MELO3C013144 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C013144
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Ty3/gypsy retrotransposon protein
Location	chr1 : 12388004 .. 12388237 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAAGGAAGCAGATCTTCGCCGCCATGAAACGAAGTTCAAAGTGGGAGACGGAGTTTATTTGAAATTACAACCGTACCGACAGCGATCCTCAGCTAGAAAACGTTGTGAGAAGCTAGCTCCAAAGTTTTATGGGCCTTATCGCATAATAGAAGAGATTGGGGAAGTAGCTTATCATATGGACCTCCCACCTGAGGCAATGATCCATACGTGTTTCATATTTCACAGCTGA

mRNA sequence

ATGAAGAAGGAAGCAGATCTTCGCCGCCATGAAACGAAGTTCAAAGTGGGAGACGGAGTTTATTTGAAATTACAACCGTACCGACAGCGATCCTCAGCTAGAAAACGTTGTGAGAAGCTAGCTCCAAAGTTTTATGGGCCTTATCGCATAATAGAAGAGATTGGGGAAGTAGCTTATCATATGGACCTCCCACCTGAGGCAATGATCCATACGTGTTTCATATTTCACAGCTGA

Coding sequence (CDS)

ATGAAGAAGGAAGCAGATCTTCGCCGCCATGAAACGAAGTTCAAAGTGGGAGACGGAGTTTATTTGAAATTACAACCGTACCGACAGCGATCCTCAGCTAGAAAACGTTGTGAGAAGCTAGCTCCAAAGTTTTATGGGCCTTATCGCATAATAGAAGAGATTGGGGAAGTAGCTTATCATATGGACCTCCCACCTGAGGCAATGATCCATACGTGTTTCATATTTCACAGCTGA

Protein sequence

MKKEADLRRHETKFKVGDGVYLKLQPYRQRSSARKRCEKLAPKFYGPYRIIEEIGEVAYHMDLPPEAMIHTCFIFHS*

Homology

[Close]

BLAST of MELO3C013144 vs. TrEMBL
Match: A5X2T1_9ERIC (Polyprotein (Fragment) OS=Primula vulgaris PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.1e-16
Identity = 43/73 (58.90%), Postives = 57/73 (78.08%), Query Frame = 1


Query: 1   MKKEADLRRHETKFKVGDGVYLKLQPYRQRSSARKRCEKLAPKFYGPYRIIEEIGEVAYH 60
           MK+ ADL R +  +KVGD VYLKLQPYRQ+S  R+R +KLAP+F+GPY+I E++G VAY 
Sbjct: 260 MKQNADLNRVDKCYKVGDYVYLKLQPYRQQSVIRRRNQKLAPRFFGPYKITEKVGAVAYK 319

Query: 61  MDLPPEAMIHTCF 74
           ++LPP + IH  F
Sbjct: 320 LELPPTSGIHPVF 332

[Close]

BLAST of MELO3C013144 vs. TrEMBL
Match: A5X2S4_9ERIC (Polyprotein OS=Primula vulgaris PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.1e-16
Identity = 43/73 (58.90%), Postives = 57/73 (78.08%), Query Frame = 1


Query: 1    MKKEADLRRHETKFKVGDGVYLKLQPYRQRSSARKRCEKLAPKFYGPYRIIEEIGEVAYH 60
            MK+ ADL R +  +KVGD VYLKLQPYRQ+S  R+R +KLAP+F+GPY+I E++G VAY 
Sbjct: 1236 MKQNADLNRVDKCYKVGDYVYLKLQPYRQQSVIRRRNQKLAPRFFGPYKITEKVGAVAYK 1295

Query: 61   MDLPPEAMIHTCF 74
            ++LPP + IH  F
Sbjct: 1296 LELPPTSGIHPVF 1308

[Close]

BLAST of MELO3C013144 vs. TrEMBL
Match: A5BEK1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_026680 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 2.6e-16
Identity = 41/73 (56.16%), Postives = 56/73 (76.71%), Query Frame = 1


Query: 1    MKKEADLRRHETKFKVGDGVYLKLQPYRQRSSARKRCEKLAPKFYGPYRIIEEIGEVAYH 60
            MKK AD++     F +GD VYL+LQPY+Q+S  ++R  KL+P+FYGPYR++E+IG VAY 
Sbjct: 1314 MKKFADIKXTARSFNIGDLVYLRLQPYKQQSVVQRRNLKLSPRFYGPYRVLEKIGTVAYR 1373

Query: 61   MDLPPEAMIHTCF 74
            ++LPPEA IH  F
Sbjct: 1374 LELPPEAKIHPVF 1386

[Close]

BLAST of MELO3C013144 vs. TrEMBL
Match: A0A151RG62_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_037051 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 9.7e-16
Identity = 43/73 (58.90%), Postives = 53/73 (72.60%), Query Frame = 1


