MELO3C004924 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C004924
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Putative retroelement pol polyprotein
Location	chr12 : 6734949 .. 6735299 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGACCTCAATTTCTCCGATGAAACCCTTATACCCCATCCAAGTTCTTCACACAATCCTGAAGTTCTTCCTACTTCTACCATGAACTCACCAAACACATTAACTCATGCCTTGTCGCAAATTTCCCACAACCCGTCCGAAACATATCTCAACCCTTATTTCCTTCACCACAACGACAATACCAGCCTGGTTCTTGTCAATGAACTTCTCATAGAAGAAAACTATGTATCATGGAGTCGTGCTATGATCTTCGAACTCTCCATCAAGAACAAAATCAGTTTAATGGACGTCACCTTGCCCCGACCTCCCAGTGATATGCTTTTGGCATGGATTCGCAACAAAACATAG

mRNA sequence

ATGGCCGACCTCAATTTCTCCGATGAAACCCTTATACCCCATCCAAGTTCTTCACACAATCCTGAAGTTCTTCCTACTTCTACCATGAACTCACCAAACACATTAACTCATGCCTTGTCGCAAATTTCCCACAACCCGTCCGAAACATATCTCAACCCTTATTTCCTTCACCACAACGACAATACCAGCCTGGTTCTTGTCAATGAACTTCTCATAGAAGAAAACTATGTATCATGGAGTCGTGCTATGATCTTCGAACTCTCCATCAAGAACAAAATCAGTTTAATGGACGTCACCTTGCCCCGACCTCCCAGTGATATGCTTTTGGCATGGATTCGCAACAAAACATAG

Coding sequence (CDS)

ATGGCCGACCTCAATTTCTCCGATGAAACCCTTATACCCCATCCAAGTTCTTCACACAATCCTGAAGTTCTTCCTACTTCTACCATGAACTCACCAAACACATTAACTCATGCCTTGTCGCAAATTTCCCACAACCCGTCCGAAACATATCTCAACCCTTATTTCCTTCACCACAACGACAATACCAGCCTGGTTCTTGTCAATGAACTTCTCATAGAAGAAAACTATGTATCATGGAGTCGTGCTATGATCTTCGAACTCTCCATCAAGAACAAAATCAGTTTAATGGACGTCACCTTGCCCCGACCTCCCAGTGATATGCTTTTGGCATGGATTCGCAACAAAACATAG

Protein sequence

MADLNFSDETLIPHPSSSHNPEVLPTSTMNSPNTLTHALSQISHNPSETYLNPYFLHHNDNTSLVLVNELLIEENYVSWSRAMIFELSIKNKISLMDVTLPRPPSDMLLAWIRNKT*

Homology

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BLAST of MELO3C004924 vs. TrEMBL
Match: A0A151S1Q4_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_029659 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.1e-10
Identity = 36/77 (46.75%), Postives = 50/77 (64.94%), Query Frame = 1


Query: 39  LSQISHNPSETYLNPYFLHHNDNTSLVLVNELLIEENYVSWSRAMIFELSIKNKISLMDV 98
           +++   +PS    NP FLHH+D   LVL ++ L  +NY +WSRAM+  LS+KNKI  +D 
Sbjct: 1   MAKTPKDPSSDPTNPLFLHHSDGPGLVLTSQPLDNKNYTTWSRAMLVALSVKNKIPFVDG 60

Query: 99  TLPRPPSD--MLLAWIR 114
           +LPRP +D     AWIR
Sbjct: 61  SLPRPAADDPTYAAWIR 77

[Close]

BLAST of MELO3C004924 vs. TrEMBL
Match: A0A0A0LI19_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G151060 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 9.2e-10
Identity = 34/72 (47.22%), Postives = 46/72 (63.89%), Query Frame = 1


