVMMVDVTAEAAMSKMEKKINLLMKVV

Homology

[Close]

BLAST of Cla005715 vs. TrEMBL
Match: E5GCM2_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.6e-19
Identity = 57/109 (52.29%), Postives = 73/109 (66.97%), Query Frame = 1


Query: 1   MASKKVASKTSTASNAYTEPIIYSRSKGVMQEEEQSSVIVENIWRRLTESSKGRIIIKEN 60
           MA  KVASK    ++ YT  I+ S SK   Q++EQ+SV+ +  W +L ES K  IIIKEN
Sbjct: 1   MALMKVASKAIIINDTYTRLIVQSHSKRSTQKQEQNSVLAKKSWEQLMESPKCGIIIKEN 60

Query: 61  PLFDSSALASNRTKKESCPNMMFVMMVDVTAEAAMSKMEKKINLLMKVV 110
           PLF+ S  ASN ++KES   ++ +MM DVT EA M +ME KIN LMKVV
Sbjct: 61  PLFEDSTPASNLSEKESHLEVVSIMMADVTVEAVMVEMEMKINFLMKVV 109

[Close]

BLAST of Cla005715 vs. TrEMBL
Match: E5GCE3_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 5.9e-19
Identity = 55/109 (50.46%), Postives = 75/109 (68.81%), Query Frame = 1


Query: 1   MASKKVASKTSTASNAYTEPIIYSRSKGVMQEEEQSSVIVENIWRRLTESSKGRIIIKEN 60
           MA +KVASK +  +++YT  +  S SK  +QE+EQSSV+ +  W +L ES KG I I+EN
Sbjct: 1   MAPRKVASKATVTNDSYTGLVTQSHSKRSIQEQEQSSVLKKKSWEQLIESPKGGINIREN 60

Query: 61  PLFDSSALASNRTKKESCPNMMFVMMVDVTAEAAMSKMEKKINLLMKVV 110
           PLF++S  ASN + KES   ++ V+M  VTAE  M +ME+KIN LMK V
Sbjct: 61  PLFNNSTPASNLSDKESHLEVVSVIMAAVTAETTMVEMERKINFLMKAV 109

[Close]

BLAST of Cla005715 vs. TrEMBL
Match: E5GCP6_CUCME (Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 3.2e-17
Identity = 55/111 (49.55%), Postives = 76/111 (68.47%), Query Frame = 1


Query: 1   MASKKVASKTSTASNAYTEPIIYSRSKGVMQEEEQSS--VIVENIWRRLTESSKGRIIIK 60
           MA+ K ASK+S AS++Y   +  S  K  MQE+EQ    V+ +    +L ES KG III+
Sbjct: 1   MATNKAASKSSVASDSYIGLVTQSHLKRSMQEQEQEQGFVLKKKSLEQLIESPKGGIIIR 60

Query: 61  ENPLFDSSALASNRTKKESCPNMMFVMMVDVTAEAAMSKMEKKINLLMKVV 110
           +NPLF++S  ASN + K S   ++ VMMVDVTAEA +++ME+KIN LMKV+
Sbjct: 61  DNPLFNNSTPASNLSDKASHLEVVSVMMVDVTAEATVTEMERKINFLMKVI 111

[Close]

BLAST of Cla005715 vs. TrEMBL
Match: E5GB67_CUCME (Retrotransposon gag protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 7.5e-14
Identity = 45/80 (56.25%), Postives = 59/80 (73.75%), Query Frame = 1


Query: 30  MQEEEQSSVIVENIWRRLTESSKGRIIIKENPLFDSSALASNRTKKESCPNMMFVMMVDV 89
           MQE+EQ  V+ +    +L ES KG III++NPLF++S   SN + KES   ++ VMM+DV
Sbjct: 1   MQEQEQGFVLKKKSLEQLIESLKGGIIIRDNPLFNNSTPTSNLSDKESHLEVVSVMMIDV 60

Query: 90  TAEAAMSKMEKKINLLMKVV 110
           TAEA M++MEKKIN LMKVV
Sbjct: 61  TAEATMAEMEKKINFLMKVV 80

[Close]

