Csa1G320870 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G320870
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 13766937 .. 13767619 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCCCATCTCCAATACATTGTAACCAGAGCATTTCCAACAAAAACATCACCTTTGAATCCACATTTCAGGGCAAGAGTATGCAACAGCCAACTAAAAAGAAAATTTTTTCCATCAAAACAAAAGGAAAATGCTGTAGAGTAAGTTACAGAATCAAACTCAACCCCATTTAAATTTATCCTCCGAGCAAAACTCAAAGCGTTCTCACTCTTCTCGAACCCGGAAAGAATCGTATTCCACGAAACAATATCTGGGTCATGTAAATTCTCGAATACACTAAAAGCCCTCTCAAGCAGCCCAGATTTACAGTACATATTCATCAAAGAGTTAGAGATGTAATATGGGAAACAAACCCAGAAGAAATAACAAATCCATGAATTTGTCTATCTAGTTTAGGAAGCCCGCAACAGGGTTTCAGAGCAAGAACCAAAGTGAACTCATCGGCATTACCATCAAGACCCCACTGAAAATAGTTCTTAAAAAAGTGAAGGGATTGAAATGCTCCTCTGGGCAAGTAATTGATCAAAACGCGGTTGAAAGGGGCTGGCATTTGGAGGAGGAGTTTGATGAAACAGGTTGTGGTCATGTTGAAACTTGGGAATCGTTGTTTGGATTTGACATGAAAGGATTTGAAATTCAGATGGCGGGTAAGCATGAGAAGGGCAGGAAAGTTGATGGTTGA

mRNA sequence

ATGTTCCCATCTCCAATACATTGTAACCAGAGCATTTCCAACAAAAACATCACCTTTGAATCCACATTTCAGGGCAAGACAAAACTCAAAGCGTTCTCACTCTTCTCGAACCCGGAAAGAATCGTATTCCACGAAACAATATCTGGGTCATGTAAATTCTCGAATACACTAAAAGCCCTCTCAAGCAGCCCAGATTTACAGAAGCCCGCAACAGGGTTTCAGAGCAAGAACCAAAGTGAACTCATCGGCATTACCATCAAGACCCCACTGAAAATAGTTCTTAAAAAAGTGAAGGGATTGAAATGCTCCTCTGGGCAAGTAATTGATCAAAACGCGGTTGAAAGGGGCTGGCATTTGGAGGAGGAGTTTGATGAAACAGGTTGTGGTCATGTTGAAACTTGGGAATCGTTGTTTGGATTTGACATGAAAGGATTTGAAATTCAGATGGCGGGTAAGCATGAGAAGGGCAGGAAAGTTGATGGTTGA

Coding sequence (CDS)

ATGTTCCCATCTCCAATACATTGTAACCAGAGCATTTCCAACAAAAACATCACCTTTGAATCCACATTTCAGGGCAAGACAAAACTCAAAGCGTTCTCACTCTTCTCGAACCCGGAAAGAATCGTATTCCACGAAACAATATCTGGGTCATGTAAATTCTCGAATACACTAAAAGCCCTCTCAAGCAGCCCAGATTTACAGAAGCCCGCAACAGGGTTTCAGAGCAAGAACCAAAGTGAACTCATCGGCATTACCATCAAGACCCCACTGAAAATAGTTCTTAAAAAAGTGAAGGGATTGAAATGCTCCTCTGGGCAAGTAATTGATCAAAACGCGGTTGAAAGGGGCTGGCATTTGGAGGAGGAGTTTGATGAAACAGGTTGTGGTCATGTTGAAACTTGGGAATCGTTGTTTGGATTTGACATGAAAGGATTTGAAATTCAGATGGCGGGTAAGCATGAGAAGGGCAGGAAAGTTGATGGTTGA

Protein sequence

MFPSPIHCNQSISNKNITFESTFQGKTKLKAFSLFSNPERIVFHETISGSCKFSNTLKALSSSPDLQKPATGFQSKNQSELIGITIKTPLKIVLKKVKGLKCSSGQVIDQNAVERGWHLEEEFDETGCGHVETWESLFGFDMKGFEIQMAGKHEKGRKVDG*
Homology
[Close]
BLAST of Csa1G320870 vs. TrEMBL
Match: A0A0A0LTR7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G320870 PE=4 SV=1)

HSP 1 Score: 330.9 bits (847), Expect = 8.9e-88
Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 1 

Query: 1   MFPSPIHCNQSISNKNITFESTFQGKTKLKAFSLFSNPERIVFHETISGSCKFSNTLKAL 60
           MFPSPIHCNQSISNKNITFESTFQGKTKLKAFSLFSNPERIVFHETISGSCKFSNTLKAL
Sbjct: 1   MFPSPIHCNQSISNKNITFESTFQGKTKLKAFSLFSNPERIVFHETISGSCKFSNTLKAL 60