Query: 1  MKKEADLRRHETKFKVGDGVYLKLQPYRQRSSARKRCEKLAPKFYGPYRIIEEIGEVAYH 60
          MKK AD  R      +GD VYLKL+PYR RS ARKR EKL+P+FYGPY+I ++IG VA+ 
Sbjct: 1  MKKYADQSRRAVSLVIGDWVYLKLKPYRLRSLARKRNEKLSPRFYGPYQITKQIGAVAFQ 60

Query: 61 MDLPPEAMIHTCF 74
          + LPPE+ IH  F
Sbjct: 61 LALPPESKIHPVF 73

[Close]

BLAST of MELO3C013144 vs. TrEMBL
Match: A0A151RTA2_CAJCA (Retrotransposable element Tf2 OS=Cajanus cajan GN=KK1_032688 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 9.7e-16
Identity = 43/73 (58.90%), Postives = 53/73 (72.60%), Query Frame = 1


Query: 1   MKKEADLRRHETKFKVGDGVYLKLQPYRQRSSARKRCEKLAPKFYGPYRIIEEIGEVAYH 60
           MKK AD  R      +GD VYLKL+PYR RS ARKR EKL+P+FYGPY+I ++IG VA+ 
Sbjct: 140 MKKYADQSRRAVSLAIGDWVYLKLKPYRLRSLARKRNEKLSPRFYGPYQITKQIGVVAFQ 199

Query: 61  MDLPPEAMIHTCF 74
           + LPPE+ IH  F
Sbjct: 200 LALPPESKIHPVF 212

[Close]

BLAST of MELO3C013144 vs. NCBI nr
Match: gi|659094491|ref|XP_008448087.1| (PREDICTED: uncharacterized protein LOC103490375 [Cucumis melo])

HSP 1 Score: 112.5 bits (280), Expect = 3.4e-22
Identity = 53/73 (72.60%), Postives = 61/73 (83.56%), Query Frame = 1


Query: 1    MKKEADLRRHETKFKVGDGVYLKLQPYRQRSSARKRCEKLAPKFYGPYRIIEEIGEVAYH 60
            MKK ADL+R E K KVG+ VYLKL+PYRQRS ARK+ EKLAP++YGPY+IIEEIG VAY 
Sbjct: 959  MKKFADLKRRELKLKVGEEVYLKLKPYRQRSLARKKSEKLAPRYYGPYKIIEEIGAVAYR 1018

Query: 61   MDLPPEAMIHTCF 74
            +DLPPEA IH  F
Sbjct: 1019 LDLPPEAAIHNVF 1031

[Close]

BLAST of MELO3C013144 vs. NCBI nr
Match: gi|922560347|ref|XP_013608444.1| (PREDICTED: uncharacterized protein LOC106315243 [Brassica oleracea var. oleracea])

HSP 1 Score: 97.8 bits (242), Expect = 8.7e-18
Identity = 44/73 (60.27%), Postives = 57/73 (78.08%), Query Frame = 1


Query: 1    MKKEADLRRHETKFKVGDGVYLKLQPYRQRSSARKRCEKLAPKFYGPYRIIEEIGEVAYH 60
            MK++AD  R E +F VGD V+LKLQPYRQ++ +R+ C+KLA KFYGPY++IE IG+ AY 
Sbjct: 1135 MKQQADKSRREVEFSVGDMVFLKLQPYRQKTVSRRVCQKLAAKFYGPYKVIERIGKTAYK 1194

Query: 61   MDLPPEAMIHTCF 74
            + LPPEA IH  F
Sbjct: 1195 LLLPPEARIHVVF 1207

[Close]

BLAST of MELO3C013144 vs. NCBI nr
Match: gi|923923198|ref|XP_013730756.1| (PREDICTED: uncharacterized protein LOC106434427 [Brassica napus])

HSP 1 Score: 97.1 bits (240), Expect = 1.5e-17
Identity = 44/73 (60.27%), Postives = 57/73 (78.08%), Query Frame = 1


Query: 1    MKKEADLRRHETKFKVGDGVYLKLQPYRQRSSARKRCEKLAPKFYGPYRIIEEIGEVAYH 60
            MK +AD  R E +F VGD VYLKLQPYRQ+S  ++  +KLA KF+GPY++IE +G+VAY 
Sbjct: 1437 MKSQADKSRREVEFVVGDMVYLKLQPYRQKSVVKRFNQKLAAKFFGPYKVIERVGKVAYK 1496

Query: 61   MDLPPEAMIHTCF 74
            ++LPPEA IHT F
Sbjct: 1497 LELPPEARIHTVF 1509

[Close]

BLAST of MELO3C013144 vs. NCBI nr
Match: gi|89887350|gb|ABD78329.1| (polyprotein [Primula vulgaris])

HSP 1 Score: 93.6 bits (231), Expect = 1.6e-16
Identity = 43/73 (58.90%), Postives = 57/73 (78.08%), Query Frame = 1


