MELO3C026467 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C026467
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionGag-pol polyprotein, related
Locationchr10 : 22286924 .. 22287229 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAATGTGGATTTTTCACCTCGGAACCGTGATCAGGACTGTGGAACACCATACAAAGATAGATTTGACAAATTTGATAAGTTTGTGAGGTGTCATGAATGTGAGGGACACGTACACATTCAAGCGGAATGCACCATCTATTTGAAGAGAAAGAAGAAGATTCTCAACATCACTTTGTCAGATGAAGACACGACGTCAGACAGTGAGTGTGAAGACTACGGTAGAGCGTTAATCAGTTGTGAAGCTGAAGGAAGTTTAGAACTACTGAGTAATGATGAATTGCTACTTCAAGCAGTCATATAA

mRNA sequence

ATGGAAAATGTGGATTTTTCACCTCGGAACCGTGATCAGGACTGTGGAACACCATACAAAGATAGATTTGACAAATTTGATAAGTTTGTGAGGTGTCATGAATGTGAGGGACACGTACACATTCAAGCGGAATGCACCATCTATTTGAAGAGAAAGAAGAAGATTCTCAACATCACTTTGTCAGATGAAGACACGACGTCAGACAGTGAGTGTGAAGACTACGGTAGAGCGTTAATCAGTTGTGAAGCTGAAGGAAGTTTAGAACTACTGAGTAATGATGAATTGCTACTTCAAGCAGTCATATAA

Coding sequence (CDS)

ATGGAAAATGTGGATTTTTCACCTCGGAACCGTGATCAGGACTGTGGAACACCATACAAAGATAGATTTGACAAATTTGATAAGTTTGTGAGGTGTCATGAATGTGAGGGACACGTACACATTCAAGCGGAATGCACCATCTATTTGAAGAGAAAGAAGAAGATTCTCAACATCACTTTGTCAGATGAAGACACGACGTCAGACAGTGAGTGTGAAGACTACGGTAGAGCGTTAATCAGTTGTGAAGCTGAAGGAAGTTTAGAACTACTGAGTAATGATGAATTGCTACTTCAAGCAGTCATATAA

Protein sequence

MENVDFSPRNRDQDCGTPYKDRFDKFDKFVRCHECEGHVHIQAECTIYLKRKKKILNITLSDEDTTSDSECEDYGRALISCEAEGSLELLSNDELLLQAVI*
Homology
[Close]
BLAST of MELO3C026467 vs. NCBI nr
Match: gi|659072224|ref|XP_008464095.1| (PREDICTED: uncharacterized protein LOC103502061 [Cucumis melo])

HSP 1 Score: 67.4 bits (163), Expect = 1.7e-08
Identity = 44/85 (51.76%), Postives = 49/85 (57.65%), Query Frame = 1 

Query: 16  GTPYKDRF---DKFDKFVRCHECEGHVHIQAECTIYLKRKKKILNITLSDEDTTSDSECE 75
           G+  KD +   D+ DK VRCHECEG  H QAE  IYLKRKKK L ITLS           
Sbjct: 246 GSRRKDSYQNTDQIDKSVRCHECEGFRHHQAEYAIYLKRKKKGLAITLS----------- 305

Query: 76  DYGRALISCEAEGSLELLSNDELLL 98
             GRALISCE E     +SND  L+
Sbjct: 306 --GRALISCEQE-----ISNDNNLI 312

[Close]
BLAST of MELO3C026467 vs. NCBI nr
Match: gi|659109365|ref|XP_008454677.1| (PREDICTED: uncharacterized protein LOC103495033 [Cucumis melo])

HSP 1 Score: 65.9 bits (159), Expect = 4.8e-08
Identity = 35/73 (47.95%), Postives = 45/73 (61.64%), Query Frame = 1 

Query: 9   RNRDQDCGTPYK-DRFDKFDKFVRCHECEGHVHIQAECTIYLKRKKKILNITLSDEDTTS 68
           R +D D G      R +++DK +RCHECE   HIQ+EC  YLK KKK L  T S+E+  S
Sbjct: 113 RKKDHDRGKGIGISRLEEYDKGIRCHECEEFGHIQSECATYLKCKKKGLVATFSNEEDYS 172

Query: 69  DSECEDYGRALIS 81
            S+ E+ G  LIS
Sbjct: 173 KSDDEEVGMTLIS 185

The following BLAST results are available for this feature:
BLAST of MELO3C026467 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659072224|ref|XP_008464095.1|1.7e-0851.76PREDICTED: uncharacterized protein LOC103502061 [Cucumis melo][more]
gi|659109365|ref|XP_008454677.1|4.8e-0847.95PREDICTED: uncharacterized protein LOC103495033 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C026467T1MELO3C026467T1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C026467Cucurbita pepo (Zucchini)cpemeB374
MELO3C026467Bottle gourd (USVL1VR-Ls)lsimeB081
MELO3C026467Wax gourdmewgoB079
MELO3C026467Cucurbita maxima (Rimu)cmameB663
MELO3C026467Cucurbita moschata (Rifu)cmomeB656
MELO3C026467Wild cucumber (PI 183967)cpimeB378
MELO3C026467Watermelon (Charleston Gray)mewcgB051
MELO3C026467Watermelon (97103) v1mewmB074