WMU79650 (transcribed_cluster) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	WMU79650
Type	transcribed_cluster
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Receptor-kinase-like protein
Location	Chr1 : 16706714 .. 16707166 (+)
Sequence length	452

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

CGTGAATGTGCTTTCATCTTTGGTTGAGAAGTGGAAACCAATTCACAATGATGCTGACAGTTTCTCTGGGATCGATTACAGTCTACCCCTTCCTCAAATGCTGAAGGTATGGCAGGAATCGGAAAGCAAGGAGACGAGCTTTACAAGCCTTCAAGACAGTAAGGGAAGCATCCCCGCTCGCCCCACCGGATTTGCAGACTCCTTCACCTCTGTTGATGGAAGATGAGTAAACTCCATTGGGGTACAGAAACTTTTCTTGTTACAATATACAAGGGTGATGAACATTCCCTTTTGAACTACTACCTTCTTGCTGAATATAATATAATCAATTAAAGCAGTTGAAAGTTGGTTTCTTTGGCTTCTTAGACATGGAGTGCTTTTGATATCACTTTTTTTCAGTTTGTTCCTTTATTTATATCATATTTCTTTATATATAATGGAATTTACTTTGT

Library


Library category	ESTs
Watermelon normalization and subtraction library	1

Homology

[Close]

BLAST of WMU79650 vs. TAIR10
Match: AT2G01820.1 (AT2G01820.1 Leucine-rich repeat protein kinase family protein)

HSP 1 Score: 87.0 bits (214), Expect = 1.0e-17
Identity = 44/84 (52.38%), Postives = 54/84 (64.29%), Query Frame = 2


Query: 2   VNVLSSLVEKWKPIHNDADSFSGIDYSLPLPQMLKVWQ----------ESESKETSFTSL 61
           VNVLSSL  +WKP   D D   GIDY +PLPQ+LK WQ          +S S  +++ S 
Sbjct: 860 VNVLSSLTVQWKPTETDPDDVYGIDYDMPLPQVLKKWQAFEGLSQTADDSGSSSSAYGSK 919

Query: 62  QDSKGSIPARPTGFADSFTSVDGR 121
            +++ SIP RP+GFADSFTSVDGR
Sbjct: 920 DNTQTSIPTRPSGFADSFTSVDGR 943

Query: 122  181
           
Sbjct: 980  943

Query: 182  224
           
Sbjct: 1040  943

[Close]

BLAST of WMU79650 vs. TAIR10
Match: AT1G66150.1 (AT1G66150.1 transmembrane kinase 1)

HSP 1 Score: 76.3 bits (186), Expect = 1.8e-14
Identity = 41/81 (50.62%), Postives = 48/81 (59.26%), Query Frame = 2


Query: 2   VNVLSSLVEKWKPIHNDADSFSGIDYSLPLPQMLKVWQESE-------SKETSFTSLQDS 61
           VN+LSSLVE WKP   + +   GID  + LPQ LK WQ  E       S  +   SL ++
Sbjct: 862 VNILSSLVELWKPSDQNPEDIYGIDLDMSLPQALKKWQAYEGRSDLESSTSSLLPSLDNT 921

Query: 62  KGSIPARPTGFADSFTSVDGR 121
           + SIP RP GFA+SFTSVDGR
Sbjct: 922 QMSIPTRPYGFAESFTSVDGR 942

Query: 122  181
           
Sbjct: 982  942

Query: 182  224
           
Sbjct: 1042  942

[Close]

BLAST of WMU79650 vs. TAIR10
Match: AT3G23750.1 (AT3G23750.1 Leucine-rich repeat protein kinase family protein)

HSP 1 Score: 63.2 bits (152), Expect = 1.6e-10
Identity = 35/78 (44.87%), Postives = 44/78 (56.41%), Query Frame = 2


Query: 2   VNVLSSLVEKWKPIHNDADSFSGIDYSLPLPQMLKVWQ-ESESKETSF---TSLQDSKGS 61
           VNVL  LVEKWKP   + +   GID ++ LPQ L+ WQ E  S  T F    S   ++ S
Sbjct: 851 VNVLGPLVEKWKPSCQEEEESFGIDVNMSLPQALQRWQNEGTSSSTMFHGDFSYSQTQSS 910

Query: 62  IPARPTGFADSFTSVDGR 121
           IP + +GF ++F S DGR
Sbjct: 911 IPPKASGFPNTFDSADGR 928

Query: 122  181
           
Sbjct: 971  928

Query: 182  224
           
Sbjct: 1031  928

[Close]

BLAST of WMU79650 vs. Swiss-Prot
Match: TMK3_ARATH (Receptor-like kinase TMK3 OS=Arabidopsis thaliana GN=TMK3 PE=2 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.9e-16
Identity = 44/84 (52.38%), Postives = 54/84 (64.29%), Query Frame = 2


Query: 2   VNVLSSLVEKWKPIHNDADSFSGIDYSLPLPQMLKVWQ----------ESESKETSFTSL 61
           VNVLSSL  +WKP   D D   GIDY +PLPQ+LK WQ          +S S  +++ S 
Sbjct: 860 VNVLSSLTVQWKPTETDPDDVYGIDYDMPLPQVLKKWQAFEGLSQTADDSGSSSSAYGSK 919