Query: 1   MKKEADLRRHETKFKVGDGVYLKLQPYRQRSSARKRCEKLAPKFYGPYRIIEEIGEVAYH 60
           MK+ ADL R +  +KVGD VYLKLQPYRQ+S  R+R +KLAP+F+GPY+I E++G VAY 
Sbjct: 260 MKQNADLNRVDKCYKVGDYVYLKLQPYRQQSVIRRRNQKLAPRFFGPYKITEKVGAVAYK 319

Query: 61  MDLPPEAMIHTCF 74
           ++LPP + IH  F
Sbjct: 320 LELPPTSGIHPVF 332

[Close]

BLAST of MELO3C013144 vs. NCBI nr
Match: gi|89887334|gb|ABD78322.1| (polyprotein [Primula vulgaris])

HSP 1 Score: 93.6 bits (231), Expect = 1.6e-16
Identity = 43/73 (58.90%), Postives = 57/73 (78.08%), Query Frame = 1


Query: 1    MKKEADLRRHETKFKVGDGVYLKLQPYRQRSSARKRCEKLAPKFYGPYRIIEEIGEVAYH 60
            MK+ ADL R +  +KVGD VYLKLQPYRQ+S  R+R +KLAP+F+GPY+I E++G VAY 
Sbjct: 1236 MKQNADLNRVDKCYKVGDYVYLKLQPYRQQSVIRRRNQKLAPRFFGPYKITEKVGAVAYK 1295

Query: 61   MDLPPEAMIHTCF 74
            ++LPP + IH  F
Sbjct: 1296 LELPPTSGIHPVF 1308

The following BLAST results are available for this feature:

BLAST of MELO3C013144 vs. TrEMBL


Match Name	E-value	Identity	Description
A5X2T1_9ERIC	1.1e-16	58.90	Polyprotein (Fragment) OS=Primula vulgaris PE=4 SV=1	[more]
A5X2S4_9ERIC	1.1e-16	58.90	Polyprotein OS=Primula vulgaris PE=4 SV=1	[more]
A5BEK1_VITVI	2.6e-16	56.16	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_026680 PE=4 SV=1	[more]
A0A151RG62_CAJCA	9.7e-16	58.90	Uncharacterized protein OS=Cajanus cajan GN=KK1_037051 PE=4 SV=1	[more]
A0A151RTA2_CAJCA	9.7e-16	58.90	Retrotransposable element Tf2 OS=Cajanus cajan GN=KK1_032688 PE=4 SV=1	[more]

BLAST of MELO3C013144 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659094491\|ref\|XP_008448087.1\|	3.4e-22	72.60	PREDICTED: uncharacterized protein LOC103490375 [Cucumis melo]	[more]
gi\|922560347\|ref\|XP_013608444.1\|	8.7e-18	60.27	PREDICTED: uncharacterized protein LOC106315243 [Brassica oleracea var. oleracea...	[more]
gi\|923923198\|ref\|XP_013730756.1\|	1.5e-17	60.27	PREDICTED: uncharacterized protein LOC106434427 [Brassica napus]	[more]
gi\|89887350\|gb\|ABD78329.1\|	1.6e-16	58.90	polyprotein [Primula vulgaris]	[more]
gi\|89887334\|gb\|ABD78322.1\|	1.6e-16	58.90	polyprotein [Primula vulgaris]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043170	macromolecule metabolic process
biological_process	GO:0044238	primary metabolic process
cellular_component	GO:0031410	cytoplasmic vesicle
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C013144T1	MELO3C013144T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR24559	FAMILY NOT NAMED	coord: 1..70 score: 1.5
None	No IPR available	PANTHER	PTHR24559:SF186	SUBFAMILY NOT NAMED	coord: 1..70 score: 1.5

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C013144	Cucumber (Chinese Long) v3	cucmeB552
MELO3C013144	Watermelon (97103) v2	mewmbB228
MELO3C013144	Wax gourd	mewgoB255
MELO3C013144	Cucurbita maxima (Rimu)	cmameB018
MELO3C013144	Cucurbita maxima (Rimu)	cmameB395
MELO3C013144	Cucurbita moschata (Rifu)	cmomeB007
MELO3C013144	Cucurbita moschata (Rifu)	cmomeB386
MELO3C013144	Wild cucumber (PI 183967)	cpimeB542
MELO3C013144	Cucumber (Chinese Long) v2	cumeB534
MELO3C013144	Watermelon (Charleston Gray)	mewcgB180
MELO3C013144	Watermelon (97103) v1	mewmB201
MELO3C013144	Cucurbita pepo (Zucchini)	cpemeB503
MELO3C013144	Cucurbita pepo (Zucchini)	cpemeB713
MELO3C013144	Bottle gourd (USVL1VR-Ls)	lsimeB188
MELO3C013144	Cucumber (Gy14) v2	cgybmeB472
MELO3C013144	Silver-seed gourd	carmeB0872
MELO3C013144	Silver-seed gourd	carmeB0890