BLAST of Cla005715 vs. TrEMBL
Match: E5GBB0_CUCME (Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 4.7e-08
Identity = 33/73 (45.21%), Postives = 52/73 (71.23%), Query Frame = 1


Query: 39  IVENIWRRLTESSKGRIIIKENPLFDS-SALASNRTKKESCPNMMFVMMVDV-TAEAAMS 98
           + +NIW ++++  KG IIIKENP  D  ++L+ +  ++   PN+M VM+ DV T+EA M 
Sbjct: 38  VAKNIWEQISKPPKGGIIIKENPAIDKHNSLSEHSNEEAPQPNIMSVMVTDVDTSEARMV 97

Query: 99  KMEKKINLLMKVV 110
           ++EKK+N+LMK V
Sbjct: 98  ELEKKVNMLMKAV 110

[Close]

BLAST of Cla005715 vs. NCBI nr
Match: gi|307136413|gb|ADN34221.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 103.6 bits (257), Expect = 2.2e-19
Identity = 57/109 (52.29%), Postives = 73/109 (66.97%), Query Frame = 1


Query: 1   MASKKVASKTSTASNAYTEPIIYSRSKGVMQEEEQSSVIVENIWRRLTESSKGRIIIKEN 60
           MA  KVASK    ++ YT  I+ S SK   Q++EQ+SV+ +  W +L ES K  IIIKEN
Sbjct: 1   MALMKVASKAIIINDTYTRLIVQSHSKRSTQKQEQNSVLAKKSWEQLMESPKCGIIIKEN 60

Query: 61  PLFDSSALASNRTKKESCPNMMFVMMVDVTAEAAMSKMEKKINLLMKVV 110
           PLF+ S  ASN ++KES   ++ +MM DVT EA M +ME KIN LMKVV
Sbjct: 61  PLFEDSTPASNLSEKESHLEVVSIMMADVTVEAVMVEMEMKINFLMKVV 109

[Close]

BLAST of Cla005715 vs. NCBI nr
Match: gi|307136319|gb|ADN34142.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 101.7 bits (252), Expect = 8.5e-19
Identity = 55/109 (50.46%), Postives = 75/109 (68.81%), Query Frame = 1


Query: 1   MASKKVASKTSTASNAYTEPIIYSRSKGVMQEEEQSSVIVENIWRRLTESSKGRIIIKEN 60
           MA +KVASK +  +++YT  +  S SK  +QE+EQSSV+ +  W +L ES KG I I+EN
Sbjct: 1   MAPRKVASKATVTNDSYTGLVTQSHSKRSIQEQEQSSVLKKKSWEQLIESPKGGINIREN 60

Query: 61  PLFDSSALASNRTKKESCPNMMFVMMVDVTAEAAMSKMEKKINLLMKVV 110
           PLF++S  ASN + KES   ++ V+M  VTAE  M +ME+KIN LMK V
Sbjct: 61  PLFNNSTPASNLSDKESHLEVVSVIMAAVTAETTMVEMERKINFLMKAV 109

[Close]

BLAST of Cla005715 vs. NCBI nr
Match: gi|659113191|ref|XP_008456446.1| (PREDICTED: uncharacterized protein LOC103496389 [Cucumis melo])

HSP 1 Score: 100.9 bits (250), Expect = 1.4e-18
Identity = 50/90 (55.56%), Postives = 72/90 (80.00%), Query Frame = 1


Query: 1  MASKKVASKTSTASNAYTEPIIYSRSKGVMQEEEQSSVIVENIWRRLTESSKGRIIIKEN 60
          MASKKVAS +  AS+AYT PI  SRSKG++QE++Q S +V++I ++L ES K  I+IK+N
Sbjct: 1  MASKKVASNSYVASDAYTGPITRSRSKGIIQEQDQDSNVVQSILKQLMESPKAGIVIKKN 60

Query: 61 PLFDSSALASNRTKKESCPNMMFVMMVDVT 91
          PL+D+S LAS+ +KK++ P++M VMM D+T
Sbjct: 61 PLYDNSDLASSMSKKKAHPDVMSVMMADIT 90