Query: 62  QDSKGSIPARPTGFADSFTSVDGR 121
            +++ SIP RP+GFADSFTSVDGR
Sbjct: 920 DNTQTSIPTRPSGFADSFTSVDGR 943

Query: 122  181
           
Sbjct: 980  943

Query: 182  224
           
Sbjct: 1040  943

[Close]

BLAST of WMU79650 vs. Swiss-Prot
Match: TMK1_ARATH (Receptor protein kinase TMK1 OS=Arabidopsis thaliana GN=TMK1 PE=1 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 3.3e-13
Identity = 41/81 (50.62%), Postives = 48/81 (59.26%), Query Frame = 2


Query: 2   VNVLSSLVEKWKPIHNDADSFSGIDYSLPLPQMLKVWQESE-------SKETSFTSLQDS 61
           VN+LSSLVE WKP   + +   GID  + LPQ LK WQ  E       S  +   SL ++
Sbjct: 862 VNILSSLVELWKPSDQNPEDIYGIDLDMSLPQALKKWQAYEGRSDLESSTSSLLPSLDNT 921

Query: 62  KGSIPARPTGFADSFTSVDGR 121
           + SIP RP GFA+SFTSVDGR
Sbjct: 922 QMSIPTRPYGFAESFTSVDGR 942

Query: 122  181
           
Sbjct: 982  942

Query: 182  224
           
Sbjct: 1042  942

[Close]

BLAST of WMU79650 vs. Swiss-Prot
Match: TMK4_ARATH (Receptor-like kinase TMK4 OS=Arabidopsis thaliana GN=TMK4 PE=1 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.9e-09
Identity = 35/78 (44.87%), Postives = 44/78 (56.41%), Query Frame = 2


Query: 2   VNVLSSLVEKWKPIHNDADSFSGIDYSLPLPQMLKVWQ-ESESKETSF---TSLQDSKGS 61
           VNVL  LVEKWKP   + +   GID ++ LPQ L+ WQ E  S  T F    S   ++ S
Sbjct: 851 VNVLGPLVEKWKPSCQEEEESFGIDVNMSLPQALQRWQNEGTSSSTMFHGDFSYSQTQSS 910

Query: 62  IPARPTGFADSFTSVDGR 121
           IP + +GF ++F S DGR
Sbjct: 911 IPPKASGFPNTFDSADGR 928

Query: 122  181
           
Sbjct: 971  928

Query: 182  224
           
Sbjct: 1031  928

[Close]

BLAST of WMU79650 vs. NCBI nr
Match: gi|1009113419|ref|XP_015873135.1| (PREDICTED: receptor-like kinase TMK3 [Ziziphus jujuba])

HSP 1 Score: 123.6 bits (309), Expect = 2.9e-25
Identity = 56/74 (75.68%), Postives = 66/74 (89.19%), Query Frame = 2


Query: 2   VNVLSSLVEKWKPIHNDADSFSGIDYSLPLPQMLKVWQESESKETSFTSLQDSKGSIPAR 61
           VNVL+ LVEKWKP++++ +SFSGIDYSLPLPQMLKVWQE+ES+  S+ SL DSKGSIPA+
Sbjct: 899 VNVLAPLVEKWKPVNDELESFSGIDYSLPLPQMLKVWQEAESRVVSYNSLSDSKGSIPAK 958

Query: 62  PTGFADSFTSVDGR 121
           P GFADSFTS DGR
Sbjct: 959 PIGFADSFTSTDGR 972

Query: 122  181
           
Sbjct: 1019  972

Query: 182  224
           
Sbjct: 1079  972

[Close]

BLAST of WMU79650 vs. NCBI nr
Match: gi|641839315|gb|KDO58246.1| (hypothetical protein CISIN_1g041143mg [Citrus sinensis])

HSP 1 Score: 122.5 bits (306), Expect = 6.4e-25
Identity = 57/74 (77.03%), Postives = 67/74 (90.54%), Query Frame = 2


Query: 2   VNVLSSLVEKWKPIHNDADSFSGIDYSLPLPQMLKVWQESESKETSFTSLQDSKGSIPAR 61
           VNVLS LVEKW+PI ++++  SGIDYSLPLPQMLKVWQE+ESKE S+ +L+DSKGSIPAR
Sbjct: 900 VNVLSPLVEKWRPITDESECCSGIDYSLPLPQMLKVWQEAESKEISYPNLEDSKGSIPAR 959

Query: 62  PTGFADSFTSVDGR 121
           PTGFA+SFTS DGR
Sbjct: 960 PTGFAESFTSSDGR 973

Query: 122  181
           
Sbjct: 1020  973

Query: 182  224
           
Sbjct: 1080  973

[Close]

BLAST of WMU79650 vs. NCBI nr
Match: gi|296084035|emb|CBI24423.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 122.5 bits (306), Expect = 6.4e-25
Identity = 57/74 (77.03%), Postives = 65/74 (87.84%), Query Frame = 2