Query: 61  SSSPDLQKPATGFQSKNQSELIGITIKTPLKIVLKKVKGLKCSSGQVIDQNAVERGWHLE 120
           SSSPDLQKPATGFQSKNQSELIGITIKTPLKIVLKKVKGLKCSSGQVIDQNAVERGWHLE
Sbjct: 61  SSSPDLQKPATGFQSKNQSELIGITIKTPLKIVLKKVKGLKCSSGQVIDQNAVERGWHLE 120

Query: 121 EEFDETGCGHVETWESLFGFDMKGFEIQMAGKHEKGRKVDG 162
           EEFDETGCGHVETWESLFGFDMKGFEIQMAGKHEKGRKVDG
Sbjct: 121 EEFDETGCGHVETWESLFGFDMKGFEIQMAGKHEKGRKVDG 161

[Close]
BLAST of Csa1G320870 vs. NCBI nr
Match: gi|700210224|gb|KGN65320.1| (hypothetical protein Csa_1G320870 [Cucumis sativus])

HSP 1 Score: 330.9 bits (847), Expect = 1.3e-87
Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 1 

Query: 1   MFPSPIHCNQSISNKNITFESTFQGKTKLKAFSLFSNPERIVFHETISGSCKFSNTLKAL 60
           MFPSPIHCNQSISNKNITFESTFQGKTKLKAFSLFSNPERIVFHETISGSCKFSNTLKAL
Sbjct: 1   MFPSPIHCNQSISNKNITFESTFQGKTKLKAFSLFSNPERIVFHETISGSCKFSNTLKAL 60

Query: 61  SSSPDLQKPATGFQSKNQSELIGITIKTPLKIVLKKVKGLKCSSGQVIDQNAVERGWHLE 120
           SSSPDLQKPATGFQSKNQSELIGITIKTPLKIVLKKVKGLKCSSGQVIDQNAVERGWHLE
Sbjct: 61  SSSPDLQKPATGFQSKNQSELIGITIKTPLKIVLKKVKGLKCSSGQVIDQNAVERGWHLE 120

Query: 121 EEFDETGCGHVETWESLFGFDMKGFEIQMAGKHEKGRKVDG 162
           EEFDETGCGHVETWESLFGFDMKGFEIQMAGKHEKGRKVDG
Sbjct: 121 EEFDETGCGHVETWESLFGFDMKGFEIQMAGKHEKGRKVDG 161

The following BLAST results are available for this feature:
BLAST of Csa1G320870 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LTR7_CUCSA8.9e-88100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G320870 PE=4 SV=1[more]
BLAST of Csa1G320870 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700210224|gb|KGN65320.1|1.3e-87100.00hypothetical protein Csa_1G320870 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G320870.1Csa1G320870.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa1G320870CmoCh11G005790Cucurbita moschata (Rifu)cmocuB079
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G320870Wax gourdcuwgoB001
Csa1G320870Wax gourdcuwgoB100
Csa1G320870Cucumber (Chinese Long) v2cucuB005
Csa1G320870Cucumber (Gy14) v1cgycuB182
Csa1G320870Cucumber (Gy14) v1cgycuB420
Csa1G320870Cucurbita maxima (Rimu)cmacuB062
Csa1G320870Cucurbita maxima (Rimu)cmacuB089
Csa1G320870Cucurbita maxima (Rimu)cmacuB111
Csa1G320870Cucurbita maxima (Rimu)cmacuB782
Csa1G320870Cucurbita moschata (Rifu)cmocuB051
Csa1G320870Cucurbita moschata (Rifu)cmocuB097
Csa1G320870Cucurbita moschata (Rifu)cmocuB776
Csa1G320870Melon (DHL92) v3.5.1cumeB061
Csa1G320870Melon (DHL92) v3.5.1cumeB076
Csa1G320870Watermelon (Charleston Gray)cuwcgB007
Csa1G320870Watermelon (Charleston Gray)cuwcgB069
Csa1G320870Watermelon (97103) v1cuwmB077
Csa1G320870Watermelon (97103) v1cuwmB081
Csa1G320870Cucurbita pepo (Zucchini)cpecuB095
Csa1G320870Cucurbita pepo (Zucchini)cpecuB354
Csa1G320870Cucurbita pepo (Zucchini)cpecuB644
Csa1G320870Cucurbita pepo (Zucchini)cpecuB658
Csa1G320870Bottle gourd (USVL1VR-Ls)culsiB008
Csa1G320870Bottle gourd (USVL1VR-Ls)culsiB060
Csa1G320870Cucumber (Gy14) v2cgybcuB002
Csa1G320870Cucumber (Gy14) v2cgybcuB051
Csa1G320870Melon (DHL92) v3.6.1cumedB051
Csa1G320870Melon (DHL92) v3.6.1cumedB069
Csa1G320870Silver-seed gourdcarcuB0034
Csa1G320870Silver-seed gourdcarcuB0040
Csa1G320870Silver-seed gourdcarcuB0135
Csa1G320870Silver-seed gourdcarcuB0595
Csa1G320870Watermelon (97103) v2cuwmbB019
Csa1G320870Watermelon (97103) v2cuwmbB067