[Close]

BLAST of Cla005715 vs. NCBI nr
Match: gi|307136441|gb|ADN34247.1| (ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 95.9 bits (237), Expect = 4.6e-17
Identity = 55/111 (49.55%), Postives = 76/111 (68.47%), Query Frame = 1


Query: 1   MASKKVASKTSTASNAYTEPIIYSRSKGVMQEEEQSS--VIVENIWRRLTESSKGRIIIK 60
           MA+ K ASK+S AS++Y   +  S  K  MQE+EQ    V+ +    +L ES KG III+
Sbjct: 1   MATNKAASKSSVASDSYIGLVTQSHLKRSMQEQEQEQGFVLKKKSLEQLIESPKGGIIIR 60

Query: 61  ENPLFDSSALASNRTKKESCPNMMFVMMVDVTAEAAMSKMEKKINLLMKVV 110
           +NPLF++S  ASN + K S   ++ VMMVDVTAEA +++ME+KIN LMKV+
Sbjct: 61  DNPLFNNSTPASNLSDKASHLEVVSVMMVDVTAEATVTEMERKINFLMKVI 111

[Close]

BLAST of Cla005715 vs. NCBI nr
Match: gi|307135838|gb|ADN33709.1| (retrotransposon gag protein [Cucumis melo subsp. melo])

HSP 1 Score: 84.7 bits (208), Expect = 1.1e-13
Identity = 45/80 (56.25%), Postives = 59/80 (73.75%), Query Frame = 1


Query: 30  MQEEEQSSVIVENIWRRLTESSKGRIIIKENPLFDSSALASNRTKKESCPNMMFVMMVDV 89
           MQE+EQ  V+ +    +L ES KG III++NPLF++S   SN + KES   ++ VMM+DV
Sbjct: 1   MQEQEQGFVLKKKSLEQLIESLKGGIIIRDNPLFNNSTPTSNLSDKESHLEVVSVMMIDV 60

Query: 90  TAEAAMSKMEKKINLLMKVV 110
           TAEA M++MEKKIN LMKVV
Sbjct: 61  TAEATMAEMEKKINFLMKVV 80

The following BLAST results are available for this feature:

BLAST of Cla005715 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GCM2_CUCME	1.6e-19	52.29	Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
E5GCE3_CUCME	5.9e-19	50.46	Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
E5GCP6_CUCME	3.2e-17	49.55	Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
E5GB67_CUCME	7.5e-14	56.25	Retrotransposon gag protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
E5GBB0_CUCME	4.7e-08	45.21	Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]

BLAST of Cla005715 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|307136413\|gb\|ADN34221.1\|	2.2e-19	52.29	hypothetical protein [Cucumis melo subsp. melo]	[more]
gi\|307136319\|gb\|ADN34142.1\|	8.5e-19	50.46	hypothetical protein [Cucumis melo subsp. melo]	[more]
gi\|659113191\|ref\|XP_008456446.1\|	1.4e-18	55.56	PREDICTED: uncharacterized protein LOC103496389 [Cucumis melo]	[more]
gi\|307136441\|gb\|ADN34247.1\|	4.6e-17	49.55	ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo]	[more]
gi\|307135838\|gb\|ADN33709.1\|	1.1e-13	56.25	retrotransposon gag protein [Cucumis melo subsp. melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla005715	Cla005715.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla005715	Bottle gourd (USVL1VR-Ls)	lsiwmB352
Cla005715	Cucumber (Gy14) v2	cgybwmB194
Cla005715	Melon (DHL92) v3.6.1	medwmB441
Cla005715	Cucumber (Chinese Long) v3	cucwmB215
Cla005715	Watermelon (97103) v2	wmwmbB055
Cla005715	Wax gourd	wgowmB017
Cla005715	Cucumber (Gy14) v1	cgywmB473
Cla005715	Wild cucumber (PI 183967)	cpiwmB206
Cla005715	Melon (DHL92) v3.5.1	mewmB451
Cla005715	Watermelon (Charleston Gray)	wcgwmB055
Cla005715	Cucumber (Chinese Long) v2	cuwmB206