Query: 32  PNTLTHALSQISHNPSETYLNPYFLHHNDNTSLVLVNELLIEENYVSWSRAMIFELSIKN 91
           PN+ +      + +  E Y NPYFLHH++NTS+VLV+ LL E NY SWS+AM   L  KN
Sbjct: 8   PNSSSSINQTTNFSTIEQYSNPYFLHHSNNTSIVLVSNLLTETNYASWSQAMKIRLIGKN 67

Query: 92  KISLMDVTLPRP 104
           K+   D ++ RP
Sbjct: 68  KLGFTDDSITRP 79

[Close]

BLAST of MELO3C004924 vs. TrEMBL
Match: A0A151SCF5_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_025635 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.6e-09
Identity = 34/77 (44.16%), Postives = 50/77 (64.94%), Query Frame = 1


Query: 39  LSQISHNPSETYLNPYFLHHNDNTSLVLVNELLIEENYVSWSRAMIFELSIKNKISLMDV 98
           +++   +PS    NP FLHH++   LVL ++ L  +NY +WSRAM+  LS+KNKI  +D 
Sbjct: 1   MAKTPKDPSSDPTNPLFLHHSNGPGLVLTSQPLDNKNYTTWSRAMLVALSVKNKIPFVDG 60

Query: 99  TLPRPPSD--MLLAWIR 114
           +LPRP ++     AWIR
Sbjct: 61  SLPRPAANDPTYAAWIR 77

[Close]

BLAST of MELO3C004924 vs. TrEMBL
Match: A5BP26_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_034590 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.0e-09
Identity = 39/89 (43.82%), Postives = 56/89 (62.92%), Query Frame = 1


Query: 29  MNSPNTLTHALSQISHNPS--ETYLNPYFLHHNDNTSLVLVNELLIEENYVSWSRAMIFE 88
           M   +T+T A + + ++ S  E   +PYFLH+ D+  +VLV+  L   NY +WSRAM+  
Sbjct: 1   MTRGSTITRATTSVPNSLSSMEDSTSPYFLHNLDHPGIVLVSHHLTGANYNTWSRAMVMA 60

Query: 89  LSIKNKISLMDVTLPRPPSDMLL--AWIR 114
           L+ KNKIS +D ++P P SD LL   WIR
Sbjct: 61  LTAKNKISFIDGSIPCPESDDLLFGTWIR 89

[Close]

BLAST of MELO3C004924 vs. TrEMBL
Match: A0A151QNL0_CAJCA (Putative transposon Ty5-1 protein YCL075W family OS=Cajanus cajan GN=KK1_047587 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 4.5e-09
Identity = 33/76 (43.42%), Postives = 47/76 (61.84%), Query Frame = 1


Query: 39  LSQISHNPSETYLNPYFLHHNDNTSLVLVNELLIEENYVSWSRAMIFELSIKNKISLMDV 98
           +++   +PS    NP FLHH+D   L L ++ L  +NY +WSRAM+  L +KNKI  +D 
Sbjct: 1   MAKTPKDPSSDPTNPLFLHHSDGPGLFLTSQPLDNKNYTTWSRAMLVALGVKNKIPFVDG 60

Query: 99  TLPRPPSD--MLLAWI 113
           +LPRP +D     AWI
Sbjct: 61  SLPRPAADDPTYAAWI 76

[Close]

BLAST of MELO3C004924 vs. NCBI nr
Match: gi|778668587|ref|XP_011649121.1| (PREDICTED: uncharacterized protein LOC105434586 [Cucumis sativus])

HSP 1 Score: 104.8 bits (260), Expect = 1.1e-19
Identity = 50/90 (55.56%), Postives = 62/90 (68.89%), Query Frame = 1


Query: 25  PTSTMNSPNTLTHALSQISHNPSETYLNPYFLHHNDNTSLVLVNELLIEENYVSWSRAMI 84
           P +  N  +  +   +Q S + ++ YLNPYFLHHNDNT+LVLV E L EENYVSWSRAM 
Sbjct: 13  PKNQENPNSNQSDTSAQTSFDQNQGYLNPYFLHHNDNTNLVLVTEQLTEENYVSWSRAMT 72