Query: 2   VNVLSSLVEKWKPIHNDADSFSGIDYSLPLPQMLKVWQESESKETSFTSLQDSKGSIPAR 61
           VNVLS LVEKWKP  N+ +S+SGIDYSLPLPQMLK WQE+E+K+ S TSL+DSKGSIPAR
Sbjct: 844 VNVLSPLVEKWKPFDNETESYSGIDYSLPLPQMLKGWQEAETKDFSHTSLEDSKGSIPAR 903

Query: 62  PTGFADSFTSVDGR 121
           P GFA+SFTS DGR
Sbjct: 904 PAGFAESFTSSDGR 917

Query: 122  181
           
Sbjct: 964  917

Query: 182  224
           
Sbjct: 1024  917

[Close]

BLAST of WMU79650 vs. NCBI nr
Match: gi|567862926|ref|XP_006424117.1| (hypothetical protein CICLE_v10027751mg [Citrus clementina])

HSP 1 Score: 122.5 bits (306), Expect = 6.4e-25
Identity = 57/74 (77.03%), Postives = 67/74 (90.54%), Query Frame = 2


Query: 2   VNVLSSLVEKWKPIHNDADSFSGIDYSLPLPQMLKVWQESESKETSFTSLQDSKGSIPAR 61
           VNVLS LVEKW+PI ++++  SGIDYSLPLPQMLKVWQE+ESKE S+ +L+DSKGSIPAR
Sbjct: 900 VNVLSPLVEKWRPITDESECCSGIDYSLPLPQMLKVWQEAESKEISYPNLEDSKGSIPAR 959

Query: 62  PTGFADSFTSVDGR 121
           PTGFA+SFTS DGR
Sbjct: 960 PTGFAESFTSSDGR 973

Query: 122  181
           
Sbjct: 1020  973

Query: 182  224
           
Sbjct: 1080  973

[Close]

BLAST of WMU79650 vs. NCBI nr
Match: gi|731393934|ref|XP_010651647.1| (PREDICTED: probable receptor protein kinase TMK1 [Vitis vinifera])

HSP 1 Score: 122.5 bits (306), Expect = 6.4e-25
Identity = 57/74 (77.03%), Postives = 65/74 (87.84%), Query Frame = 2


Query: 2   VNVLSSLVEKWKPIHNDADSFSGIDYSLPLPQMLKVWQESESKETSFTSLQDSKGSIPAR 61
           VNVLS LVEKWKP  N+ +S+SGIDYSLPLPQMLK WQE+E+K+ S TSL+DSKGSIPAR
Sbjct: 895 VNVLSPLVEKWKPFDNETESYSGIDYSLPLPQMLKGWQEAETKDFSHTSLEDSKGSIPAR 954

Query: 62  PTGFADSFTSVDGR 121
           P GFA+SFTS DGR
Sbjct: 955 PAGFAESFTSSDGR 968

Query: 122  181
           
Sbjct: 1015  968

Query: 182  224
           
Sbjct: 1075  968

The following BLAST results are available for this feature:

BLAST of WMU79650 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G01820.1	1.0e-17	52.38	Leucine-rich repeat protein kinase family protein	[more]
AT1G66150.1	1.8e-14	50.62	transmembrane kinase 1	[more]
AT3G23750.1	1.6e-10	44.87	Leucine-rich repeat protein kinase family protein	[more]

BLAST of WMU79650 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TMK3_ARATH	1.9e-16	52.38	Receptor-like kinase TMK3 OS=Arabidopsis thaliana GN=TMK3 PE=2 SV=1	[more]
TMK1_ARATH	3.3e-13	50.62	Receptor protein kinase TMK1 OS=Arabidopsis thaliana GN=TMK1 PE=1 SV=1	[more]
TMK4_ARATH	2.9e-09	44.87	Receptor-like kinase TMK4 OS=Arabidopsis thaliana GN=TMK4 PE=1 SV=1	[more]

BLAST of WMU79650 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|1009113419\|ref\|XP_015873135.1\|	2.9e-25	75.68	PREDICTED: receptor-like kinase TMK3 [Ziziphus jujuba]	[more]
gi\|641839315\|gb\|KDO58246.1\|	6.4e-25	77.03	hypothetical protein CISIN_1g041143mg [Citrus sinensis]	[more]
gi\|296084035\|emb\|CBI24423.3\|	6.4e-25	77.03	unnamed protein product [Vitis vinifera]	[more]
gi\|567862926\|ref\|XP_006424117.1\|	6.4e-25	77.03	hypothetical protein CICLE_v10027751mg [Citrus clementina]	[more]
gi\|731393934\|ref\|XP_010651647.1\|	6.4e-25	77.03	PREDICTED: probable receptor protein kinase TMK1 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Cla011038	Cla011038	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
WMN72B12	WMN72B12	EST

InterPro

Analysis Name: InterPro Annotations of watermelon unigene v2
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR27001	FAMILY NOT NAMED	coord: 2..38 score: 3.0
None	No IPR available	PANTHER	PTHR27001:SF109	SUBFAMILY NOT NAMED	coord: 2..38 score: 3.0