Query: 85  FELSIKNKISLMDVTLPRPPSDMLLAWIRN 115
             LS+KNKI  +D T+ RP  D+L  WIRN
Sbjct: 73  IGLSVKNKIGFVDGTIARPTGDLLPVWIRN 102

[Close]

BLAST of MELO3C004924 vs. NCBI nr
Match: gi|778674147|ref|XP_011650144.1| (PREDICTED: uncharacterized protein LOC105434731 [Cucumis sativus])

HSP 1 Score: 90.5 bits (223), Expect = 2.1e-15
Identity = 47/108 (43.52%), Postives = 65/108 (60.19%), Query Frame = 1


Query: 7   SDETLIPHPSSSHNPEVLPTSTMNSPNTLTHALSQISHNPSETYLNPYFLHHNDNTSLVL 66
           + +T+  + S++   +  P  T + P        Q   +P++ Y NP+ +HHNDN+SL+L
Sbjct: 5   TSQTINLNSSTTSQTQENPPPTSDGP--------QNPVDPNQGYFNPFCIHHNDNSSLIL 64

Query: 67  VNELLIEENYVSWSRAMIFELSIKNKISLMDVTLPRPPSDMLLAWIRN 115
           V E L EENYVSWSR MI  L IKNK+   D +L RP  D L +WIRN
Sbjct: 65  VTEPLTEENYVSWSRGMIIGLFIKNKLGFSDGSLSRPNDDSLPSWIRN 104

[Close]

BLAST of MELO3C004924 vs. NCBI nr
Match: gi|848866334|ref|XP_012833844.1| (PREDICTED: uncharacterized protein LOC105954710 [Erythranthe guttata])

HSP 1 Score: 78.2 bits (191), Expect = 1.1e-11
Identity = 36/75 (48.00%), Postives = 52/75 (69.33%), Query Frame = 1


Query: 43  SHNPSETYLNPYFLHHNDNTSLVLVNELLIEENYVSWSRAMIFELSIKNKISLMDVTLPR 102
           + +P +   +P FLH +D  +L+LV++LL E+NY SWSRAM   L++KNKI  +D T+  
Sbjct: 5   ARSPLDDVSHPMFLHPSDGPNLILVSQLLTEDNYASWSRAMTISLTVKNKIGFIDGTISE 64

Query: 103 PPSDMLL---AWIRN 115
           PP+D L+   AWIRN
Sbjct: 65  PPADELIMRNAWIRN 79

[Close]

BLAST of MELO3C004924 vs. NCBI nr
Match: gi|659114324|ref|XP_008457013.1| (PREDICTED: uncharacterized protein LOC103496792 [Cucumis melo])

HSP 1 Score: 77.0 bits (188), Expect = 2.4e-11
Identity = 40/101 (39.60%), Postives = 64/101 (63.37%), Query Frame = 1


Query: 17  SSHNPEVLPTSTMNS-PNTL--THALSQISHNPSETYLNPYFLHHNDNTSLVLVNELLIE 76
           S+ +P + P+S+ N+ PNT   TH     S N      +PY L+H+D ++L+LV EL+ +
Sbjct: 19  STVSPTIPPSSSANNLPNTSCNTHQEQYASSN------SPYILNHSDTSNLILVTELVTD 78

Query: 77  ENYVSWSRAMIFELSIKNKISLMDVTLPRPPSDMLLAWIRN 115
            NYV WSR+M+  +SI+NK+  +DV + +P  ++L  WI N
Sbjct: 79  NNYVIWSRSMVLAVSIQNKLGFIDVLITKPAGELLPLWIWN 113

[Close]

BLAST of MELO3C004924 vs. NCBI nr
Match: gi|1012337401|gb|KYP48677.1| (hypothetical protein KK1_029659 [Cajanus cajan])

HSP 1 Score: 74.3 bits (181), Expect = 1.6e-10
Identity = 36/77 (46.75%), Postives = 50/77 (64.94%), Query Frame = 1


Query: 39  LSQISHNPSETYLNPYFLHHNDNTSLVLVNELLIEENYVSWSRAMIFELSIKNKISLMDV 98
           +++   +PS    NP FLHH+D   LVL ++ L  +NY +WSRAM+  LS+KNKI  +D 
Sbjct: 1   MAKTPKDPSSDPTNPLFLHHSDGPGLVLTSQPLDNKNYTTWSRAMLVALSVKNKIPFVDG 60

Query: 99  TLPRPPSD--MLLAWIR 114
           +LPRP +D     AWIR
Sbjct: 61  SLPRPAADDPTYAAWIR 77

The following BLAST results are available for this feature:

BLAST of MELO3C004924 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A151S1Q4_CAJCA	1.1e-10	46.75	Uncharacterized protein OS=Cajanus cajan GN=KK1_029659 PE=4 SV=1	[more]
A0A0A0LI19_CUCSA	9.2e-10	47.22	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G151060 PE=4 SV=1	[more]
A0A151SCF5_CAJCA	1.6e-09	44.16	Uncharacterized protein OS=Cajanus cajan GN=KK1_025635 PE=4 SV=1	[more]
A5BP26_VITVI	2.0e-09	43.82	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_034590 PE=4 SV=1	[more]
A0A151QNL0_CAJCA	4.5e-09	43.42	Putative transposon Ty5-1 protein YCL075W family OS=Cajanus cajan GN=KK1_047587 ...	[more]

BLAST of MELO3C004924 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778668587\|ref\|XP_011649121.1\|	1.1e-19	55.56	PREDICTED: uncharacterized protein LOC105434586 [Cucumis sativus]	[more]
gi\|778674147\|ref\|XP_011650144.1\|	2.1e-15	43.52	PREDICTED: uncharacterized protein LOC105434731 [Cucumis sativus]	[more]
gi\|848866334\|ref\|XP_012833844.1\|	1.1e-11	48.00	PREDICTED: uncharacterized protein LOC105954710 [Erythranthe guttata]	[more]
gi\|659114324\|ref\|XP_008457013.1\|	2.4e-11	39.60	PREDICTED: uncharacterized protein LOC103496792 [Cucumis melo]	[more]
gi\|1012337401\|gb\|KYP48677.1\|	1.6e-10	46.75	hypothetical protein KK1_029659 [Cajanus cajan]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C004924T1	MELO3C004924T1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C004924	Cucurbita maxima (Rimu)	cmameB194
MELO3C004924	Cucurbita maxima (Rimu)	cmameB391
MELO3C004924	Cucurbita moschata (Rifu)	cmomeB181
MELO3C004924	Cucurbita moschata (Rifu)	cmomeB382
MELO3C004924	Wild cucumber (PI 183967)	cpimeB011
MELO3C004924	Cucumber (Chinese Long) v2	cumeB015
MELO3C004924	Cucumber (Chinese Long) v2	cumeB186
MELO3C004924	Watermelon (Charleston Gray)	mewcgB149
MELO3C004924	Watermelon (97103) v1	mewmB146
MELO3C004924	Cucurbita pepo (Zucchini)	cpemeB480
MELO3C004924	Cucurbita pepo (Zucchini)	cpemeB490
MELO3C004924	Bottle gourd (USVL1VR-Ls)	lsimeB244
MELO3C004924	Cucumber (Gy14) v2	cgybmeB010
MELO3C004924	Silver-seed gourd	carmeB0171
MELO3C004924	Silver-seed gourd	carmeB0449
MELO3C004924	Cucumber (Chinese Long) v3	cucmeB010
MELO3C004924	Watermelon (97103) v2	mewmbB153
MELO3C004924	Wax gourd	mewgoB174